Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

gCTF script not creating log file #233

Closed
hansenbry opened this issue Sep 11, 2018 · 2 comments
Closed

gCTF script not creating log file #233

hansenbry opened this issue Sep 11, 2018 · 2 comments

Comments

@hansenbry
Copy link

When running gCTF (on average) I get the below error message on all my data. The ctf correction appears to have been done, but the ctfres value can't be populated. Any ideas on what I need to fix?

Processing done successfully.
Average defocus = 1.976 microns
CTF Figure of Merrit: 0.181696
fh = iter(open(fname, 'U'))
IOError: [Errno 2] No such file or directory: 'movie_aligned_Sum_EPA.log'
############################process_ctf finished.#############################
Traceback (most recent call last):
File "/opt/rml/focus/scripts/proc/gctfres.py", line 11, in
epa = np.loadtxt( epa_file, skiprows=1 ).astype( 'float32' )
File "/home/hansenbry/EMAN2/lib/python2.7/site-packages/numpy/lib/npyio.py", line 734, in loadtxt

@hansenbry
Copy link
Author

Just checking in to see if there are any updates to this issue?

@rdrighetto
Copy link
Contributor

Hi Bryan,

I was not able to reproduce this issue, which has been previously reported (see #206) . Most likely it's a Gctf version-related bug. We are using Gctf v1.06 with CUDA v8.0. Please also make sure you use the latest FOCUS release from our website.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants