From 7a1bc6d6808db91314e9f71d517cd2caeede35ad Mon Sep 17 00:00:00 2001 From: Liu Date: Tue, 3 Dec 2024 10:33:02 +0100 Subject: [PATCH] Update tabel index --- report/templates/contents_aln.html.j2 | 9 ++++----- report/templates/contents_overview.html.j2 | 6 +++--- report/templates/contents_rna.html.j2 | 2 +- report/templates/contents_var.html.j2 | 2 +- 4 files changed, 9 insertions(+), 10 deletions(-) diff --git a/report/templates/contents_aln.html.j2 b/report/templates/contents_aln.html.j2 index 3f80746..1ad2480 100644 --- a/report/templates/contents_aln.html.j2 +++ b/report/templates/contents_aln.html.j2 @@ -1,9 +1,10 @@ +

Alignment Statistics

{% set stats = modules.snv_indels.stats %}
-

Table 4 | Alignment count statistics

+

Table 3 | Alignment count statistics

@@ -49,7 +50,7 @@
-

Table 5 | Insert size statistics

+

Table 4 | Insert size statistics

@@ -70,6 +71,4 @@ -
{{ stats.ins.min_insert_size|show_int }}
- - + \ No newline at end of file diff --git a/report/templates/contents_overview.html.j2 b/report/templates/contents_overview.html.j2 index a95bc8c..fd62823 100644 --- a/report/templates/contents_overview.html.j2 +++ b/report/templates/contents_overview.html.j2 @@ -2,7 +2,7 @@
-

Table 7 | High-impact variants in genes of interest

+

Table 6 | High-impact variants in genes of interest

@@ -46,7 +46,7 @@
-

Table 8 | Detected fusion genes

+

Table 7 | Detected fusion genes

@@ -78,7 +78,7 @@
-

Table 9 | Detected reciprocal soft clip events

+

Table 8 | Detected reciprocal soft clip events

diff --git a/report/templates/contents_rna.html.j2 b/report/templates/contents_rna.html.j2 index 5dd4748..6ba23a4 100644 --- a/report/templates/contents_rna.html.j2 +++ b/report/templates/contents_rna.html.j2 @@ -3,7 +3,7 @@ {% set stats = modules.snv_indels.stats %}
-

Table 6 | Base-level annotation statistics

+

Table 5 | Base-level annotation statistics

diff --git a/report/templates/contents_var.html.j2 b/report/templates/contents_var.html.j2 index 2e09a91..e61583e 100644 --- a/report/templates/contents_var.html.j2 +++ b/report/templates/contents_var.html.j2 @@ -3,7 +3,7 @@

Variant Calling Results

-{% set vars = {'figure_idx': 1, 'table_idx': 10} %} +{% set vars = {'figure_idx': 1, 'table_idx': 9} %} {% for gene in stats.cov %} {% for tid, exons in stats.cov[gene].items() %}