No overlap between lesion and parcellated lobe

[zulualphakilo786]

Hi! This is part of the error message I receive. Could you kindly advise me how to interpret this? Many thanks

Image Exception : #63 :: No image files match: /mounts/auto/p2108glia/VBG_output/output_VBG/sub-BI_01/ROIs/LT_Hippocampus_bin
Image Exception : #22 :: Failed to read volume /mounts/auto/p2108glia/VBG_output/output_VBG/sub-BI_01/ROIs/LT_Hippocampus_bin.nii.gz
Error : No image files match: /mounts/auto/p2108glia/VBG_output/output_VBG/sub-BI_01/ROIs/LT_Hippocampus_bin
Failed to read volume /mounts/auto/p2108glia/VBG_output/output_VBG/sub-BI_01/ROIs/LT_Hippocampus_bin.nii.gz
Error : No image files match: /mounts/auto/p2108glia/VBG_output/output_VBG/sub-BI_01/ROIs/LT_Hippocampus_bin

• The LT_Hippocampus label is voxels in total, with a volume of cmm volume.
  No overlap between the lesion and LT_Hippocampus lobe.

[DrChenziyan]

This is also the error message I received:
Image Exception : #63 :: No image files match: /root/work/code/KUL_VBG/VBG_out/output_VBG/sub-03/overlap/LT_Accumbens_intersect_L_mask
Image Exception : #22 :: Failed to read volume /root/work/code/KUL_VBG/VBG_out/output_VBG/sub-03/overlap/LT_Accumbens_intersect_L_mask.nii.gz

AND not only LT_Accumbens_intersect_L_mask, others like RT_PWM_intersect_L_mask, LT_PWM_intersect_L_mask, LT_Accumbens_intersect_L_mask, etc also have the same problem.

Could you please give us some advice to solve the problem, Thank you~~

The FS log report:
percent_lobes_lesion_overlap_report.txt

[naveen27b]

Hi @DrChenziyan and @zulualphakilo786 . I am facing the similar issue with my data. I am using an MRI image from BRATS dataset and provided the segmentation tumor mask as well. The following is the portion of error I am facing.

fslmaths /mnt/d/Naveen/Jipmer_meeting/KUL_VBG_Trial/output_VBG/sub-pat001/sub-pat001_lobes_ctx_wm_fs.nii.gz -thr 3001 -uthr 3001 /mnt/d/Naveen/Jipmer_meeting/KUL_VBG_Trial/output_VBG/sub-pat001/ROIs/LT_Frontal_wm.nii.gz
Started @ 2024-09-06_14-17-55
pid = 373146 basicPID = 368119
Image Exception : #63 :: No image files match: /mnt/d/Naveen/Jipmer_meeting/KUL_VBG_Trial/output_VBG/sub-pat001/sub-pat001_lobes_ctx_wm_fs
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /mnt/d/Naveen/Jipmer_meeting/KUL_VBG_Trial/output_VBG/sub-pat001/sub-pat001_lobes_ctx_wm_fs
/home/navi/fsl/share/fsl/bin/fslmaths: line 2: 373150 Aborted /home/navi/fsl/bin/fslmaths "$@"
Success
Finished @ 2024-09-06_14-18-00

Can you help me if you have found the solution for the same? Thank you so much in advance