.travis.yml

sudo: required
language: python
python: 3.6


install:
- pip install .

script:
- wget -O Zeisel_reg.h5 "https://drive.google.com/uc?export=download&id=1hprRFkEk8q27kqrt9RLvY6aqu6XWPb2C"
- sccaf -i Zeisel_reg.h5 --optimise --skip-assessment -o output.h5 -s louvain -a 0.89 --produce-rounds-summary
- echo "Checking if output file is present..."
- test -f output.h5 && echo "Output file exist"
- echo "Checking if rounds file is present..."
- test -f rounds.txt && echo "Rounds file exist"
- mkdir -p results
- sccaf-assess -i output.h5 -o results/sccaf_assess_3.txt --slot-for-existing-clustering L1_Round3 --iterations 6
- sccaf-assess -i output.h5 -o results/sccaf_assess_4.txt --slot-for-existing-clustering L1_Round4 --iterations 6
- test -f results/sccaf_assess_3.txt && test -f results/sccaf_assess_4.txt
- sccaf-assess-merger -i ./results -r rounds.txt -o report_merge.pdf
- test -f report_merge.pdf
- sccaf-regress-out -i Zeisel_reg.h5 -k 'sex,well' -o regressed.h5ad

deploy:
  provider: pypi
  user: __token__
  password:
    secure: 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
  distributions: sdist bdist_wheel
  on:
    branch: master