Setting up team's Mac mini #1242

chapman39 · 2024-10-04T00:30:38Z

Some things I've updated (am updating) during the process of setting up the Serac shared Mac mini.

Features:

Update example mac spack.yaml
- Separate Brew packages from /usr packages
Update docs on how to build on Mac (package versions, adding additional packages for simpler concretizer tree, etc.)
Fixes Mac devtool issues by creating a Python venv before calling uberenv (Fixes +devtools fails to concretize on macos #1206)
Removes BoundaryCond.DirectTrueDofs test, which was failing on MacMini only (Fixes boundary_cond test fails on macos #1207)
Setup cron job testing Serac build/ tests
Document how to setup an additional user on the Mac mini

Readthedocs:

chapman39 · 2024-10-04T00:32:58Z

Installing the latest llvm/ clang (@19.1.1) caused some problems building Axom, so to avoid that used brew install llvm@14. Here is the build error I got:

==> Installing axom-0.9.0.1-c2vvp4ki46aesbfiafjfnhpil35x3hqr [37/39]
==> No binary for axom-0.9.0.1-c2vvp4ki46aesbfiafjfnhpil35x3hqr found: installing from source
==> Ran patch() for axom
==> axom: Executing phase: 'initconfig'
==> axom: Executing phase: 'cmake'
==> axom: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j10'

...

  >> 370    /Users/chapman39/dev/serac/serac_tpls/spack/opt/spack/darwin-sonoma-m2/clang-19.1.1/raja-2024.02.0-cvabateje3nivxumnufmwkvhqdhawjww/include/RAJA/pattern/kernel/Tile.hpp:174:30: error: no member named 'block_id' in 'I
            terableTiler<Iterable>'
     371      174 |       return block_id != rhs.block_id;
     372          |                          ~~~ ^

…y default)

…mini-build

…into task/chapman39/macmini-build

…mini-build

…into task/chapman39/macmini-build

chapman39 · 2024-12-18T19:17:55Z

@btalamini Here is a summary of some of the linker warnings the mac mini build gets

 9013 ld: warning: reexported library with install name '/opt/homebrew/opt/llvm@14/lib/libunwind.1.dylib' found at '/opt/homebrew/Cellar/llvm@14/14.0.6/lib/libunwind.1.0.dylib' couldn't be matched with any parent library and will be linked directly
...
 9143 ld: warning: -ld_classic is deprecated and will be removed in a future release
...
 9046 ld: warning: duplicate -rpath '/opt/homebrew/lib' ignored
 9047 ld: warning: duplicate -rpath '/Users/chapman39/dev/serac/serac_tpls/spack/opt/spack/darwin-sonoma-aarch64/clang-14.0.6/parmetis-4.0.3-faxw36ybmuntuwxu5p3zka57sbf3yyfe/lib' ignored
...
 9079 ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
 9080 ld: warning: could not create compact unwind for _petscbagregisterenum_: does not use standard frame
 9081 ld: warning: could not create compact unwind for ___petscsys_MOD_petscinitializenoarguments: does not use standard frame

scripts/shared-macmini/build-and-test.sh

src/docs/sphinx/dev_guide/macmini.rst

…into task/chapman39/macmini-build

scripts/shared-macmini/build-and-test.sh

tupek2 · 2025-01-03T00:17:00Z

Installing the latest llvm/ clang (@19.1.1) caused some problems building Axom, so to avoid that used brew install llvm@14. Here is the build error I got:

==> Installing axom-0.9.0.1-c2vvp4ki46aesbfiafjfnhpil35x3hqr [37/39]
==> No binary for axom-0.9.0.1-c2vvp4ki46aesbfiafjfnhpil35x3hqr found: installing from source
==> Ran patch() for axom
==> axom: Executing phase: 'initconfig'
==> axom: Executing phase: 'cmake'
==> axom: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j10'

...

  >> 370    /Users/chapman39/dev/serac/serac_tpls/spack/opt/spack/darwin-sonoma-m2/clang-19.1.1/raja-2024.02.0-cvabateje3nivxumnufmwkvhqdhawjww/include/RAJA/pattern/kernel/Tile.hpp:174:30: error: no member named 'block_id' in 'I
            terableTiler<Iterable>'
     371      174 |       return block_id != rhs.block_id;
     372          |                          ~~~ ^

FYI, I was able to get things compiled with llvm19.1.6 by pointing instead to ^raja@main

chapman39 · 2025-01-03T21:40:09Z

FYI, I was able to get things compiled with llvm19.1.6 by pointing instead to ^raja@main

@tupek2 i made an issue here LLNL/radiuss-spack-configs#115 we should update spack and radiuss-spack-configs next tpl build

EDIT: nvm. updating to [email protected] will resolve the issue, and that version is already in radiuss-spack-configs. we may need to update the radiuss-spack-configs submodule though.

white238 · 2025-01-16T21:38:59Z

scripts/shared-macmini/build-and-test.sh

+cd $PROJECT_DIR
+
+# Update Serac
+git checkout task/chapman39/macmini-build >> $OUTPUT_LOG 2>&1 # TODO CHANGE TO DEVELOP


It should be helpful when reading the log to have some large comment breaks. If things go wrong it helps associating errors with commands. Something like :

########### Git Checkout ######### // git command ########### End Git Checkout ######

ended up with a slightly different approach - wrapping printing, running, logging commands in a function. heres a sample

#################### # git pull #################### X11 forwarding request failed on channel 0 Already up to date. #################### # git submodule update --init --recursive #################### error: Your local changes to the following files would be overwritten by checkout: uberenv.py Please commit your changes or stash them before you switch branches. Aborting Unable to checkout '0a39ce245d7866374bf4724bec9da6ab4cf4dfcc' in submodule path 'scripts/uberenv' #################### # mutt -a /usr/workspace/meemee/serac/repo/macmini-build-and-test-2025_01_17_13_46_52.log -s Serac Succeeded! MacMini build and test report Fri Jan 17 13:46:57 PST 2025 -- [email protected] ####################

src/docs/sphinx/quickstart.rst

white238

Small nitpicks but otherwise looks great. Thanks @chapman39 !

…mini-build

Co-authored-by: Chris White <[email protected]>

update mac tpl install versions and spack yaml

60daa63

chapman39 added documentation Improvements or additions to documentation CI Continuous Integration labels Oct 4, 2024

chapman39 self-assigned this Oct 4, 2024

chapman39 added 3 commits October 3, 2024 17:38

update note about devtools, remove section about petsc (since built b…

52ea5d3

…y default)

Merge remote-tracking branch 'origin/develop' into task/chapman39/mac…

483eb26

…mini-build

separate /usr and brew pkgs, mention python venv in docs

f1d2b5d

chapman39 changed the title ~~Setting up team's MacMini~~ Setting up team's Mac mini Oct 11, 2024

chapman39 and others added 15 commits October 31, 2024 11:38

Merge remote-tracking branch 'origin/develop' into task/chapman39/mac…

4becb06

…mini-build

Remove failing BC DirectTrueDofs test

cfa0b57

docs clarifications and syntax cleanup

b0069dc

ci mac cron job script init

a4f4650

add quotes

441eab1

clear previous builds before running new ci job

8a823ce

add to output

788dd15

Merge branch 'develop' into task/chapman39/macmini-build

7d94517

update environment

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Merge branch 'task/chapman39/macmini-build' of github.com:LLNL/serac …

0b90a5a

…into task/chapman39/macmini-build

rm python prefix

ed4c122

python3

2e815a6

Merge remote-tracking branch 'origin/develop' into task/chapman39/mac…

850dfbf

…mini-build

create page explaining how to add a new user to shared mac mini

029ca7a

Merge branch 'task/chapman39/macmini-build' of github.com:LLNL/serac …

fc2de66

…into task/chapman39/macmini-build

chapman39 marked this pull request as ready for review December 6, 2024 00:30

chapman39 requested review from white238, btalamini and tupek2 December 6, 2024 00:30

chapman39 added 2 commits December 5, 2024 16:45

fix docs

6c32386

fix links

662758f

chapman39 commented Dec 18, 2024

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chapman39 and others added 5 commits December 18, 2024 11:21

Update src/docs/sphinx/dev_guide/macmini.rst

5733e10

provide cron example

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Merge branch 'task/chapman39/macmini-build' of github.com:LLNL/serac …

1b550be

…into task/chapman39/macmini-build

syntax

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Merge branch 'develop' into task/chapman39/macmini-build

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chapman39 added the ready for review Ready for active inspection by reviewers label Dec 30, 2024

Merge branch 'develop' into task/chapman39/macmini-build

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chapman39 commented Dec 30, 2024

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chapman39 and others added 2 commits December 30, 2024 11:18

Update scripts/shared-macmini/build-and-test.sh

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Merge branch 'develop' into task/chapman39/macmini-build

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chapman39 mentioned this pull request Jan 3, 2025

update raja spack package LLNL/radiuss-spack-configs#115

Closed

Merge branch 'develop' into task/chapman39/macmini-build

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white238 reviewed Jan 16, 2025

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chapman39 and others added 5 commits January 17, 2025 13:21

Merge remote-tracking branch 'origin/develop' into task/chapman39/mac…

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…mini-build

add print log run fx

b5ce89b

feedback

e154eef

Update src/docs/sphinx/quickstart.rst

c0535d6

Co-authored-by: Chris White <[email protected]>

Update src/docs/sphinx/quickstart.rst

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Co-authored-by: Chris White <[email protected]>

chapman39 enabled auto-merge January 17, 2025 22:03

chapman39 merged commit 704006a into develop Jan 17, 2025
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Setting up team's Mac mini #1242

Setting up team's Mac mini #1242

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Setting up team's Mac mini #1242

Setting up team's Mac mini #1242

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