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Welcome to the KAMIStudio developer's wiki!

KAMIStudio is a bio-curation environment for modelling cellular signalling implementing the KAMI framework. It is also a part of a larger Kappa project. See a short tool paper.

Here are some pages that may interest you:

• Structure of the project
• Dev installation and configuration
• Docker container

TODO

• Add a possibility to select seed genes when instantiating a new model (so that we can use only a subset of all protoforms).
• Add Kappa generation directly from a corpus (see CorpusKappaGenerator in kami.exporters.kappa).
• Add Kappa initial conditions to the interface (see KappaInitialCondition in kami.exporters.kappa, possibility to specify initial conditions by clicking on the nodes of the action graph, maybe similar to the way new protein definitions are added).
• Add Kappa observables to the interface (ass in the previous bullet point).
• Add an interfaces for making queries in KamiQL (see kamiql in the KAMI repository).