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DESCRIPTION
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DESCRIPTION
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Package: ninetails
Type: Package
Title: Nonadenosine Nucleotides in Poly(A) Tails
Version: 1.0.2
Author: Natalia Gumińska
Maintainer: The package maintainer <[email protected]>
Description: Finds noncanonical (nonadenosine) nucleotides
in poly(A) tails of Oxford Nanopore direct RNA sequencing reads
using convolutional neural network based on raw current signal.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Imports:
assertthat,
checkmate,
doSNOW,
dplyr,
forcats,
foreach,
ggplot2,
keras,
magrittr,
parallel,
purrr,
reshape2,
rhdf5,
rlang,
rrapply,
stats,
stringr,
tibble,
tidyr,
tidyselect,
utils,
vroom
Depends:
R (>= 3.5.0)
Suggests:
testthat (>= 3.0.0),
biomaRt (>= 2.40.0),
cowplot,
ggdist,
gghalves,
patchwork
Config/testthat/edition: 3