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Add threads for for bowtie2-build #263

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chasemc opened this issue Apr 18, 2022 · 0 comments
Open

Add threads for for bowtie2-build #263

chasemc opened this issue Apr 18, 2022 · 0 comments
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@kaw97 @shaneroesemann @ajlail98
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enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code

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@chasemc
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chasemc commented Apr 18, 2022 •
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The number of cpus is already passed to the alignment step (see ${task.cpus}) so pass it to the build step as well

$ bowtie2-build --help | grep "threads"
  --threads <int>         # of threads

The commands are here:

Autometa/modules/local/align_reads.nf

Line 37 in b1ec370

${options.args} \\

@chasemc chasemc added enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code labels Apr 18, 2022
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@kaw97 kaw97

@shaneroesemann shaneroesemann

@ajlail98 ajlail98

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enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
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@chasemc @kaw97 @shaneroesemann @ajlail98