Location of nnUNet_train.py

[paul-reiners]

The following instructions are given in "Example: 3D U-Net training on the Hippocampus dataset":

Now you can already start network training. This is how you train a 3d full resoltion U-Net on the Hippocampus dataset:

nnUNet_train 3d_fullres nnUNetTrainerV2 4 0

However, I don't see a file named nnUNet_train.py.

Am I missing something here?

[FabianIsensee]

Have a look at the setup.py. In there you will see what file and function is called with each of the nnU-Net commands

[paul-reiners]

I'm using

nnUNet/nnunet/run/run_training.py

I hope that's the right file. Looking at setup.py did not help me find a file named nnUNet_train.py.

[FabianIsensee]

nnUNet/setup.py

Line 30 in 0201e59

'nnUNet_train = nnunet.run.run_training:main',

how about this? :-D It points directly at the file you mentioned