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fs_default.txt
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fs_default.txt
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# Copyright (c) 2008-2021 the MRtrix3 contributors.
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Covered Software is provided under this License on an "as is"
# basis, without warranty of any kind, either expressed, implied, or
# statutory, including, without limitation, warranties that the
# Covered Software is free of defects, merchantable, fit for a
# particular purpose or non-infringing.
# See the Mozilla Public License v. 2.0 for more details.
#
# For more details, see http://www.mrtrix.org/.
# Lookup table for extracting the relevant grey matter parcellations from the default FreeSurfer segmentation (desikan_killiany)
0 ??? Unknown 0 0 0 0
1 L.BSTS ctx-lh-bankssts 25 100 40 255
2 L.CACG ctx-lh-caudalanteriorcingulate 125 100 160 255
3 L.CMFG ctx-lh-caudalmiddlefrontal 100 25 0 255
4 L.CU ctx-lh-cuneus 220 20 100 255
5 L.EC ctx-lh-entorhinal 220 20 10 255
6 L.FG ctx-lh-fusiform 180 220 140 255
7 L.IPG ctx-lh-inferiorparietal 220 60 220 255
8 L.ITG ctx-lh-inferiortemporal 180 40 120 255
9 L.ICG ctx-lh-isthmuscingulate 140 20 140 255
10 L.LOG ctx-lh-lateraloccipital 20 30 140 255
11 L.LOFG ctx-lh-lateralorbitofrontal 35 75 50 255
12 L.LG ctx-lh-lingual 225 140 140 255
13 L.MOFG ctx-lh-medialorbitofrontal 200 35 75 255
14 L.MTG ctx-lh-middletemporal 160 100 50 255
15 L.PHIG ctx-lh-parahippocampal 20 220 60 255
16 L.PaCG ctx-lh-paracentral 60 220 60 255
17 L.POP ctx-lh-parsopercularis 220 180 140 255
18 L.POR ctx-lh-parsorbitalis 20 100 50 255
19 L.PTR ctx-lh-parstriangularis 220 60 20 255
20 L.PCAL ctx-lh-pericalcarine 120 100 60 255
21 L.PoCG ctx-lh-postcentral 220 20 20 255
22 L.PCG ctx-lh-posteriorcingulate 220 180 220 255
23 L.PrCG ctx-lh-precentral 60 20 220 255
24 L.PCU ctx-lh-precuneus 160 140 180 255
25 L.RACG ctx-lh-rostralanteriorcingulate 80 20 140 255
26 L.RMFG ctx-lh-rostralmiddlefrontal 75 50 125 255
27 L.SFG ctx-lh-superiorfrontal 20 220 160 255
28 L.SPG ctx-lh-superiorparietal 20 180 140 255
29 L.STG ctx-lh-superiortemporal 140 220 220 255
30 L.SMG ctx-lh-supramarginal 80 160 20 255
31 L.FP ctx-lh-frontalpole 100 0 100 255
32 L.TP ctx-lh-temporalpole 70 70 70 255
33 L.TTG ctx-lh-transversetemporal 150 150 200 255
34 L.IN ctx-lh-insula 255 192 32 255
35 L.CER Left-Cerebellum-Cortex 230 148 34 255
36 L.TH Left-Thalamus 0 118 14 255
36 L.TH Left-Thalamus-Proper 0 118 14 255
37 L.CA Left-Caudate 122 186 220 255
38 L.PU Left-Putamen 236 13 176 255
39 L.PA Left-Pallidum 12 48 255 255
40 L.HI Left-Hippocampus 220 216 20 255
41 L.AM Left-Amygdala 103 255 255 255
42 L.AC Left-Accumbens-area 255 165 0 255
43 R.TH Right-Thalamus 0 118 14 255
43 R.TH Right-Thalamus-Proper 0 118 14 255
44 R.CA Right-Caudate 122 186 220 255
45 R.PU Right-Putamen 236 13 176 255
46 R.PA Right-Pallidum 13 48 255 255
47 R.HI Right-Hippocampus 220 216 20 255
48 R.AM Right-Amygdala 103 255 255 255
49 R.AC Right-Accumbens-area 255 165 0 255
50 R.BSTS ctx-rh-bankssts 25 100 40 255
51 R.CACG ctx-rh-caudalanteriorcingulate 125 100 160 255
52 R.CMFG ctx-rh-caudalmiddlefrontal 100 25 0 255
53 R.CU ctx-rh-cuneus 220 20 100 255
54 R.EC ctx-rh-entorhinal 220 20 10 255
55 R.FG ctx-rh-fusiform 180 220 140 255
56 R.IPG ctx-rh-inferiorparietal 220 60 220 255
57 R.ITG ctx-rh-inferiortemporal 180 40 120 255
58 R.ICG ctx-rh-isthmuscingulate 140 20 140 255
59 R.LOG ctx-rh-lateraloccipital 20 30 140 255
60 R.LOFG ctx-rh-lateralorbitofrontal 35 75 50 255
61 R.LG ctx-rh-lingual 225 140 140 255
62 R.MOFG ctx-rh-medialorbitofrontal 200 35 75 255
63 R.MTG ctx-rh-middletemporal 160 100 50 255
64 R.PHIG ctx-rh-parahippocampal 20 220 60 255
65 R.PaCG ctx-rh-paracentral 60 220 60 255
66 R.POP ctx-rh-parsopercularis 220 180 140 255
67 R.POR ctx-rh-parsorbitalis 20 100 50 255
68 R.PTR ctx-rh-parstriangularis 220 60 20 255
69 R.PCAL ctx-rh-pericalcarine 120 100 60 255
70 R.PoCG ctx-rh-postcentral 220 20 20 255
71 R.PCG ctx-rh-posteriorcingulate 220 180 220 255
72 R.PrCG ctx-rh-precentral 60 20 220 255
73 R.PCU ctx-rh-precuneus 160 140 180 255
74 R.RACG ctx-rh-rostralanteriorcingulate 80 20 140 255
75 R.RMFG ctx-rh-rostralmiddlefrontal 75 50 125 255
76 R.SFG ctx-rh-superiorfrontal 20 220 160 255
77 R.SPG ctx-rh-superiorparietal 20 180 140 255
78 R.STG ctx-rh-superiortemporal 140 220 220 255
79 R.SMG ctx-rh-supramarginal 80 160 20 255
80 R.FP ctx-rh-frontalpole 100 0 100 255
81 R.TP ctx-rh-temporalpole 70 70 70 255
82 R.TTG ctx-rh-transversetemporal 150 150 200 255
83 R.IN ctx-rh-insula 255 192 32 255
84 R.CER Right-Cerebellum-Cortex 230 148 34 255