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Can CAT assign taxonomy to full length 16S gene? #139

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JSSaini opened this issue Feb 20, 2025 · 0 comments
Open

Can CAT assign taxonomy to full length 16S gene? #139

JSSaini opened this issue Feb 20, 2025 · 0 comments

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@JSSaini
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JSSaini commented Feb 20, 2025

Hello, suppose I have a database of 16S full length genes. Would it be possible to assign taxonomy to the predicted protein sequences of these genes using CAT? Better to use nr or GTDB database of this purpose?

Kindly suggest.

Thank you. Jaspreet
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