This repo is an R package with the nematode development references for age estimation using the RAPToR tool.
To install the package, run the following in your R console :
if (!requireNamespace("remotes", quietly = TRUE))
install.packages("remotes")
remotes::install_github("LBMC/wormRef", build_vignettes = T)- Built a function factory to simplify ref. building code
- Added reference metadata to comply with RAPToR v1.2 update.
- Added time range/unit info in list_refs
- Added an aging reference (
Cel_aging_1)
- Added Meeuse et al. (2020) reference spanning L1 to adult development
- Fixed plot_refs not diplaying
- Removed doc typos
- Updated reference parameters with RAPToR bug fix
- Changed all RPKM to TPM
- Updated the embryo reference with stricter quality filter on samples
- Updated the internal structure to match the new
RAPToRinterface witth data-packages. - Re-evaluated optimal interpolation of reference series using the new GEIM approach of
RAPToR.
- Created the data package.