DESCRIPTION

Package: bluster
Version: 1.15.1
Date: 2024-09-05
Title: Clustering Algorithms for Bioconductor
Description: 
    Wraps common clustering algorithms in an easily extended S4 framework.
    Backends are implemented for hierarchical, k-means and graph-based clustering.
    Several utilities are also provided to compare and evaluate clustering results.
Authors@R: 
    c(
        person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
        person("Stephanie", "Hicks", role="ctb"),
        person("Basil", "Courbayre", role="ctb"),
        person("Tuomas", "Borman", role="ctb"),
        person("Leo", "Lahti", role="ctb")
    )
Imports: 
    stats, 
    methods, 
    utils, 
    cluster,
    Matrix,
    Rcpp, 
    igraph,
    S4Vectors, 
    BiocParallel,
    BiocNeighbors
Suggests: 
    knitr,
    rmarkdown,
    testthat,
    BiocStyle,
    dynamicTreeCut,
    scRNAseq,
    scuttle,
    scater,
    scran,
    pheatmap,
    viridis,
    mbkmeans,
    kohonen,
    apcluster,
    DirichletMultinomial,
    vegan,
    fastcluster
biocViews: 
    ImmunoOncology, 
    Software, 
    GeneExpression,
    Transcriptomics, 
    SingleCell, 
    Clustering
LinkingTo: 
    Rcpp,
    assorthead
Collate:
    AllClasses.R
    AllGenerics.R
    AgnesParam.R
    approxSilhouette.R
    bluster-package.R
    DbscanParam.R
    DianaParam.R
    AffinityParam.R
    BlusterParam.R
    bootstrapStability.R
    ClaraParam.R
    clusterRMSD.R
    clusterSweep.R
    compareClusterings.R
    DmmParam.R
    FixedNumberParam.R
    HclustParam.R
    HierarchicalParam.R
    KmeansParam.R
    linkClusters.R
    makeSNNGraph.R
    MbkmeansParam.R
    mergeCommunities.R
    neighborPurity.R
    nestedClusters.R
    NNGraphParam.R
    pairwiseModularity.R
    pairwiseRand.R
    PamParam.R
    RcppExports.R
    SomParam.R
    TwoStepParam.R
    utils.R
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++17
RoxygenNote: 7.3.2
Encoding: UTF-8