diff --git a/README.md b/README.md index 326ae20..5ddf604 100644 --- a/README.md +++ b/README.md @@ -20,8 +20,6 @@ Assume that you have a BAM file from aligner such as ```bwa mem``` named ```ATAC ```java -jar HMMRATAC_V1.2.4_exe.jar -b ATACseq.sorted.bam -i ATACseq.sorted.bam.bai -g genome.info``` -**NOTE: Earlier versions of HMMRATAC require a bigwig file. See HMMRATAC_Guide.txt for more detail** - Samtools can be downloaded here: http://www.htslib.org/download/ Be sure to run HMMRATAC using the executable file, found here: