diff --git a/augur/analyze.py b/augur/analyze.py index 4d907b7..1d228db 100644 --- a/augur/analyze.py +++ b/augur/analyze.py @@ -157,7 +157,7 @@ def get_derivatives(self, force=False, method='5pt_stencil'): if (self.derivatives is None) or (force): if '5pt_stencil' in method: self.derivatives = five_pt_stencil(lambda y: self.f(y, self.var_pars, self.pars_fid, - self.req_params), + self.req_params), self.x, h=float(self.config['step'])) elif 'numdifftools' in method: import numdifftools as nd @@ -166,9 +166,9 @@ def get_derivatives(self, force=False, method='5pt_stencil'): else: ndkwargs = {} self.derivatives = nd.Gradient(lambda y: self.f(y, self.var_pars, self.pars_fid, - self.req_params), - step=float(self.config['step']), - **ndkwargs)(self.x).T + self.req_params), + step=float(self.config['step']), + **ndkwargs)(self.x).T else: raise ValueError(f'Selected method: `{method}` is not available. \ Please select 5pt_stencil or numdifftools.') diff --git a/augur/tests/test_analyze.py b/augur/tests/test_analyze.py index a6c1e19..c6d1080 100644 --- a/augur/tests/test_analyze.py +++ b/augur/tests/test_analyze.py @@ -1,8 +1,8 @@ from augur.analyze import Analyze + def test_analyze(): fish = Analyze('./examples/config_test.yml') - ders = fish.get_derivatives() - fishmat = fish.get_fisher_matrix() - b_vec = fish.compute_fisher_bias() - \ No newline at end of file + fish.get_derivatives() + fish.get_fisher_matrix() + fish.compute_fisher_bias() diff --git a/augur/tests/test_generate.py b/augur/tests/test_generate.py index 258773d..095cfb8 100644 --- a/augur/tests/test_generate.py +++ b/augur/tests/test_generate.py @@ -2,4 +2,4 @@ def test_generate(): - lk = generate('./examples/config_test.yml') \ No newline at end of file + generate('./examples/config_test.yml')