MEME_batch.bf

 #!/bin/bash


/* the options passed to the GUI are encoded here */
inputRedirect = {};
inputRedirect["01"]="Universal";
inputRedirect["02"]="PATH/original_codon.nuc";    ## This will be automatically changed by the .sh script
inputRedirect["03"]="Y";
inputRedirect["04"]="All";
inputRedirect["05"]="0.1";
ExecuteAFile ( "/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf", inputRedirect );


##pay attention to change this file path to the location in your computer:
## /usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf