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article_fields_table.html
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article_fields_table.html
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<!DOCTYPE html>
<html>
<head>
<title>BioDEX Article Fields</title>
<style>
table {
width: 100%;
border-collapse: collapse;
font-family: "Helvetica Neue", Arial, sans-serif;
}
th, td {
padding: 8px;
text-align: left;
word-wrap: break-word;
}
th:nth-child(1), td:nth-child(1) {
width: 40%;
}
th:nth-child(2), td:nth-child(2) {
width: 60%;
}
.title {
font-family: "Helvetica Neue", Arial, sans-serif;
font-size: 18px;
font-weight: bold;
margin-bottom: 10px;
}
</style>
</head>
<body>
<div class="title">BioDEX Article Fields</div>
<table border="1" class="dataframe">
<thead>
<tr style="text-align: right;">
<th>fields</th>
<th>description</th>
</tr>
</thead>
<tbody>
<tr>
<td>title</td>
<td>Title of the article</td>
</tr>
<tr>
<td>pmid</td>
<td>PubMed ID</td>
</tr>
<tr>
<td>issue</td>
<td>The Issue of the journal</td>
</tr>
<tr>
<td>pages</td>
<td>Pages of the article in the journal publication</td>
</tr>
<tr>
<td>abstract</td>
<td>Abstract of the article</td>
</tr>
<tr>
<td>fulltext</td>
<td>The full text associated with the article from the PubMed Central Open Access Subset, if available</td>
</tr>
<tr>
<td>fulltext_license</td>
<td>The license associated with the full text paper from the PubMed Central Open Access Subset, if available</td>
</tr>
<tr>
<td>journal</td>
<td>Journal of the given paper</td>
</tr>
<tr>
<td>authors</td>
<td>Authors, each separated by ';'</td>
</tr>
<tr>
<td>affiliations</td>
<td>The affiliations of the authors</td>
</tr>
<tr>
<td>pubdate</td>
<td>Publication date. Defaults to year information only.</td>
</tr>
<tr>
<td>doi</td>
<td>DOI</td>
</tr>
<tr>
<td>medline_ta</td>
<td>Abbreviation of the journal name</td>
</tr>
<tr>
<td>nlm_unique_id</td>
<td>NLM unique identification</td>
</tr>
<tr>
<td>issn_linking</td>
<td>ISSN linkage, typically use to link with Web of Science dataset</td>
</tr>
<tr>
<td>country</td>
<td>Country extracted from journal information field</td>
</tr>
<tr>
<td>mesh_terms</td>
<td>List of MeSH terms with corresponding MeSH ID, each separated by ';' e.g. 'D000161:Acoustic Stimulation; D000328:Adult; ...'</td>
</tr>
<tr>
<td>publication_types</td>
<td>List of publication type list each separated by ';' e.g. 'D016428:Journal Article'</td>
</tr>
<tr>
<td>chemical_list</td>
<td>List of chemical terms, each separated by ';'</td>
</tr>
<tr>
<td>keywords</td>
<td>List of keywords, each separated by ';'</td>
</tr>
<tr>
<td>reference</td>
<td>String of PMID each separated by ';' or list of references made to the article</td>
</tr>
<tr>
<td>delete</td>
<td>Boolean, 'False' means paper got updated so you might have two</td>
</tr>
<tr>
<td>pmc</td>
<td>PubMed Central ID</td>
</tr>
<tr>
<td>other_id</td>
<td>Other IDs found, each separated by ';'</td>
</tr>
</tbody>
</table>
</body>
</html>