From 9a5153959f1fc51fe45ae72f213451855791ff8f Mon Sep 17 00:00:00 2001 From: LucaCerina Date: Thu, 23 Jun 2022 17:13:24 +0200 Subject: [PATCH] Added unittest --- ampdlib/ampdlib.py | 2 +- ampdlib/tests/test.py | 80 ++++++++++++++++++++++++++++++------------- 2 files changed, 58 insertions(+), 24 deletions(-) diff --git a/ampdlib/ampdlib.py b/ampdlib/ampdlib.py index 544042b..d16eb40 100644 --- a/ampdlib/ampdlib.py +++ b/ampdlib/ampdlib.py @@ -144,7 +144,7 @@ def ampd_fast(sig_input:np.ndarray, window_length:int, hop_length:int=None, lsm_ # Define iterations if window_length < sig_input.shape[0]: - iterations = (sig_input.shape[0] - window_length) / hop_length + 1 + iterations = int((sig_input.shape[0] - window_length) // hop_length) + 1 if hop_length is None: hop_length = window_length else: diff --git a/ampdlib/tests/test.py b/ampdlib/tests/test.py index 0558418..e297d73 100644 --- a/ampdlib/tests/test.py +++ b/ampdlib/tests/test.py @@ -3,30 +3,64 @@ __copyright__ = "Copyright 2022, Luca Cerina" __email__ = "lccerina@gmail.com" -import sys -from time import perf_counter +# import sys +# from time import perf_counter +# import numpy as np +# from scipy.io import loadmat +# sys.path.append('../') +# import ampdLib + +# if __name__ == "__main__": +# print("Loading data") +# real_data = loadmat('data.mat') + +# print("Find peaks") +# N = 30000 +# input_data = real_data['ecg_signal'][0:N,0].flatten() +# tStart = perf_counter() +# ampd_peaks = ampdLib.ampd_fast(input_data) +# tEnd = perf_counter() +# print("Samples: {}".format(N)) +# print("Peaks found in: {} seconds".format(tEnd-tStart)) + +# print("Test results") +# # Find misplaced peaks +# error_peaks = np.sum((ampd_peaks - real_data['real_peaks'][0][0:ampd_peaks.shape[0]]) != 0) +# if(error_peaks == 0): +# print("Test passed") +# else: +# print("Total error {}".format(error_peaks)) + +import unittest + +import ampdlib import numpy as np from scipy.io import loadmat -sys.path.append('../') -import ampdLib + + +class TestLibrary(unittest.TestCase): + def setUp(self) -> None: + print("Loading data") + self.test_data = loadmat('data.mat') + N = 30000 + self.input_data = self.test_data['ecg_signal'][0:N,0].flatten() + self.real_peaks = self.test_data['real_peaks'][0] + return super().setUp() + + def test_detection(self): + ampd_peaks = ampdlib.ampd_fast(self.input_data, window_length=2000, hop_length=1000) + error_peaks = np.sum((ampd_peaks - self.real_peaks[0:ampd_peaks.shape[0]]) != 0) + self.assertEqual(error_peaks, 0) + + def test_assertions(self): + with self.assertRaises(AssertionError): + ampdlib.ampd(self.input_data, lsm_limit=-1) + with self.assertRaises(AssertionError): + ampdlib.ampd(self.input_data, lsm_limit=2) + with self.assertRaises(AssertionError): + ampdlib.ampd_fast(self.input_data, 2000, -1) + with self.assertRaises(AssertionError): + ampdlib.ampd_fast(self.input_data, 2000, 2100) if __name__ == "__main__": - print("Loading data") - real_data = loadmat('data.mat') - - print("Find peaks") - N = 30000 - input_data = real_data['ecg_signal'][0:N,0].flatten() - tStart = perf_counter() - ampd_peaks = ampdLib.ampd_fast(input_data) - tEnd = perf_counter() - print("Samples: {}".format(N)) - print("Peaks found in: {} seconds".format(tEnd-tStart)) - - print("Test results") - # Find misplaced peaks - error_peaks = np.sum((ampd_peaks - real_data['real_peaks'][0][0:ampd_peaks.shape[0]]) != 0) - if(error_peaks == 0): - print("Test passed") - else: - print("Total error {}".format(error_peaks)) + unittest.main() \ No newline at end of file