This project can now be found at https://gitbio.ens-lyon.fr/LBMC/Jalinot/criblejurkat
This repository is an R package for the automatic analaysis for fcs data for the jurkat drug crible project.
These instructions will help you setup your environement to use this package
On ubunutu, you needd R and other packages :
apt-get update
apt-get install r-base libssl-dev libcurl4-openssl-dev libssh2-1-dev ca-certificates libxml2-dev r-cran-nloptr libboost-regex-dev In R, you need to install the packages devtools:
install.packages("devtools")You can install the package directly from github with the following command:
devtools::install_github("LBMC/criblejurkat")To analyse a single fcs folder (in the set folder):
criblejurkat::set_analysis("data/set/")To analyse many fcs folders (in the sets folder)
criblejurkat::analysis("data/")The analysis results will be copied in a results/set or results/sets/setx folder
- Laurent Modolo - Initial work
See also the list of contributors who participated in this project.
This project is licensed under the CeCiLL License- see the LICENSE file for details