From a72b8fee7e9078c03d8d4b4e13341c03d401ead3 Mon Sep 17 00:00:00 2001 From: Kalin Nonchev <50597791+KalinNonchev@users.noreply.github.com> Date: Sat, 27 Apr 2024 20:46:37 +0300 Subject: [PATCH] sqlite gnomAD v4.1 --- README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 44314d4..fe02cbf 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,11 @@ #### Changelog -#### NEW version (November 2023) +#### NEW version (April 2024) + - release gnomAD WGS v4.1 and WES v4.1 + - More information [here](https://gnomad.broadinstitute.org/news/2024-04-gnomad-v4-1/). + +#### version (November 2023) - release gnomAD WGS v4.0 and WES v4.0 - `gnomad_version`=["v2"|"v3"|"v4"] argument has to be specified when initializing the database - minor fixes @@ -33,6 +37,8 @@ It extracts from a gnomAD vcf about 23 variant annotations. You can find further I have preprocessed and created sqlite3 files for gnomAD for you, which can be easily downloaded from here. They contain all variants on the 24 standard chromosomes. +- WGS gnomAD v4.1 (hg38, **759'336'320** variants) 44.3G zipped, 91G in total - https://zenodo.org/records/11077663/files/gnomad_db.sqlite3.gz?download=1 +- WES gnomAD v4.1 (hg38, **183'558'769** variants) 8.3G zipped, 19G in total - https://zenodo.org/records/11076395/files/gnomad_db.sqlite3.gz?download=1 - WGS gnomAD v4.0 (hg38, **759'336'320** variants) 44.3G zipped, 91G in total - https://zenodo.org/records/10453271/files/gnomad_db_wgs_v4.0.sqlite3.gz?download=1 - WES gnomAD v4.0 (hg38, **183'558'769** variants) 8.3G zipped, 19G in total - https://zenodo.org/records/10455901/files/gnomad_db_wes_v4.0.sqlite3.gz?download=1 - WGS gnomAD v3.1.2 (hg38, **759'302'267** variants) 46.2G zipped, 98G in total - https://zenodo.org/record/6818606/files/gnomad_db_v3.1.2.sqlite3.gz?download=1