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Surveillance testing of SARS-CoV-2

This repository contain code to accompany the manuscript Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance by Daniel B. Larremore, Bryan Wilder, Evan Lester, Soraya Shehata, James M. Burke, James A. Hay, Milind Tambe, Michael J. Mina, Roy Parker.

The code requires:

  • python
  • numpy
  • matplotlib

Please see Example Calculations.ipynb for example calculations related to the manuscript.

License

Copyright (C) 2020, Daniel Larremore

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program (see COPYING.txt). If not, see https://www.gnu.org/licenses/.