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How do you make a custom diamond database for use with Autometa? |
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The author of diamond maintains a docker image of diamond. Choose a versioned image to pull down from here: For this example we'll use the v2.0.9 version:
The protein fasta file I want to turn into a dmnd database is located in the directory: Replace that path and filename in the command below with your own to generate a nr.dmnd database. Also change
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The author of diamond maintains a docker image of diamond.
Choose a versioned image to pull down from here:
For this example we'll use the v2.0.9 version:
The protein fasta file I want to turn into a dmnd database is located in the directory:
home/chase/Documents/large_db
and is named:
my_fasta.faa
Replace that path and filename in the command below with your own to generate a nr.dmnd database. Also change
my_dmnd_db
to whatever you want the database to be named,.dmnd
will be appended to this.