Cannot install metis itself

[belbasi]

Hi there,

I'm new to METIS and really need METIS for what I'm doing. I was trying to install it based on the guid on your README here. I cloned METIS and cloned GKlib and installed it following its README, and ran

make config shared=1 cc=gcc prefix=~/local
make install

for METIS.

make install throws an error though no matter what I do. I tried installing it in many different but keep coming back to the same Undefined symbols for architecture arm64 error.

I am trying to install on Mac M1 and wonder if that has something to do with this error?

Anyone can help please? Thank you.

My error:
Linking C shared library libmetis.dylib cd /Users/mab/src/METIS/build/libmetis && /opt/homebrew/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /usr/bin/clang -DLINUX -D_FILE_OFFSET_BITS=64 -DMACOS -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.2.sdk -dynamiclib -Wl,-headerpad_max_install_names -o libmetis.dylib -install_name /Users/mab/src/METIS/build/libmetis/libmetis.dylib CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o -L/Users/mab/local/lib Undefined symbols for architecture arm64: "_gk_CPUSeconds", referenced from: _libmetis__CoarsenGraph in coarsen.c.o _libmetis__CoarsenGraph in coarsen.c.o _libmetis__Match_RM in coarsen.c.o _libmetis__Match_RM in coarsen.c.o _libmetis__Match_SHEM in coarsen.c.o _libmetis__Match_SHEM in coarsen.c.o _CoarsenGraphNlevels in coarsen.c.o _CoarsenGraphNlevels in coarsen.c.o ... "_gk_cur_jbufs", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o _METIS_PartMeshNodal in meshpart.c.o ... "_gk_errexit", referenced from: _libmetis__CoarsenGraph in coarsen.c.o _CoarsenGraphNlevels in coarsen.c.o _libmetis__EliminateComponents in contig.c.o _libmetis__graph_ReadFromDisk in graph.c.o _libmetis__Init2WayPartition in initpart.c.o _libmetis__InitSeparator in initpart.c.o _METIS_PartGraphKway in kmetis.c.o ... "_gk_free", referenced from: _libmetis__CheckGraph in checkgraph.c.o _libmetis__FixGraph in checkgraph.c.o _libmetis__CompressGraph in compress.c.o _libmetis__PruneGraph in compress.c.o _libmetis__FindPartitionInducedComponents in contig.c.o _libmetis__FindPartitionInducedComponents in contig.c.o _libmetis__FindPartitionInducedComponents in contig.c.o ... "_gk_idxsmalloc", referenced from: _libmetis__ipqCreate in gklib.c.o _libmetis__ipqInit in gklib.c.o _libmetis__rpqCreate in gklib.c.o _libmetis__rpqInit in gklib.c.o "_gk_jbufs", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o _METIS_PartMeshNodal in meshpart.c.o ... "_gk_log2", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_PartGraphKway in kmetis.c.o "_gk_malloc", referenced from: _libmetis__FixGraph in checkgraph.c.o _libmetis__iargmax_n in gklib.c.o _libmetis__ikvmalloc in gklib.c.o _libmetis__rargmax_n in gklib.c.o _libmetis__rkvmalloc in gklib.c.o _libmetis__imalloc in gklib.c.o _libmetis__ismalloc in gklib.c.o ... "_gk_malloc_cleanup", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o _METIS_PartMeshDual in meshpart.c.o ... "_gk_malloc_init", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o _METIS_PartMeshDual in meshpart.c.o _METIS_NodeND in ometis.c.o _METIS_PartGraphRecursive in pmetis.c.o ... "_gk_mcoreCreate", referenced from: _libmetis__AllocateWorkSpace in wspace.c.o "_gk_mcoreDestroy", referenced from: _libmetis__FreeWorkSpace in wspace.c.o "_gk_mcoreMalloc", referenced from: _libmetis__wspacemalloc in wspace.c.o _libmetis__iwspacemalloc in wspace.c.o _libmetis__rwspacemalloc in wspace.c.o _libmetis__ikvwspacemalloc in wspace.c.o "_gk_mcorePop", referenced from: _libmetis__wspacepop in wspace.c.o "_gk_mcorePush", referenced from: _libmetis__wspacepush in wspace.c.o "_gk_randinit", referenced from: _libmetis__isrand in gklib.c.o "_gk_randint32", referenced from: _libmetis__irand in gklib.c.o _libmetis__irandInRange in gklib.c.o _libmetis__irandArrayPermute in gklib.c.o _libmetis__irandArrayPermute in gklib.c.o _libmetis__irandArrayPermute in gklib.c.o _libmetis__irandArrayPermute in gklib.c.o _libmetis__irandArrayPermuteFine in gklib.c.o ... "_gk_realloc", referenced from: _libmetis__irealloc in gklib.c.o _libmetis__rrealloc in gklib.c.o _libmetis__ikvrealloc in gklib.c.o _libmetis__rkvrealloc in gklib.c.o _libmetis__cnbrpoolGetNext in wspace.c.o _libmetis__vnbrpoolGetNext in wspace.c.o "_gk_rmpath", referenced from: _libmetis__graph_WriteToDisk in graph.c.o _libmetis__graph_WriteToDisk in graph.c.o _libmetis__graph_ReadFromDisk in graph.c.o _libmetis__graph_ReadFromDisk in graph.c.o "_gk_sigtrap", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o _METIS_PartMeshDual in meshpart.c.o _METIS_NodeND in ometis.c.o _METIS_PartGraphRecursive in pmetis.c.o ... "_gk_siguntrap", referenced from: _METIS_PartGraphKway in kmetis.c.o _METIS_PartGraphKway in kmetis.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToDual in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_MeshToNodal in mesh.c.o _METIS_PartMeshNodal in meshpart.c.o ... ld: symbol(s) not found for architecture arm64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [libmetis/libmetis.dylib] Error 1 make[1]: *** [libmetis/CMakeFiles/metis.dir/all] Error 2 make: *** [all] Error 2

[gfaster]

This looks like the same as #83 - try the CMake patch shown there