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Implement coordinate hit and run sampler #6

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stelmo opened this issue Sep 2, 2022 · 3 comments
Open

Implement coordinate hit and run sampler #6

stelmo opened this issue Sep 2, 2022 · 3 comments

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@stelmo
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stelmo commented Sep 2, 2022

The current state of the art sampler is CCHR (https://academic.oup.com/bioinformatics/article/33/11/1741/2964731). We should implement this. A side goal would be to add some sort of GPU functionality, but most users won't have a gpu, so I would put gpu stuff as secondary importance.
@exaexa
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exaexa commented May 3, 2023

Can we move this to the CuFluxSampler repo?

@stelmo
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stelmo commented May 3, 2023

100% please move this

@exaexa exaexa transferred this issue from LCSB-BioCore/COBREXA.jl May 3, 2023
@exaexa
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exaexa commented May 3, 2023

The other question is if (how much) the coordinate methods are viable for GPUs. Might be nice to have approximate coordinate computation (lanczos-style) because just SVDing everything won't be of much help.

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@exaexa @stelmo