Documentation for other options

[jkosinski]

In this doc

AlphaPulldown/README.md

Line 188 in f5c2295

# Snakemake AlphaPulldown

add some information how to see the command line options for create_feature_arguments and structure_inference_arguments options (e..g mmseqs2, custom multimeric templates etc.). The config.yaml file only includes some of them. I guess users could look into the documentation of the individual scripts but 1) to the new users it will not be obvious they should do it and how the scripts correspond to the steps 2) I guess there will be always some options not included in this readme here. Is there some -h option one could run with snakamake pipeline option?