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Ingest drug -> target information from SMS (small molecular suite) #329

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justaddcoffee opened this issue Sep 3, 2020 · 0 comments
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new data source new data source we'd like to ingest

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@justaddcoffee
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Name of the dataset
Ingest drug -> target information from SMS, available here are a tar file:
https://labsyspharm.shinyapps.io/smallmoleculesuite/_w_4fb0f5cc/sms/assets/downloads/sms_tables_chembl_v25.tar

Mapping or relevant fields
A good start would be to map drugs (chembl IDs) to targets (uniprot IDs) using this file:
lsp_target_mapping.csv.gz

and possibly also add the TAS score in this file for each interaction:
lsp_tas.csv.gz

Additional context
From discussion with Justin, Chris and Nienke Moret

@justaddcoffee justaddcoffee added the new data source new data source we'd like to ingest label Sep 3, 2020
@justaddcoffee justaddcoffee changed the title Inget drug -> target information from SMS (small molecular suite) Ingest drug -> target information from SMS (small molecular suite) Sep 14, 2020
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