diff --git a/latest/_modules/compass/landice/mesh.html b/latest/_modules/compass/landice/mesh.html index f3348d4745..49fdf779dd 100644 --- a/latest/_modules/compass/landice/mesh.html +++ b/latest/_modules/compass/landice/mesh.html @@ -112,6 +112,7 @@

Source code for compass.landice.mesh

 import os
+import re
 import sys
 import time
 from shutil import copyfile
@@ -125,6 +126,7 @@ 
Source code for compass.landice.mesh
 from mpas_tools.logging import check_call
 from mpas_tools.mesh.conversion import convert, cull
 from mpas_tools.mesh.creation import build_planar_mesh
+from mpas_tools.mesh.creation.sort_mesh import sort_mesh
 from netCDF4 import Dataset
 from scipy.interpolate import NearestNDInterpolator, interpn
 
@@ -569,7 +571,7 @@ 
Source code for compass.landice.mesh
         logger.info('WARNING: window_size was set to a value smaller'
                     ' than high_dist and/or high_dist_bed. Resetting'
                     f' window_size to {max(high_dist, high_dist_bed)},'
-                    ' which is  max(high_dist, high_dist_bed)')
+                    ' which is max(high_dist, high_dist_bed)')
         window_size = max(high_dist, high_dist_bed)
 
     dx = x[1] - x[0]  # assumed constant and equal in x and y
@@ -877,10 +879,11 @@ 
Source code for compass.landice.mesh
 
     check_call(args, logger=logger)
 
-    logger.info('culling and converting')
+    logger.info('culling, converting, and sorting')
     dsMesh = xarray.open_dataset('culled.nc')
     dsMesh = cull(dsMesh, logger=logger)
     dsMesh = convert(dsMesh, logger=logger)
+    dsMesh = sort_mesh(dsMesh)
     write_netcdf(dsMesh, 'dehorned.nc')
 
     args = ['create_landice_grid_from_generic_MPAS_grid.py', '-i',
@@ -1110,6 +1113,8 @@ 
Source code for compass.landice.mesh
 
         tic = time.perf_counter()
         logger.info(f"Beginning interpolation for {field}")
+        # NOTE: Do not need to evaluate the extrapolator at all grid cells.
+        #       Only needed for ice-free grid cells, since is NN extrapolation
         data.variables[field][0, :] = interp(xGrid, yGrid)
         toc = time.perf_counter()
         logger.info(f"Interpolation completed in {toc - tic} seconds")
@@ -1145,17 +1150,17 @@ 
Source code for compass.landice.mesh
 
 
 
-

-[docs]
-def interp_ais_bedmachine(self, data_path, mali_scrip, nProcs, dest_file):
+

+[docs]
+def interp_gridded2mali(self, source_file, mali_scrip, nProcs, dest_file, proj,
+                        variables="all"):
     """
-    Interpolates BedMachine thickness and bedTopography dataset
-    to a MALI mesh
+    Interpolate gridded dataset (e.g. MEASURES, BedMachine) onto a MALI mesh
 
     Parameters
     ----------
-    data_path : str
-        path to AIS datasets, including BedMachine
+    source_file : str
+        filepath to the source gridded datatset to be interpolated
 
     mali_scrip : str
         name of scrip file corresponding to destination MALI mesh
@@ -1165,107 +1170,69 @@ 
Source code for compass.landice.mesh
 
     dest_file: str
         MALI input file to which data should be remapped
-    """
-
-    logger = self.logger
-
-    logger.info('creating scrip file for BedMachine dataset')
-    # Note: writing scrip file to workdir
-    args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
-            '-i',
-            os.path.join(data_path,
-                         'BedMachineAntarctica_2020-07-15_v02_edits_floodFill_extrap_fillVostok.nc'),  # noqa
-            '-s',
-            'BedMachineAntarctica_2020-07-15_v02.scrip.nc',
-            '-p', 'ais-bedmap2',
-            '-r', '2']
-    check_call(args, logger=logger)
 
-    # Generate remapping weights
-    # Testing shows 5 badger/grizzly nodes works well.
-    # 2 nodes is too few. I have not tested anything in between.
-    logger.info('generating gridded dataset -> MPAS weights')
-    args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen',
-            '--source',
-            'BedMachineAntarctica_2020-07-15_v02.scrip.nc',
-            '--destination', mali_scrip,
-            '--weight', 'BedMachine_to_MPAS_weights.nc',
-            '--method', 'conserve',
-            "--netcdf4",
-            "--dst_regional", "--src_regional", '--ignore_unmapped']
-    check_call(args, logger=logger)
-
-    # Perform actual interpolation using the weights
-    logger.info('calling interpolate_to_mpasli_grid.py')
-    args = ['interpolate_to_mpasli_grid.py', '-s',
-            os.path.join(data_path,
-                         'BedMachineAntarctica_2020-07-15_v02_edits_floodFill_extrap_fillVostok.nc'),  # noqa
-            '-d', dest_file,
-            '-m', 'e',
-            '-w', 'BedMachine_to_MPAS_weights.nc']
-    check_call(args, logger=logger)

+    proj: str
+        projection of the source dataset
 
+    variables: "all" or list of strings
+        either the string "all" or a list of strings
+    """
 
+    def __guess_scrip_name(filename):
 
-

-[docs]
-def interp_ais_measures(self, data_path, mali_scrip, nProcs, dest_file):
-    """
-    Interpolates MEASURES ice velocity dataset
-    to a MALI mesh
+        # try searching for string followed by a version number
+        match = re.search(r'(^.*[_-]v\d*[_-])+', filename)
 
-    Parameters
-    ----------
-    data_path : str
-        path to AIS datasets, including BedMachine
+        if match:
+            # slice string to end of match minus one to leave of final _ or -
+            base_fn = filename[:match.end() - 1]
+        else:
+            # no matches were found, just use the filename (minus extension)
+            base_fn = os.path.splitext(filename)[0]
 
-    mali_scrip : str
-        name of scrip file corresponding to destination MALI mesh
+        return f"{base_fn}.scrip.nc"
 
-    nProcs : int
-        number of processors to use for generating remapping weights
+    logger = self.logger
 
-    dest_file: str
-        MALI input file to which data should be remapped
-    """
+    source_scrip = __guess_scrip_name(os.path.basename(source_file))
+    weights_filename = "gridded_to_MPAS_weights.nc"
 
-    logger = self.logger
+    # make sure variables is a list, encompasses the variables="all" case
+    if isinstance(variables, str):
+        variables = [variables]
+    if not isinstance(variables, list):
+        raise TypeError("Arugment 'variables' is of incorrect type, must"
+                        " either the string 'all' or a list of strings")
 
-    logger.info('creating scrip file for velocity dataset')
+    logger.info('creating scrip file for source dataset')
     # Note: writing scrip file to workdir
     args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
-            '-i',
-            os.path.join(data_path,
-                         'antarctica_ice_velocity_450m_v2_edits_extrap.nc'),
-            '-s',
-            'antarctica_ice_velocity_450m_v2.scrip.nc',
-            '-p', 'ais-bedmap2',
+            '-i', source_file,
+            '-s', source_scrip,
+            '-p', proj,
             '-r', '2']
     check_call(args, logger=logger)
 
     # Generate remapping weights
     logger.info('generating gridded dataset -> MPAS weights')
     args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen',
-            '--source',
-            'antarctica_ice_velocity_450m_v2.scrip.nc',
+            '--source', source_scrip,
             '--destination', mali_scrip,
-            '--weight', 'measures_to_MPAS_weights.nc',
+            '--weight', weights_filename,
             '--method', 'conserve',
             "--netcdf4",
             "--dst_regional", "--src_regional", '--ignore_unmapped']
     check_call(args, logger=logger)
 
+    # Perform actual interpolation using the weights
     logger.info('calling interpolate_to_mpasli_grid.py')
     args = ['interpolate_to_mpasli_grid.py',
-            '-s',
-            os.path.join(data_path,
-                         'antarctica_ice_velocity_450m_v2_edits_extrap.nc'),
+            '-s', source_file,
             '-d', dest_file,
             '-m', 'e',
-            '-w', 'measures_to_MPAS_weights.nc',
-            '-v', 'observedSurfaceVelocityX',
-                  'observedSurfaceVelocityY',
-                  'observedSurfaceVelocityUncertainty']
+            '-w', weights_filename,
+            '-v'] + variables
+
     check_call(args, logger=logger)

 
 
diff --git a/latest/_modules/compass/landice/tests/antarctica/mesh.html b/latest/_modules/compass/landice/tests/antarctica/mesh.html
index 678c31bbfb..5bc5a41076 100644
--- a/latest/_modules/compass/landice/tests/antarctica/mesh.html
+++ b/latest/_modules/compass/landice/tests/antarctica/mesh.html
@@ -123,8 +123,7 @@ 
Source code for compass.landice.tests.antarctica.mesh
build_cell_width,
     build_mali_mesh,
     clean_up_after_interp,
-    interp_ais_bedmachine,
-    interp_ais_measures,
+    interp_gridded2mali,
     make_region_masks,
     preprocess_ais_data,
 )
@@ -162,10 +161,10 @@ 
Source code for compass.landice.tests.antarctica.mesh
self.mesh_filename = 'Antarctica.nc'
         self.add_output_file(filename='graph.info')
         self.add_output_file(filename=self.mesh_filename)
-        self.add_output_file(filename=f'{self.mesh_filename[:-3]}_'
-                                      f'imbie_regionMasks.nc')
-        self.add_output_file(filename=f'{self.mesh_filename[:-3]}_'
-                                      f'ismip6_regionMasks.nc')
+        self.add_output_file(
+            filename=f'{self.mesh_filename[:-3]}_imbie_regionMasks.nc')
+        self.add_output_file(
+            filename=f'{self.mesh_filename[:-3]}_ismip6_regionMasks.nc')
         self.add_input_file(
             filename='antarctica_8km_2024_01_29.nc',
             target='antarctica_8km_2024_01_29.nc',
@@ -182,37 +181,38 @@ 
Source code for compass.landice.tests.antarctica.mesh
        """
         logger = self.logger
         config = self.config
+
         section_ais = config['antarctica']
-        data_path = section_ais.get('data_path')
+
         nProcs = section_ais.get('nProcs')
+        src_proj = section_ais.get("src_proj")
+        data_path = section_ais.get('data_path')
+        measures_filename = section_ais.get("measures_filename")
+        bedmachine_filename = section_ais.get("bedmachine_filename")
+
+        measures_dataset = os.path.join(data_path, measures_filename)
+        bedmachine_dataset = os.path.join(data_path, bedmachine_filename)
 
         section_name = 'mesh'
 
+        # TODO: do we want to add this to the config file?
         source_gridded_dataset = 'antarctica_8km_2024_01_29.nc'
-        bedmachine_path = os.path.join(
-            data_path,
-            'BedMachineAntarctica_2020-07-15_v02_edits_floodFill_extrap_fillVostok.nc')  # noqa
 
         bm_updated_gridded_dataset = add_bedmachine_thk_to_ais_gridded_data(
-            self, source_gridded_dataset, bedmachine_path)
+            self, source_gridded_dataset, bedmachine_dataset)
+
         logger.info('calling build_cell_width')
         cell_width, x1, y1, geom_points, geom_edges, floodFillMask = \
             build_cell_width(
                 self, section_name=section_name,
                 gridded_dataset=bm_updated_gridded_dataset)
 
-        # Preprocess the gridded AIS source datasets to work
-        # with the rest of the workflow
-        logger.info('calling preprocess_ais_data')
-        preprocessed_gridded_dataset = preprocess_ais_data(
-            self, bm_updated_gridded_dataset, floodFillMask)
-
         # Now build the base mesh and perform the standard interpolation
         build_mali_mesh(
             self, cell_width, x1, y1, geom_points, geom_edges,
             mesh_name=self.mesh_filename, section_name=section_name,
             gridded_dataset=bm_updated_gridded_dataset,
-            projection='ais-bedmap2', geojson_file=None)
+            projection=src_proj, geojson_file=None)
 
         # Now that we have base mesh with standard interpolation
         # perform advanced interpolation for specific fields
@@ -228,12 +228,19 @@ 
Source code for compass.landice.tests.antarctica.mesh
data.variables['iceMask'][:] = 0.
         data.close()
 
-        # interpolate fields from composite dataset
-        # Note: this was already done in build_mali_mesh() using
-        # bilinear interpolation.  Redoing it here again is likely
-        # not needed.  Also, it should be assessed if bilinear or
-        # barycentric used here is preferred for this application.
-        # Current thinking is they are both equally appropriate.
+        # Preprocess the gridded AIS source datasets to work
+        # with the rest of the workflow
+        logger.info('calling preprocess_ais_data')
+        preprocessed_gridded_dataset = preprocess_ais_data(
+            self, bm_updated_gridded_dataset, floodFillMask)
+
+        # interpolate fields from *preprocessed* composite dataset
+        # NOTE: while this has already been done in `build_mali_mesh()`
+        #       we are using an updated version of the gridded dataset here,
+        #       which has had unit conversion and extrapolation done.
+        #       Also, it should be assessed if bilinear or
+        #       barycentric used here is preferred for this application.
+        #       Current thinking is they are both equally appropriate.
         logger.info('calling interpolate_to_mpasli_grid.py')
         args = ['interpolate_to_mpasli_grid.py', '-s',
                 preprocessed_gridded_dataset,
@@ -252,10 +259,16 @@ 
Source code for compass.landice.tests.antarctica.mesh
# Now perform bespoke interpolation of geometry and velocity data
         # from their respective sources
-        interp_ais_bedmachine(self, data_path, dst_scrip_file, nProcs,
-                              self.mesh_filename)
-        interp_ais_measures(self, data_path, dst_scrip_file, nProcs,
-                            self.mesh_filename)
+        interp_gridded2mali(self, bedmachine_dataset, dst_scrip_file, nProcs,
+                            self.mesh_filename, src_proj, variables="all")
+
+        # only interpolate a subset of MEaSUREs variables onto the MALI mesh
+        measures_vars = ['observedSurfaceVelocityX',
+                         'observedSurfaceVelocityY',
+                         'observedSurfaceVelocityUncertainty']
+        interp_gridded2mali(self, measures_dataset, dst_scrip_file, nProcs,
+                            self.mesh_filename, src_proj,
+                            variables=measures_vars)
 
         # perform some final cleanup details
         clean_up_after_interp(self.mesh_filename)
diff --git a/latest/_modules/compass/landice/tests/greenland/mesh.html b/latest/_modules/compass/landice/tests/greenland/mesh.html
index 57370912ee..49e7de547c 100644
--- a/latest/_modules/compass/landice/tests/greenland/mesh.html
+++ b/latest/_modules/compass/landice/tests/greenland/mesh.html
@@ -112,17 +112,17 @@
            

              
   
Source code for compass.landice.tests.greenland.mesh
-from os.path import exists
-from shutil import copyfile
+import os
 
-import netCDF4
 import numpy as np
-from mpas_tools.logging import check_call
+import xarray as xr
 from mpas_tools.scrip.from_mpas import scrip_from_mpas
 
 from compass.landice.mesh import (
     build_cell_width,
     build_mali_mesh,
+    clean_up_after_interp,
+    interp_gridded2mali,
     make_region_masks,
 )
 from compass.model import make_graph_file
@@ -137,8 +137,8 @@ 
Source code for compass.landice.tests.greenland.mesh
    Attributes
     ----------
-    mesh_type : str
-        The resolution or mesh type of the test case
+    mesh_filename : str
+        File name of the MALI mesh
     """
 

 [docs]
@@ -151,14 +151,19 @@ 
Source code for compass.landice.tests.greenland.mesh
        test_case : compass.TestCase
             The test case this step belongs to
 
-        mesh_type : str
-            The resolution or mesh type of the test case
         """
         super().__init__(test_case=test_case, name='mesh', cpus_per_task=128,
                          min_cpus_per_task=1)
 
+        # output files
+        self.mesh_filename = 'GIS.nc'
         self.add_output_file(filename='graph.info')
-        self.add_output_file(filename='GIS.nc')
+        self.add_output_file(filename=self.mesh_filename)
+        self.add_output_file(
+            filename=f'{self.mesh_filename[:-3]}_ismip6_regionMasks.nc')
+        self.add_output_file(
+            filename=f'{self.mesh_filename[:-3]}_zwally_regionMasks.nc')
+        # input files
         self.add_input_file(
             filename='greenland_1km_2024_01_29.epsg3413.icesheetonly.nc',
             target='greenland_1km_2024_01_29.epsg3413.icesheetonly.nc',
@@ -177,142 +182,73 @@ 
Source code for compass.landice.tests.greenland.mesh
        Run this step of the test case
         """
         logger = self.logger
-        mesh_name = 'GIS.nc'
-        section_name = 'mesh'
         config = self.config
-        section = config[section_name]
-        data_path = section.get('data_path')
-        nProcs = section.get('nProcs')
+
+        section_gis = config['greenland']
+
+        nProcs = section_gis.get('nProcs')
+        src_proj = section_gis.get("src_proj")
+        data_path = section_gis.get('data_path')
+        measures_filename = section_gis.get("measures_filename")
+        bedmachine_filename = section_gis.get("bedmachine_filename")
+
+        measures_dataset = os.path.join(data_path, measures_filename)
+        bedmachine_dataset = os.path.join(data_path, bedmachine_filename)
+
+        section_name = 'mesh'
+
+        source_gridded_dataset_1km = 'greenland_1km_2024_01_29.epsg3413.icesheetonly.nc'  # noqa: E501
+        source_gridded_dataset_2km = 'greenland_2km_2024_01_29.epsg3413.nc'
 
         logger.info('calling build_cell_width')
         cell_width, x1, y1, geom_points, geom_edges, floodMask = \
             build_cell_width(
                 self, section_name=section_name,
-                gridded_dataset='greenland_2km_2024_01_29.epsg3413.nc',
+                gridded_dataset=source_gridded_dataset_2km,
                 flood_fill_start=[100, 700])
 
+        # Now build the base mesh and perform the standard interpolation
         build_mali_mesh(
             self, cell_width, x1, y1, geom_points, geom_edges,
-            mesh_name=mesh_name, section_name=section_name,
-            gridded_dataset='greenland_1km_2024_01_29.epsg3413.icesheetonly.nc',  # noqa
-            projection='gis-gimp', geojson_file=None)
-
-        # Create scrip files if they don't already exist
-        if exists(data_path + '/BedMachineGreenland-v5.scrip.nc'):
-            logger.info('BedMachine script file exists;'
-                        ' skipping file creation')
-        else:
-            logger.info('creating scrip file for BedMachine dataset')
-            args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
-                    '-i', data_path + '/BedMachineGreenland-v5_edits_floodFill_extrap.nc',  # noqa
-                    '-s', data_path + '/BedMachineGreenland-v5.scrip.nc',
-                    '-p', 'gis-gimp', '-r', '2']
-            check_call(args, logger=logger)
-        if exists(data_path + '/greenland_vel_mosaic500.scrip.nc'):
-            logger.info('Measures script file exists; skipping file creation')
-        else:
-            logger.info('creating scrip file for 2006-2010 velocity dataset')
-            args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
-                    '-i', data_path + '/greenland_vel_mosaic500_extrap.nc',
-                    '-s', data_path + '/greenland_vel_mosaic500.scrip.nc',
-                    '-p', 'gis-gimp', '-r', '2']
-            check_call(args, logger=logger)
-
-        logger.info('calling set_lat_lon_fields_in_planar_grid.py')
-        args = ['set_lat_lon_fields_in_planar_grid.py', '-f',
-                'GIS.nc', '-p', 'gis-gimp']
-        check_call(args, logger=logger)
+            mesh_name=self.mesh_filename, section_name=section_name,
+            gridded_dataset=source_gridded_dataset_1km,
+            projection=src_proj, geojson_file=None)
 
+        # Create scrip file for the newly generated mesh
         logger.info('creating scrip file for destination mesh')
-        scrip_from_mpas('GIS.nc', 'GIS.scrip.nc')
-        args = ['create_SCRIP_file_from_MPAS_mesh.py',
-                '-m', 'GIS.nc',
-                '-s', 'GIS.scrip.nc']
-        check_call(args, logger=logger)
-
-        # Create weight files from datasets to mesh
-        if exists('BedMachine_to_MPAS_weights.nc'):
-            logger.info('BedMachine_to_MPAS_weights.nc exists; skipping')
-        else:
-            logger.info('generating gridded dataset -> MPAS weights')
-            args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen', '--source',
-                    data_path + 'BedMachineGreenland-v5.scrip.nc',
-                    '--destination',
-                    'GIS.scrip.nc',
-                    '--weight', 'BedMachine_to_MPAS_weights.nc',
-                    '--method', 'conserve',
-                    "-i", "-64bit_offset",
-                    "--dst_regional", "--src_regional", '--netcdf4']
-            check_call(args, logger=logger)
-
-        if exists('measures_to_MPAS_weights.nc'):
-            logger.info('measures_to_MPAS_weights.nc exists; skipping')
-        else:
-            logger.info('generating gridded dataset -> MPAS weights')
-            args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen', '--source',
-                    data_path + 'greenland_vel_mosaic500.scrip.nc',
-                    '--destination',
-                    'GIS.scrip.nc',
-                    '--weight', 'measures_to_MPAS_weights.nc',
-                    '--method', 'conserve',
-                    "-i", "-64bit_offset", '--netcdf4',
-                    "--dst_regional", "--src_regional", '--ignore_unmapped']
-            check_call(args, logger=logger)
-
-        # interpolate fields from BedMachine and Measures
-        # Using conservative remapping
-        logger.info('calling interpolate_to_mpasli_grid.py')
-        args = ['interpolate_to_mpasli_grid.py', '-s',
-                data_path + '/BedMachineGreenland-v5_edits_floodFill_extrap.nc',  # noqa
-                '-d', 'GIS.nc', '-m', 'e',
-                '-w', 'BedMachine_to_MPAS_weights.nc']
-        check_call(args, logger=logger)
-
-        logger.info('calling interpolate_to_mpasli_grid.py')
-        args = ['interpolate_to_mpasli_grid.py', '-s',
-                data_path + '/greenland_vel_mosaic500_extrap.nc',
-                '-d', 'GIS.nc', '-m', 'e',
-                '-w', 'measures_to_MPAS_weights.nc',
-                '-v', 'observedSurfaceVelocityX',
-                'observedSurfaceVelocityY',
-                'observedSurfaceVelocityUncertainty']
-        check_call(args, logger=logger)
-
-        logger.info('Marking domain boundaries dirichlet')
-        args = ['mark_domain_boundaries_dirichlet.py',
-                '-f', 'GIS.nc']
-        check_call(args, logger=logger)
-
+        dst_scrip_file = f"{self.mesh_filename.split('.')[:-1][0]}_scrip.nc"
+        scrip_from_mpas(self.mesh_filename, dst_scrip_file)
+
+        # Now perform bespoke interpolation of geometry and velocity data
+        # from their respective sources
+        interp_gridded2mali(self, bedmachine_dataset, dst_scrip_file, nProcs,
+                            self.mesh_filename, src_proj, variables="all")
+
+        # only interpolate a subset of MEaSUREs variables onto the MALI mesh
+        measures_vars = ['observedSurfaceVelocityX',
+                         'observedSurfaceVelocityY',
+                         'observedSurfaceVelocityUncertainty']
+        interp_gridded2mali(self, measures_dataset, dst_scrip_file, nProcs,
+                            self.mesh_filename, src_proj,
+                            variables=measures_vars)
+
+        # perform some final cleanup details
+        clean_up_after_interp(self.mesh_filename)
+
+        # create graph file
         logger.info('creating graph.info')
-        make_graph_file(mesh_filename=mesh_name,
+        make_graph_file(mesh_filename=self.mesh_filename,
                         graph_filename='graph.info')
-        # Create a backup in case clean-up goes awry
-        copyfile('GIS.nc', 'GIS_backup.nc')
-
-        # Clean up: trim to iceMask and set large velocity
-        # uncertainties where appropriate.
-        data = netCDF4.Dataset('GIS.nc', 'r+')
-        data.set_auto_mask(False)
-        data.variables['thickness'][:] *= (data.variables['iceMask'][:] > 1.5)
-
-        mask = np.logical_or(
-            np.isnan(
-                data.variables['observedSurfaceVelocityUncertainty'][:]),
-            data.variables['thickness'][:] < 1.0)
-        mask = np.logical_or(
-            mask,
-            data.variables['observedSurfaceVelocityUncertainty'][:] == 0.0)
-        data.variables['observedSurfaceVelocityUncertainty'][0, mask[0, :]] = 1.0  # noqa
 
         # create region masks
-        mask_filename = f'{mesh_name[:-3]}_ismip6_regionMasks.nc'
-        make_region_masks(self, mesh_name, mask_filename,
+        mask_filename = f'{self.mesh_filename[:-3]}_ismip6_regionMasks.nc'
+        make_region_masks(self, self.mesh_filename, mask_filename,
                           self.cpus_per_task,
                           tags=["Greenland", "ISMIP6", "Shelf"],
                           component='ocean')
 
-        mask_filename = f'{mesh_name[:-3]}_zwally_regionMasks.nc'
-        make_region_masks(self, mesh_name, mask_filename,
+        mask_filename = f'{self.mesh_filename[:-3]}_zwally_regionMasks.nc'
+        make_region_masks(self, self.mesh_filename, mask_filename,
                           self.cpus_per_task,
                           tags=['eastCentralGreenland',
                                 'northEastGreenland',
@@ -324,21 +260,25 @@ 
Source code for compass.landice.tests.greenland.mesh
'westCentralGreenland'],
                           all_tags=False)
 
+        # Do some final validation of the mesh
+        ds = xr.open_dataset(self.mesh_filename)
         # Ensure basalHeatFlux is positive
-        data.variables['basalHeatFlux'][:] = np.abs(
-            data.variables['basalHeatFlux'][:])
+        ds["basalHeatFlux"] = np.abs(ds.basalHeatFlux)
         # Ensure reasonable dHdt values
-        dHdt = data.variables["observedThicknessTendency"][:]
-        dHdtErr = data.variables["observedThicknessTendencyUncertainty"][:]
+        dHdt = ds["observedThicknessTendency"]
         # Arbitrary 5% uncertainty; improve this later
         dHdtErr = np.abs(dHdt) * 0.05
-        # large uncertainty where data is missing
-        dHdtErr[np.abs(dHdt) > 1.0] = 1.0
-        dHdt[np.abs(dHdt) > 1.0] = 0.0  # Remove ridiculous values
-        data.variables["observedThicknessTendency"][:] = dHdt
-        data.variables["observedThicknessTendencyUncertainty"][:] = dHdtErr
-
-        data.close()

+        # Use threshold of |dHdt| > 1.0 to determine invalid data
+        mask = np.abs(dHdt) > 1.0
+        # Assign very large uncertainty where data is missing
+        dHdtErr = dHdtErr.where(~mask, 1.0)
+        # Remove ridiculous values
+        dHdt = dHdt.where(~mask, 0.0)
+        # Put the updated fields back in the dataset
+        ds["observedThicknessTendency"] = dHdt
+        ds["observedThicknessTendencyUncertainty"] = dHdtErr
+        # Write the data to disk
+        ds.to_netcdf(self.mesh_filename, 'a')

 

 
 

diff --git a/latest/_sources/developers_guide/landice/api.rst.txt b/latest/_sources/developers_guide/landice/api.rst.txt
index 456dce84ae..ae9736f688 100644
--- a/latest/_sources/developers_guide/landice/api.rst.txt
+++ b/latest/_sources/developers_guide/landice/api.rst.txt
@@ -492,8 +492,7 @@ Landice Framework
    mesh.add_bedmachine_thk_to_ais_gridded_data
    mesh.clean_up_after_interp
    mesh.gridded_flood_fill
-   mesh.interp_ais_bedmachine
-   mesh.interp_ais_measures
+   mesh.interp_gridded2mali
    mesh.mpas_flood_fill
    mesh.preprocess_ais_data
    mesh.set_rectangular_geom_points_and_edges
diff --git a/latest/_sources/developers_guide/landice/framework.rst.txt b/latest/_sources/developers_guide/landice/framework.rst.txt
index 02123c5b22..e3fddd6e17 100644
--- a/latest/_sources/developers_guide/landice/framework.rst.txt
+++ b/latest/_sources/developers_guide/landice/framework.rst.txt
@@ -56,13 +56,10 @@ clean up steps after interpolation for the AIS mesh case.
 :py:func:`compass.landice.mesh.gridded_flood_fill()` applies a flood-fill algorithm
 to the gridded dataset in order to separate the ice sheet from peripheral ice.
 
-:py:func:`compass.landice.mesh.interp_ais_bedmachine()` interpolates BedMachine
-thickness and bedTopography dataset to a MALI mesh, accounting for masking of
-the ice extent to avoid interpolation ramps.
-
-:py:func:`compass.landice.mesh.interp_ais_interp_ais_measures()` interpolates
-MEASURES ice velocity dataset to a MALI mesh, accounting for masking at the ice
-edge and extrapolation.
+:py:func:`compass.landice.mesh.interp_gridded2mali()` interpolates gridded data
+(e.g. BedMachine thickness or MEaSUREs ice velocity) to a MALI mesh, accounting
+for masking of the ice extent to avoid interpolation ramps. This functions works
+for both Antarctica and Greenland. 
 
 :py:func:`compass.landice.mesh.preprocess_ais_data()` performs adjustments to
 gridded AIS datasets needed for rest of compass workflow to utilize them.
diff --git a/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.rst.txt b/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.rst.txt
deleted file mode 100644
index 4ae5cf634e..0000000000
--- a/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.rst.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-compass.landice.mesh.interp\_ais\_bedmachine
-============================================
-
-.. currentmodule:: compass.landice.mesh
-
-.. autofunction:: interp_ais_bedmachine
\ No newline at end of file
diff --git a/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.rst.txt b/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.rst.txt
deleted file mode 100644
index ef0e33e7a9..0000000000
--- a/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.rst.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-compass.landice.mesh.interp\_ais\_measures
-==========================================
-
-.. currentmodule:: compass.landice.mesh
-
-.. autofunction:: interp_ais_measures
\ No newline at end of file
diff --git a/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.rst.txt b/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.rst.txt
new file mode 100644
index 0000000000..5d97913f88
--- /dev/null
+++ b/latest/_sources/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.rst.txt
@@ -0,0 +1,6 @@
+compass.landice.mesh.interp\_gridded2mali
+=========================================
+
+.. currentmodule:: compass.landice.mesh
+
+.. autofunction:: interp_gridded2mali
\ No newline at end of file
diff --git a/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt b/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt
index f0a0629e80..cef797f9ee 100644
--- a/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt
+++ b/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt
@@ -73,7 +73,19 @@ the mesh generation options are adjusted through the config file.
     # path to directory containing BedMachine and Measures datasets
     # (default value is for Perlmutter)
     data_path = /global/cfs/cdirs/fanssie/standard_datasets/AIS_datasets
-
+    
+    # filename of the BedMachine thickness and bedTopography dataset
+    # (default value is for Perlmutter)
+    bedmachine_filename = BedMachineAntarctica_2020-07-15_v02_edits_floodFill_extrap_fillVostok.nc
+    
+    # filename of the MEASURES ice velocity dataset
+    # (default value is for Perlmutter)
+    measures_filename = antarctica_ice_velocity_450m_v2_edits_extrap.nc
+    
+    # projection of the source datasets, according to the dictionary keys
+    # create_SCRIP_file_from_planar_rectangular_grid.py from MPAS_Tools
+    src_proj = ais-bedmap2
+    
     # number of processors to use for ESMF_RegridWeightGen
     nProcs = 128
 
diff --git a/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt b/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt
index 902baa0161..146119b909 100644
--- a/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt
+++ b/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt
@@ -86,6 +86,26 @@ The other test cases do not use config options.
    use_dist_to_edge = True
    use_bed = True
 
+   [greenland]
+   # path to directory containing BedMachine and Measures datasets
+   # (default value is for Perlmutter)
+   data_path = /global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/
+   
+   # filename of the BedMachine thickness and bedTopography dataset
+   # (default value is for Perlmutter)
+   bedmachine_filename = BedMachineGreenland-v5_edits_floodFill_extrap.nc
+   
+   # filename of the MEASURES ice velocity dataset
+   # (default value is for Perlmutter)
+   measures_filename = greenland_vel_mosaic500_extrap.nc
+   
+   # projection of the source datasets, according to the dictionary keys
+   # create_SCRIP_file_from_planar_rectangular_grid.py from MPAS_Tools
+   src_proj = gis-gimp
+   
+   # number of processors to use for ESMF_RegridWeightGen
+   nProcs = 128
+
 smoke_test
 ----------
 
diff --git a/latest/developers_guide/landice/api.html b/latest/developers_guide/landice/api.html
index 5d197db212..3eee0e4097 100644
--- a/latest/developers_guide/landice/api.html
+++ b/latest/developers_guide/landice/api.html
@@ -941,34 +941,31 @@ 
Landice Framework
mesh.gridded_flood_fill(field[, iStart, jStart])

 
Generic flood-fill routine to create mask of connected elements in the desired input array (field) from a gridded dataset.

 
-
mesh.interp_ais_bedmachine(self, data_path, ...)

-
Interpolates BedMachine thickness and bedTopography dataset to a MALI mesh

+
mesh.interp_gridded2mali(self, source_file, ...)

+
Interpolate gridded dataset (e.g. MEASURES, BedMachine) onto a MALI mesh.

 
-
mesh.interp_ais_measures(self, data_path, ...)

-
Interpolates MEASURES ice velocity dataset to a MALI mesh

-
-
mesh.mpas_flood_fill(seed_mask, grow_mask, ...)

+
mesh.mpas_flood_fill(seed_mask, grow_mask, ...)

 
Flood-fill for mpas meshes using mpas cells.

 
-
mesh.preprocess_ais_data(self, ...)

+
mesh.preprocess_ais_data(self, ...)

 
Perform adjustments to gridded AIS datasets needed for rest of compass workflow to utilize them

 
-
mesh.set_rectangular_geom_points_and_edges(...)

+
mesh.set_rectangular_geom_points_and_edges(...)

 
Set node and edge coordinates to pass to mpas_tools.mesh.creation.build_mesh.build_planar_mesh().

 
-
mesh.set_cell_width(self, section_name, thk)

+
mesh.set_cell_width(self, section_name, thk)

 
Set cell widths based on settings in config file to pass to mpas_tools.mesh.creation.build_mesh.build_planar_mesh().

 
-
mesh.get_dist_to_edge_and_gl(self, thk, ...)

+
mesh.get_dist_to_edge_and_gl(self, thk, ...)

 
Calculate distance from each point to ice edge and grounding line, to be used in mesh density functions in compass.landice.mesh.set_cell_width().

 
-
mesh.build_cell_width(self, section_name, ...)

+
mesh.build_cell_width(self, section_name, ...)

 
Determine MPAS mesh cell size based on user-defined density function.

 
-
mesh.build_mali_mesh(self, cell_width, x1, ...)

+
mesh.build_mali_mesh(self, cell_width, x1, ...)

 
Create the MALI mesh based on final cell widths determined by compass.landice.mesh.build_cell_width(), using Jigsaw and MPAS-Tools functions.

 
-
mesh.make_region_masks(self, mesh_filename, ...)

+
mesh.make_region_masks(self, mesh_filename, ...)

 
Create masks for ice-sheet subregions based on data in MPAS-Dev/geometric_fatures.

 
 
diff --git a/latest/developers_guide/landice/framework.html b/latest/developers_guide/landice/framework.html
index 476feb2f67..f6e5a3e4f5 100644
--- a/latest/developers_guide/landice/framework.html
+++ b/latest/developers_guide/landice/framework.html
@@ -171,12 +171,10 @@ 
mesh
 
compass.landice.mesh.gridded_flood_fill() applies a flood-fill algorithm
 to the gridded dataset in order to separate the ice sheet from peripheral ice.

-
compass.landice.mesh.interp_ais_bedmachine() interpolates BedMachine
-thickness and bedTopography dataset to a MALI mesh, accounting for masking of
-the ice extent to avoid interpolation ramps.

-
compass.landice.mesh.interp_ais_interp_ais_measures() interpolates
-MEASURES ice velocity dataset to a MALI mesh, accounting for masking at the ice
-edge and extrapolation.

+
compass.landice.mesh.interp_gridded2mali() interpolates gridded data
+(e.g. BedMachine thickness or MEaSUREs ice velocity) to a MALI mesh, accounting
+for masking of the ice extent to avoid interpolation ramps. This functions works
+for both Antarctica and Greenland.

 
compass.landice.mesh.preprocess_ais_data() performs adjustments to
 gridded AIS datasets needed for rest of compass workflow to utilize them.

 
compass.landice.mesh.set_rectangular_geom_points_and_edges() sets node
diff --git a/latest/developers_guide/landice/generated/compass.landice.mesh.gridded_flood_fill.html b/latest/developers_guide/landice/generated/compass.landice.mesh.gridded_flood_fill.html
index f1330d679b..419f57b7c9 100644
--- a/latest/developers_guide/landice/generated/compass.landice.mesh.gridded_flood_fill.html
+++ b/latest/developers_guide/landice/generated/compass.landice.mesh.gridded_flood_fill.html
@@ -19,7 +19,7 @@
     
     
     
-    
+    
      
 
 
@@ -163,7 +163,7 @@ 
compass.landice.mesh.gridded_flood_fill
         
-        
+        
     

 
   

diff --git a/latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.html b/latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.html
deleted file mode 100644
index 68432ed03e..0000000000
--- a/latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_bedmachine.html
+++ /dev/null
@@ -1,182 +0,0 @@
-
-
-
-  
-
-  
-  compass.landice.mesh.interp_ais_bedmachine — compass latest documentation
-      
-      
-
-  
-  
-  
-        
-        
-        
-    
-    
-    
-    
-     
-
-
- 
-  

-    
-
-    

-
-      

-        

-          

-  
-  

-

-          

-           

-             
-  

-
compass.landice.mesh.interp_ais_bedmachine

-

-

-compass.landice.mesh.interp_ais_bedmachine(self, data_path, mali_scrip, nProcs, dest_file)[source]

-
Interpolates BedMachine thickness and bedTopography dataset
-to a MALI mesh

-

-
Parameters:

-
    
-
  • data_path (str) – path to AIS datasets, including BedMachine
    • 
-
  • mali_scrip (str) – name of scrip file corresponding to destination MALI mesh
    • 
-
  • nProcs (int) – number of processors to use for generating remapping weights
    • 
-
  • dest_file (str) – MALI input file to which data should be remapped
    • 
-

-

-

-

-
-

-
-
-           

-          

-          

-
-  

-
-  

-    
© Copyright Copyright (c) 2013-2021,  Los Alamos National Security, LLC (LANS) (Ocean: LA-CC-13-047;Land Ice: LA-CC-13-117) and the University Corporation for Atmospheric Research (UCAR)..

-  

-
-  Built with Sphinx using a
-    theme
-    provided by Read the Docs.
-   
-
-

-        

-      

-    

-  

-   
-
-
-
\ No newline at end of file
diff --git a/latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.html b/latest/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.html
similarity index 79%
rename from latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.html
rename to latest/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.html
index 7a6050fb9c..c0c1d5b202 100644
--- a/latest/developers_guide/landice/generated/compass.landice.mesh.interp_ais_measures.html
+++ b/latest/developers_guide/landice/generated/compass.landice.mesh.interp_gridded2mali.html
@@ -4,7 +4,7 @@
   
 
   
-  compass.landice.mesh.interp_ais_measures — compass latest documentation
+  compass.landice.mesh.interp_gridded2mali — compass latest documentation
       
       
 
@@ -20,7 +20,7 @@
     
     
     
-     
+     
 
 
  
@@ -117,9 +117,9 @@
       
    • 
           
  • API reference
    • 
           
  • landice
    • 
-      
  • compass.landice.mesh.interp_ais_measures
    • 
+      
  • compass.landice.mesh.interp_gridded2mali
    • 
       
  • 
-             View page source
+             View page source
       
    • 
   
   
    
@@ -127,20 +127,21 @@
           
    
            
    
              
-  
    
-
    compass.landice.mesh.interp_ais_measures
    
+  
    
+
    compass.landice.mesh.interp_gridded2mali
    
 
    
-
    
-compass.landice.mesh.interp_ais_measures(self, data_path, mali_scrip, nProcs, dest_file)[source]
    
-
    Interpolates MEASURES ice velocity dataset
-to a MALI mesh
    
+
    
+compass.landice.mesh.interp_gridded2mali(self, source_file, mali_scrip, nProcs, dest_file, proj, variables='all')[source]
    
+
    Interpolate gridded dataset (e.g. MEASURES, BedMachine) onto a MALI mesh
    
 
    
 
    Parameters:
    
 
      
-
    • data_path (str) – path to AIS datasets, including BedMachine
      • 
+
    • source_file (str) – filepath to the source gridded datatset to be interpolated
      • 
 
    • mali_scrip (str) – name of scrip file corresponding to destination MALI mesh
      • 
 
    • nProcs (int) – number of processors to use for generating remapping weights
      • 
 
    • dest_file (str) – MALI input file to which data should be remapped
      • 
+
    • proj (str) – projection of the source dataset
      • 
+
    • variables ("all" or list of strings) – either the string “all” or a list of strings
      • 
 
    
 
    
 
    
@@ -152,7 +153,7 @@ 
    compass.landice.mesh.interp_ais_measures
-        
+        
         
     
    
 
diff --git a/latest/developers_guide/landice/generated/compass.landice.mesh.mpas_flood_fill.html b/latest/developers_guide/landice/generated/compass.landice.mesh.mpas_flood_fill.html
index de521e493d..647ca0f9f9 100644
--- a/latest/developers_guide/landice/generated/compass.landice.mesh.mpas_flood_fill.html
+++ b/latest/developers_guide/landice/generated/compass.landice.mesh.mpas_flood_fill.html
@@ -20,7 +20,7 @@
     
     
     
-     
+     
 
 
  
@@ -160,7 +160,7 @@ 
    compass.landice.mesh.mpas_flood_fill
-        
+        
         
     
    
 
diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.greenland.mesh.Mesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.greenland.mesh.Mesh.html
index 36bd679393..3d05d0e3ad 100644
--- a/latest/developers_guide/landice/generated/compass.landice.tests.greenland.mesh.Mesh.html
+++ b/latest/developers_guide/landice/generated/compass.landice.tests.greenland.mesh.Mesh.html
@@ -135,7 +135,7 @@ 
    compass.landice.tests.greenland.mesh.Mesh
 
    Variables:
    
-
    mesh_type (str) – The resolution or mesh type of the test case
    
+
    mesh_filename (str) – File name of the MALI mesh
    
 
    
 
 
    
@@ -144,10 +144,7 @@ 
    compass.landice.tests.greenland.mesh.Mesh
 
    Parameters:
    
-
    
+
    test_case (compass.TestCase) – The test case this step belongs to
    
 
    
 
    
 
diff --git a/latest/genindex.html b/latest/genindex.html
index 3bf6dd0acc..089c5e6b55 100644
--- a/latest/genindex.html
+++ b/latest/genindex.html
@@ -1526,9 +1526,7 @@ 
    I
    
 
       
  • InternalWave (class in compass.ocean.tests.internal_wave)
 
    • 
-      
  • interp_ais_bedmachine() (in module compass.landice.mesh)
-
    • 
-      
  • interp_ais_measures() (in module compass.landice.mesh)
+      
  • interp_gridded2mali() (in module compass.landice.mesh)
 
    • 
       
  • interpolate_data_to_grid() (compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing method)
 
diff --git a/latest/objects.inv b/latest/objects.inv
index 264f7c4439..1750208201 100644
Binary files a/latest/objects.inv and b/latest/objects.inv differ
diff --git a/latest/searchindex.js b/latest/searchindex.js
index da962a524b..21f1391488 100644
--- a/latest/searchindex.js
+++ b/latest/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"100layerE3SMv1": [[990, "id1"]], "1D Grid type": [[990, "d-grid-type"]], "3D vertical coordinates": [[990, "d-vertical-coordinates"]], "3_year_test": [[923, "year-test"], [994, "year-test"]], "60layerPHC": [[990, "layerphc"]], "80layerE3SMv1": [[990, "layere3smv1"]], "A": [[320, "a"], [968, "a"]], "A \u201cuser\u201d config file": [[957, "a-user-config-file"]], "API reference": [[4, null]], "Activating the environment": [[949, "activating-the-environment"]], "Adding MPAS model as an input": [[947, "adding-mpas-model-as-an-input"]], "Adding a Machine Config File": [[337, "adding-a-machine-config-file"]], "Adding a New Supported Machine": [[337, "adding-a-new-supported-machine"]], "Adding a dynamic adjustment test": [[954, "adding-a-dynamic-adjustment-test"]], "Adding a files for E3SM test": [[954, "adding-a-files-for-e3sm-test"]], "Adding a namelist file": [[947, "adding-a-namelist-file"]], "Adding a new mesh": [[954, "adding-a-new-mesh"]], "Adding a streams file": [[947, "adding-a-streams-file"]], "Adding a template streams file": [[947, "adding-a-template-streams-file"]], "Adding a test case": [[956, "adding-a-test-case"]], "Adding a very high resolution region": [[954, "adding-a-very-high-resolution-region"]], "Adding a \u201cdefault\u201d test case": [[955, "adding-a-default-test-case"]], "Adding an initial condition and performance test": [[954, "adding-an-initial-condition-and-performance-test"]], "Adding an \u201canalysis\u201d step": [[953, "adding-an-analysis-step"]], "Adding an \u201crpe_test\u201d test case": [[955, "adding-an-rpe-test-test-case"]], "Adding namelist and streams files": [[947, "adding-namelist-and-streams-files"]], "Adding namelist options": [[947, "adding-namelist-options"]], "Adding regions of higher resolution": [[954, "adding-regions-of-higher-resolution"]], "Adding step outputs": [[955, "adding-step-outputs"]], "Adding the analysis step": [[955, "adding-the-analysis-step"], [956, 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compass.landice.tests.ensemble_generator)": [[150, "compass.landice.tests.ensemble_generator.EnsembleGenerator", false]], "ensemblemanager (class in compass.landice.tests.ensemble_generator.ensemble_manager)": [[153, "compass.landice.tests.ensemble_generator.ensemble_manager.EnsembleManager", false]], "ensemblemember (class in compass.landice.tests.ensemble_generator.ensemble_member)": [[156, "compass.landice.tests.ensemble_generator.ensemble_member.EnsembleMember", false]], "enthalpybenchmark (class in compass.landice.tests.enthalpy_benchmark)": [[171, "compass.landice.tests.enthalpy_benchmark.EnthalpyBenchmark", false]], "exact_cell_count() (in module compass.landice.tests.mismipplus.tasks)": [[298, "compass.landice.tests.mismipplus.tasks.exact_cell_count", false]], "exact_solution() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[744, "compass.ocean.tests.parabolic_bowl.viz.Viz.exact_solution", false]], "extractregion (class in 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false]], "forward (class in compass.ocean.tests.baroclinic_channel.forward)": [[367, "compass.ocean.tests.baroclinic_channel.forward.Forward", false]], "forward (class in compass.ocean.tests.baroclinic_gyre.forward)": [[390, "compass.ocean.tests.baroclinic_gyre.forward.Forward", false]], "forward (class in compass.ocean.tests.buttermilk_bay.forward)": [[403, "compass.ocean.tests.buttermilk_bay.forward.Forward", false]], "forward (class in compass.ocean.tests.dam_break.forward)": [[417, "compass.ocean.tests.dam_break.forward.Forward", false]], "forward (class in compass.ocean.tests.drying_slope.forward)": [[432, "compass.ocean.tests.drying_slope.forward.Forward", false]], "forward (class in compass.ocean.tests.global_convergence.cosine_bell.forward)": [[448, "compass.ocean.tests.global_convergence.cosine_bell.forward.Forward", false]], "forward (class in compass.ocean.tests.gotm.default.forward)": [[552, "compass.ocean.tests.gotm.default.forward.Forward", false]], "forward (class in compass.ocean.tests.hurricane.forward)": [[564, "compass.ocean.tests.hurricane.forward.Forward", false]], "forward (class in compass.ocean.tests.ice_shelf_2d.forward)": [[602, "compass.ocean.tests.ice_shelf_2d.forward.Forward", false]], "forward (class in compass.ocean.tests.internal_wave.forward)": [[618, "compass.ocean.tests.internal_wave.forward.Forward", false]], "forward (class in compass.ocean.tests.isomip_plus.forward)": [[631, "compass.ocean.tests.isomip_plus.forward.Forward", false]], "forward (class in compass.ocean.tests.lock_exchange.forward)": [[669, "compass.ocean.tests.lock_exchange.forward.Forward", false]], "forward (class in compass.ocean.tests.merry_go_round.forward)": [[682, "compass.ocean.tests.merry_go_round.forward.Forward", false]], "forward (class in compass.ocean.tests.nonhydro.solitary_wave.forward)": [[691, "compass.ocean.tests.nonhydro.solitary_wave.forward.Forward", false]], "forward (class in compass.ocean.tests.nonhydro.stratified_seiche.forward)": 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compass.ocean.tests.hurricane.forward.forward)": [[567, "compass.ocean.tests.hurricane.forward.forward.ForwardStep", false]], "forwardstep (class in compass.ocean.tests.tides.forward.forward)": [[860, "compass.ocean.tests.tides.forward.forward.ForwardStep", false]], "forwardtestcase (class in compass.ocean.tests.global_ocean.forward)": [[502, "compass.ocean.tests.global_ocean.forward.ForwardTestCase", false]], "generate_1d_grid() (in module compass.ocean.vertical.grid_1d)": [[911, "compass.ocean.vertical.grid_1d.generate_1d_grid", false]], "get_available_parallel_resources() (in module compass.parallel)": [[65, "compass.parallel.get_available_parallel_resources", false]], "get_cell_width() (compass.mesh.icosahedralmeshstep static method)": [[47, "compass.mesh.IcosahedralMeshStep.get_cell_width", false]], "get_dist_to_edge_and_gl() (in module compass.landice.mesh)": [[87, "compass.landice.mesh.get_dist_to_edge_and_gl", false]], "get_dt() 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"compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count", false]], "get_ntasks_from_cell_count() (in module compass.ocean.tests.global_ocean.tasks)": [[543, "compass.ocean.tests.global_ocean.tasks.get_ntasks_from_cell_count", false]], "get_points() (compass.ocean.tests.buttermilk_bay.viz.viz method)": [[411, "compass.ocean.tests.buttermilk_bay.viz.Viz.get_points", false]], "get_points() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[745, "compass.ocean.tests.parabolic_bowl.viz.Viz.get_points", false]], "get_subdivisions() (compass.mesh.icosahedralmeshstep static method)": [[48, "compass.mesh.IcosahedralMeshStep.get_subdivisions", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.forward method)": [[785, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.divergent_2d.forward.forward method)": [[799, "compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.nondivergent_2d.forward.forward method)": [[813, "compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.rotation_2d.forward.forward method)": [[837, "compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str", false]], "globalconvergence (class in compass.ocean.tests.global_convergence)": [[441, "compass.ocean.tests.global_convergence.GlobalConvergence", false]], "globalocean (class in compass.ocean.tests.global_ocean)": [[454, "compass.ocean.tests.global_ocean.GlobalOcean", false]], "gotm (class in compass.ocean.tests.gotm)": [[547, "compass.ocean.tests.gotm.Gotm", false]], "greenland (class in compass.landice.tests.greenland)": [[177, "compass.landice.tests.greenland.Greenland", false]], "gridded_flood_fill() 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"compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro", false]], "iceshelf2d (class in compass.ocean.tests.ice_shelf_2d)": [[597, "compass.ocean.tests.ice_shelf_2d.IceShelf2d", false]], "icosahedralmeshstep (class in compass.mesh)": [[45, "compass.mesh.IcosahedralMeshStep", false]], "icosmeshfromconfigstep (class in compass.ocean.tests.global_ocean.mesh.qu)": [[525, "compass.ocean.tests.global_ocean.mesh.qu.IcosMeshFromConfigStep", false]], "images_to_movies() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[654, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.images_to_movies", false]], "init (class in compass.ocean.tests.global_convergence.cosine_bell.init)": [[452, "compass.ocean.tests.global_convergence.cosine_bell.init.Init", false]], "init (class in compass.ocean.tests.global_ocean.init)": [[505, "compass.ocean.tests.global_ocean.init.Init", false]], "init (class in compass.ocean.tests.gotm.default.init)": [[554, "compass.ocean.tests.gotm.default.init.Init", false]], "init (class in compass.ocean.tests.hurricane.init)": [[570, "compass.ocean.tests.hurricane.init.Init", false]], "init (class in compass.ocean.tests.planar_convergence.horizontal_advection.init)": [[767, "compass.ocean.tests.planar_convergence.horizontal_advection.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.init)": [[788, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.divergent_2d.init)": [[802, "compass.ocean.tests.sphere_transport.divergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.nondivergent_2d.init)": [[816, "compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.rotation_2d.init)": [[840, "compass.ocean.tests.sphere_transport.rotation_2d.init.Init", false]], "init (class in compass.ocean.tests.tides.init)": [[863, "compass.ocean.tests.tides.init.Init", false]], "init_vertical_coord() (in module compass.ocean.vertical)": [[913, "compass.ocean.vertical.init_vertical_coord", false]], "init_z_level_vertical_coord() (in module compass.ocean.vertical.zlevel)": [[919, "compass.ocean.vertical.zlevel.init_z_level_vertical_coord", false]], "init_z_star_vertical_coord() (in module compass.ocean.vertical.zstar)": [[920, "compass.ocean.vertical.zstar.init_z_star_vertical_coord", false]], "initialstate (class in compass.ocean.tests.baroclinic_channel.initial_state)": [[370, "compass.ocean.tests.baroclinic_channel.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.baroclinic_gyre.initial_state)": [[392, "compass.ocean.tests.baroclinic_gyre.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.buttermilk_bay.initial_state)": [[407, "compass.ocean.tests.buttermilk_bay.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.dam_break.initial_state)": [[419, "compass.ocean.tests.dam_break.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.drying_slope.initial_state)": [[434, "compass.ocean.tests.drying_slope.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.global_ocean.init.initial_state)": [[508, "compass.ocean.tests.global_ocean.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.hurricane.init.initial_state)": [[576, "compass.ocean.tests.hurricane.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ice_shelf_2d.initial_state)": [[605, "compass.ocean.tests.ice_shelf_2d.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.internal_wave.initial_state)": [[620, "compass.ocean.tests.internal_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.isomip_plus.initial_state)": [[636, "compass.ocean.tests.isomip_plus.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.lock_exchange.initial_state)": [[672, "compass.ocean.tests.lock_exchange.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.merry_go_round.initial_state)": [[684, "compass.ocean.tests.merry_go_round.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.solitary_wave.initial_state)": [[694, "compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.stratified_seiche.initial_state)": [[705, "compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.overflow.initial_state)": [[720, "compass.ocean.tests.overflow.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.parabolic_bowl.initial_state)": [[739, "compass.ocean.tests.parabolic_bowl.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.soma.initial_state)": [[774, "compass.ocean.tests.soma.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.tides.init.initial_state)": [[866, "compass.ocean.tests.tides.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ziso.initial_state)": [[906, "compass.ocean.tests.ziso.initial_state.InitialState", false]], "initialstatefrominitmode (class in compass.ocean.tests.overflow.initial_state_from_init_mode)": [[722, "compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode", false]], "inject_exact_solution() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[746, "compass.ocean.tests.parabolic_bowl.viz.Viz.inject_exact_solution", false]], "internalwave (class in compass.ocean.tests.internal_wave)": [[615, "compass.ocean.tests.internal_wave.InternalWave", false]], "interp_ais_bedmachine() (in module compass.landice.mesh)": [[89, "compass.landice.mesh.interp_ais_bedmachine", false]], "interp_ais_measures() (in module compass.landice.mesh)": [[90, "compass.landice.mesh.interp_ais_measures", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.init.interpolate_atm_forcing.interpolateatmforcing method)": [[580, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.computetopographicwavedrag method)": [[585, "compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.ComputeTopographicWaveDrag.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.tides.init.interpolate_wave_drag.interpolatewavedrag method)": [[870, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag.interpolate_data_to_grid", false]], "interpolate_geom() (in module compass.ocean.tests.isomip_plus.geom)": [[634, "compass.ocean.tests.isomip_plus.geom.interpolate_geom", false]], "interpolate_ocean_mask() (in module compass.ocean.tests.isomip_plus.geom)": [[635, "compass.ocean.tests.isomip_plus.geom.interpolate_ocean_mask", false]], "interpolateatmforcing (class in compass.ocean.tests.hurricane.init.interpolate_atm_forcing)": [[579, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing", false]], "interpolatewavedrag (class in compass.ocean.tests.tides.init.interpolate_wave_drag)": [[869, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag", false]], "ismip6aisproj2300 (class in compass.landice.tests.ismip6_run.ismip6_ais_proj2300)": [[259, "compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300", false]], "ismip6forcing (class in compass.landice.tests.ismip6_forcing)": [[219, "compass.landice.tests.ismip6_forcing.Ismip6Forcing", false]], "ismip6run (class in compass.landice.tests.ismip6_run)": [[258, "compass.landice.tests.ismip6_run.Ismip6Run", false]], "isomipplus (class in compass.ocean.tests.isomip_plus)": [[629, "compass.ocean.tests.isomip_plus.IsomipPlus", false]], "isomipplustest (class in compass.ocean.tests.isomip_plus.isomip_plus_test)": [[638, "compass.ocean.tests.isomip_plus.isomip_plus_test.IsomipPlusTest", false]], "isunnguatasermia (class in compass.landice.tests.isunnguata_sermia)": [[265, "compass.landice.tests.isunnguata_sermia.IsunnguataSermia", false]], "kangerlussuaq (class in compass.landice.tests.kangerlussuaq)": [[270, "compass.landice.tests.kangerlussuaq.Kangerlussuaq", false]], "kogebugts (class in compass.landice.tests.koge_bugt_s)": [[275, "compass.landice.tests.koge_bugt_s.KogeBugtS", false]], "label_mesh() (in module compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[591, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.label_mesh", false]], "landice (class in compass.landice)": [[79, "compass.landice.Landice", false]], "list_cases() (in module compass.list)": [[41, "compass.list.list_cases", false]], "list_machines() (in module compass.list)": [[42, "compass.list.list_machines", false]], "list_suites() (in module compass.list)": [[43, "compass.list.list_suites", false]], "lockexchange (class in compass.ocean.tests.lock_exchange)": [[668, "compass.ocean.tests.lock_exchange.LockExchange", false]], "log_method_call() (in module compass.logging)": [[44, "compass.logging.log_method_call", false]], "loglaw (class in compass.ocean.tests.drying_slope.loglaw)": [[436, "compass.ocean.tests.drying_slope.loglaw.LogLaw", false]], "ltsregionsstep (class in compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[588, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.LTSRegionsStep", false]], "main() (in module compass.__main__)": [[34, "compass.__main__.main", false]], "make_convergence_arrays() (in module compass.ocean.tests.sphere_transport.process_output)": [[823, "compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays", false]], "make_graph_file() (in module compass.model)": [[61, "compass.model.make_graph_file", false]], "make_jigsaw_mesh() (compass.mesh.icosahedralmeshstep method)": [[49, "compass.mesh.IcosahedralMeshStep.make_jigsaw_mesh", false]], "make_jigsaw_mesh() (compass.mesh.quasiuniformsphericalmeshstep method)": [[54, "compass.mesh.QuasiUniformSphericalMeshStep.make_jigsaw_mesh", false]], "make_region_masks() (in module compass.landice.mesh)": [[91, "compass.landice.mesh.make_region_masks", false]], "mark_cull_cells_for_mismip() (in module compass.landice.tests.mismipplus.setup_mesh)": [[292, "compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP", false]], "merrygoround (class in compass.ocean.tests.merry_go_round)": [[677, "compass.ocean.tests.merry_go_round.MerryGoRound", false]], "mesh (class in compass.landice.tests.antarctica.mesh)": [[97, "compass.landice.tests.antarctica.mesh.Mesh", false]], "mesh (class in compass.landice.tests.crane.mesh)": [[116, "compass.landice.tests.crane.mesh.Mesh", false]], "mesh (class in compass.landice.tests.greenland.mesh)": [[180, "compass.landice.tests.greenland.mesh.Mesh", false]], "mesh (class in compass.landice.tests.humboldt.mesh)": [[194, "compass.landice.tests.humboldt.mesh.Mesh", false]], "mesh (class in compass.landice.tests.isunnguata_sermia.mesh)": [[266, "compass.landice.tests.isunnguata_sermia.mesh.Mesh", false]], "mesh (class in compass.landice.tests.kangerlussuaq.mesh)": [[271, "compass.landice.tests.kangerlussuaq.mesh.Mesh", false]], "mesh (class in compass.landice.tests.koge_bugt_s.mesh)": [[276, "compass.landice.tests.koge_bugt_s.mesh.Mesh", false]], "mesh (class in compass.landice.tests.thwaites.mesh)": [[303, "compass.landice.tests.thwaites.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.global_ocean.mesh)": [[520, "compass.ocean.tests.global_ocean.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.hurricane.mesh)": [[592, "compass.ocean.tests.hurricane.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh)": [[790, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.divergent_2d.mesh)": [[804, "compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.nondivergent_2d.mesh)": [[818, "compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.rotation_2d.mesh)": [[842, "compass.ocean.tests.sphere_transport.rotation_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.tides.mesh)": [[876, "compass.ocean.tests.tides.mesh.Mesh", false]], "meshgen (class in compass.landice.tests.antarctica.mesh_gen)": [[99, "compass.landice.tests.antarctica.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.crane.mesh_gen)": [[118, "compass.landice.tests.crane.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.greenland.mesh_gen)": [[182, "compass.landice.tests.greenland.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.humboldt.mesh_gen)": [[196, "compass.landice.tests.humboldt.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.isunnguata_sermia.mesh_gen)": [[268, "compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.kangerlussuaq.mesh_gen)": [[273, "compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.koge_bugt_s.mesh_gen)": [[278, "compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.thwaites.mesh_gen)": [[305, "compass.landice.tests.thwaites.mesh_gen.MeshGen", false]], "meshmodifications (class in compass.landice.tests.mesh_modifications)": [[280, "compass.landice.tests.mesh_modifications.MeshModifications", false]], "mismipplus (class in compass.landice.tests.mismipplus)": [[283, "compass.landice.tests.mismipplus.MISMIPplus", false]], "misomip (class in compass.ocean.tests.isomip_plus.misomip)": [[641, "compass.ocean.tests.isomip_plus.misomip.Misomip", false]], "moc (class in compass.ocean.tests.baroclinic_gyre.moc)": [[394, "compass.ocean.tests.baroclinic_gyre.moc.Moc", false]], "module": [[80, "module-compass.landice.ais_observations", false], [563, "module-compass.ocean.tests.hurricane.configure", false], [856, "module-compass.ocean.tests.tides.configure", false]], "movieplotter (class in compass.ocean.tests.isomip_plus.viz.plot)": [[653, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter", false]], "mpas_flood_fill() (in module compass.landice.mesh)": [[92, "compass.landice.mesh.mpas_flood_fill", false]], "mpascore (class in compass)": [[10, "compass.MpasCore", false]], "nondivergent2d (class in compass.ocean.tests.sphere_transport.nondivergent_2d)": [[807, "compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D", false]], "nonhydro (class in compass.ocean.tests.lock_exchange.nonhydro)": [[674, "compass.ocean.tests.lock_exchange.nonhydro.Nonhydro", false]], "nonhydro (class in compass.ocean.tests.nonhydro)": [[688, "compass.ocean.tests.nonhydro.Nonhydro", false]], "nonhydro (class in compass.ocean.tests.overflow.nonhydro)": [[724, "compass.ocean.tests.overflow.nonhydro.Nonhydro", false]], "ocean (class in compass.ocean)": [[341, "compass.ocean.Ocean", false]], "oceanbasal (class in compass.landice.tests.ismip6_forcing.ocean_basal)": [[237, "compass.landice.tests.ismip6_forcing.ocean_basal.OceanBasal", false]], "oceangraphpartition (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_graph_partition)": [[475, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_graph_partition.OceanGraphPartition", false]], "oceaninitialcondition (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_initial_condition)": [[477, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_initial_condition.OceanInitialCondition", false]], "oceanmesh (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_mesh)": [[479, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_mesh.OceanMesh", false]], "oceanthermal (class in compass.landice.tests.ismip6_forcing.ocean_thermal)": [[245, "compass.landice.tests.ismip6_forcing.ocean_thermal.OceanThermal", false]], "overflow (class in compass.ocean.tests.overflow)": [[711, "compass.ocean.tests.overflow.Overflow", false]], "package_path() (in module compass.io)": [[39, "compass.io.package_path", false]], "parabolicbowl (class in compass.ocean.tests.parabolic_bowl)": [[730, "compass.ocean.tests.parabolic_bowl.ParabolicBowl", false]], "partition() (in module compass.model)": [[62, "compass.model.partition", false]], "performancetest (class in compass.ocean.tests.global_ocean.performance_test)": [[537, "compass.ocean.tests.global_ocean.performance_test.PerformanceTest", false]], "planarconvergence (class in compass.ocean.tests.planar_convergence)": [[750, "compass.ocean.tests.planar_convergence.PlanarConvergence", false]], "plot() (compass.ocean.tests.tides.analysis.analysis method)": [[849, "compass.ocean.tests.tides.analysis.Analysis.plot", false]], "plot_3d_field_top_bot_section() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[655, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_3d_field_top_bot_section", false]], "plot_barotropic_streamfunction() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[656, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_barotropic_streamfunction", false]], "plot_convergence() (in module compass.ocean.tests.sphere_transport.process_output)": [[824, "compass.ocean.tests.sphere_transport.process_output.plot_convergence", false]], "plot_filament() (in module compass.ocean.tests.sphere_transport.process_output)": [[825, "compass.ocean.tests.sphere_transport.process_output.plot_filament", false]], "plot_horiz_series() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[657, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_horiz_series", false]], "plot_ice_shelf_boundary_variables() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[658, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_ice_shelf_boundary_variables", false]], "plot_initial_state() (in module compass.ocean.plot)": [[357, "compass.ocean.plot.plot_initial_state", false]], "plot_interp_data() (compass.ocean.tests.hurricane.init.interpolate_atm_forcing.interpolateatmforcing method)": [[581, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing.plot_interp_data", false]], "plot_interp_data() (compass.ocean.tests.tides.init.interpolate_wave_drag.interpolatewavedrag method)": [[871, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag.plot_interp_data", false]], "plot_layer_interfaces() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[659, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_layer_interfaces", false]], "plot_melt_rates() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[660, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_melt_rates", false]], "plot_melt_time_series() (compass.ocean.tests.isomip_plus.viz.plot.timeseriesplotter method)": [[666, "compass.ocean.tests.isomip_plus.viz.plot.TimeSeriesPlotter.plot_melt_time_series", false]], "plot_over_and_undershoot_errors() (in module compass.ocean.tests.sphere_transport.process_output)": [[826, "compass.ocean.tests.sphere_transport.process_output.plot_over_and_undershoot_errors", false]], "plot_overturning_streamfunction() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[661, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_overturning_streamfunction", false]], "plot_potential_density() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[662, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_potential_density", false]], "plot_salinity() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[663, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_salinity", false]], "plot_sol() (in module compass.ocean.tests.sphere_transport.process_output)": [[827, "compass.ocean.tests.sphere_transport.process_output.plot_sol", false]], "plot_temperature() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[664, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_temperature", false]], "plot_time_series() (compass.ocean.tests.isomip_plus.viz.plot.timeseriesplotter method)": [[667, "compass.ocean.tests.isomip_plus.viz.plot.TimeSeriesPlotter.plot_time_series", false]], "plot_vertical_grid() (in module compass.ocean.plot)": [[358, "compass.ocean.plot.plot_vertical_grid", false]], "preprocess_ais_data() (in module compass.landice.mesh)": [[93, "compass.landice.mesh.preprocess_ais_data", false]], "print_data_as_csv() (in module compass.ocean.tests.sphere_transport.process_output)": [[828, "compass.ocean.tests.sphere_transport.process_output.print_data_as_csv", false]], "print_error_conv_table() (in module compass.ocean.tests.sphere_transport.process_output)": [[829, "compass.ocean.tests.sphere_transport.process_output.print_error_conv_table", false]], "processbasalmelt (class in compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt)": [[239, "compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt.ProcessBasalMelt", false]], "processgeom (class in compass.ocean.tests.isomip_plus.process_geom)": [[643, "compass.ocean.tests.isomip_plus.process_geom.ProcessGeom", false]], "processsmb (class in compass.landice.tests.ismip6_forcing.atmosphere.process_smb)": [[222, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb.ProcessSMB", false]], "processsmbracmo (class in compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo)": [[228, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.ProcessSmbRacmo", false]], "processthermalforcing (class in compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing)": [[247, "compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing.ProcessThermalForcing", false]], "quasiuniformsphericalmeshstep (class in compass.mesh)": [[52, "compass.mesh.QuasiUniformSphericalMeshStep", false]], "qumeshfromconfigstep (class in compass.ocean.tests.global_ocean.mesh.qu)": [[527, "compass.ocean.tests.global_ocean.mesh.qu.QUMeshFromConfigStep", false]], "read_ncl_rgb_file() (in module compass.ocean.tests.sphere_transport.process_output)": [[830, "compass.ocean.tests.sphere_transport.process_output.read_ncl_rgb_file", false]], "read_otps2_output() (compass.ocean.tests.tides.analysis.analysis method)": [[850, "compass.ocean.tests.tides.analysis.Analysis.read_otps2_output", false]], "read_pointstats() (compass.ocean.tests.hurricane.analysis.analysis method)": [[558, "compass.ocean.tests.hurricane.analysis.Analysis.read_pointstats", false]], "read_station_data() (compass.ocean.tests.hurricane.analysis.analysis method)": [[559, "compass.ocean.tests.hurricane.analysis.Analysis.read_station_data", false]], "read_station_file() (compass.ocean.tests.hurricane.analysis.analysis method)": [[560, "compass.ocean.tests.hurricane.analysis.Analysis.read_station_file", false]], "remap_adusumilli() (in module compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt)": [[513, "compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt.remap_adusumilli", false]], "remap_ismip6_basal_melt_to_mali_vars() (compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt.processbasalmelt method)": [[241, "compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt.ProcessBasalMelt.remap_ismip6_basal_melt_to_mali_vars", false]], "remap_ismip6_shelf_mask_to_mali_vars() (compass.landice.tests.ismip6_forcing.shelf_collapse.process_shelf_collapse.processshelfcollapse method)": [[254, "compass.landice.tests.ismip6_forcing.shelf_collapse.process_shelf_collapse.ProcessShelfCollapse.remap_ismip6_shelf_mask_to_mali_vars", false]], "remap_ismip6_smb_to_mali() (compass.landice.tests.ismip6_forcing.atmosphere.process_smb.processsmb method)": [[224, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb.ProcessSMB.remap_ismip6_smb_to_mali", false]], "remap_ismip6_thermal_forcing_to_mali_vars() (compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing.processthermalforcing method)": [[248, "compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing.ProcessThermalForcing.remap_ismip6_thermal_forcing_to_mali_vars", false]], "remap_paolo() (in module compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt)": [[514, "compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt.remap_paolo", false]], "remap_particles() (in module compass.ocean.particles)": [[355, "compass.ocean.particles.remap_particles", false]], "remap_source_smb_to_mali() (compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.processsmbracmo method)": [[230, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.ProcessSmbRacmo.remap_source_smb_to_mali", false]], "remapbathymetry (class in compass.ocean.tests.tides.init.remap_bathymetry)": [[874, "compass.ocean.tests.tides.init.remap_bathymetry.RemapBathymetry", false]], "remapicebergclimatology (class in compass.ocean.tests.global_ocean.files_for_e3sm.remap_iceberg_climatology)": [[483, "compass.ocean.tests.global_ocean.files_for_e3sm.remap_iceberg_climatology.RemapIcebergClimatology", false]], "remapiceshelfmelt (class in compass.ocean.tests.global_ocean.files_for_e3sm.remap_ice_shelf_melt)": [[481, "compass.ocean.tests.global_ocean.files_for_e3sm.remap_ice_shelf_melt.RemapIceShelfMelt", false]], "remapiceshelfmelt (class in compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt)": [[511, "compass.ocean.tests.global_ocean.init.remap_ice_shelf_melt.RemapIceShelfMelt", false]], "remapseasurfacesalinityrestoring (class in compass.ocean.tests.global_ocean.files_for_e3sm.remap_sea_surface_salinity_restoring)": [[485, "compass.ocean.tests.global_ocean.files_for_e3sm.remap_sea_surface_salinity_restoring.RemapSeaSurfaceSalinityRestoring", false]], "remaptidalmixing (class in compass.ocean.tests.global_ocean.files_for_e3sm.remap_tidal_mixing)": [[487, "compass.ocean.tests.global_ocean.files_for_e3sm.remap_tidal_mixing.RemapTidalMixing", false]], "remaptopography (class in compass.ocean.mesh.remap_topography)": [[351, "compass.ocean.mesh.remap_topography.RemapTopography", false]], "remaptopography (class in compass.ocean.tests.utility.extrap_woa)": [[894, "compass.ocean.tests.utility.extrap_woa.RemapTopography", false]], "rename_ismip6_basal_melt_to_mali_vars() (compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt.processbasalmelt method)": [[242, "compass.landice.tests.ismip6_forcing.ocean_basal.process_basal_melt.ProcessBasalMelt.rename_ismip6_basal_melt_to_mali_vars", false]], "rename_ismip6_shelf_mask_to_mali_vars() (compass.landice.tests.ismip6_forcing.shelf_collapse.process_shelf_collapse.processshelfcollapse method)": [[255, "compass.landice.tests.ismip6_forcing.shelf_collapse.process_shelf_collapse.ProcessShelfCollapse.rename_ismip6_shelf_mask_to_mali_vars", false]], "rename_ismip6_smb_to_mali_vars() (compass.landice.tests.ismip6_forcing.atmosphere.process_smb.processsmb method)": [[225, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb.ProcessSMB.rename_ismip6_smb_to_mali_vars", false]], "rename_ismip6_thermal_forcing_to_mali_vars() (compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing.processthermalforcing method)": [[249, "compass.landice.tests.ismip6_forcing.ocean_thermal.process_thermal_forcing.ProcessThermalForcing.rename_ismip6_thermal_forcing_to_mali_vars", false]], "rename_source_smb_to_mali_vars() (compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.processsmbracmo method)": [[231, "compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.ProcessSmbRacmo.rename_source_smb_to_mali_vars", false]], "restarttest (class in compass.landice.tests.dome.restart_test)": [[123, "compass.landice.tests.dome.restart_test.RestartTest", false]], "restarttest (class in compass.landice.tests.eismint2.restart_test)": [[138, "compass.landice.tests.eismint2.restart_test.RestartTest", false]], "restarttest (class in compass.landice.tests.greenland.restart_test)": [[184, "compass.landice.tests.greenland.restart_test.RestartTest", false]], "restarttest (class in compass.landice.tests.humboldt.restart_test)": [[198, "compass.landice.tests.humboldt.restart_test.RestartTest", false]], "restarttest (class in compass.landice.tests.hydro_radial.restart_test)": [[205, "compass.landice.tests.hydro_radial.restart_test.RestartTest", false]], "restarttest (class in compass.landice.tests.thwaites.restart_test)": [[307, "compass.landice.tests.thwaites.restart_test.RestartTest", false]], "restarttest (class in compass.ocean.tests.baroclinic_channel.restart_test)": [[373, "compass.ocean.tests.baroclinic_channel.restart_test.RestartTest", false]], "restarttest (class in compass.ocean.tests.global_ocean.restart_test)": [[540, "compass.ocean.tests.global_ocean.restart_test.RestartTest", false]], "restarttest (class in compass.ocean.tests.ice_shelf_2d.restart_test)": [[607, "compass.ocean.tests.ice_shelf_2d.restart_test.RestartTest", false]], "rmse() (compass.ocean.tests.global_convergence.cosine_bell.analysis.analysis method)": [[446, 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\ No newline at end of file
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streams file": [[946, "adding-a-streams-file"]], "Adding a template streams file": [[946, "adding-a-template-streams-file"]], "Adding a test case": [[955, "adding-a-test-case"]], "Adding a very high resolution region": [[953, "adding-a-very-high-resolution-region"]], "Adding a \u201cdefault\u201d test case": [[954, "adding-a-default-test-case"]], "Adding an initial condition and performance test": [[953, "adding-an-initial-condition-and-performance-test"]], "Adding an \u201canalysis\u201d step": [[952, "adding-an-analysis-step"]], "Adding an \u201crpe_test\u201d test case": [[954, "adding-an-rpe-test-test-case"]], "Adding namelist and streams files": [[946, "adding-namelist-and-streams-files"]], "Adding namelist options": [[946, "adding-namelist-options"]], "Adding regions of higher resolution": [[953, "adding-regions-of-higher-resolution"]], "Adding step outputs": [[954, "adding-step-outputs"]], "Adding the analysis step": [[954, "adding-the-analysis-step"], [955, "adding-the-analysis-step"]], "Adding the forward step": [[954, "adding-the-forward-step"], [955, "adding-the-forward-step"]], "Adding the init step": [[955, "adding-the-init-step"]], "Adding the initial_state step": [[954, "adding-the-initial-state-step"]], "Adding the steps to the test case": [[952, "adding-the-steps-to-the-test-case"], [954, "adding-the-steps-to-the-test-case"], [954, "id1"]], "Adding validation": [[955, "adding-validation"]], "Adding \u201cmesh\u201d, \u201cinit\u201d and \u201cforward\u201d steps": [[952, "adding-mesh-init-and-forward-steps"]], "Algorithm Design": [[1, "algorithm-design"]], "Algorithm Design (optional)": [[3, "algorithm-design-optional"]], "Algorithm Design: name-of-topic-here (same as Requirement)": [[3, "algorithm-design-name-of-topic-here-same-as-requirement"]], "Algorithm design: Ability specify/modify core counts": [[1, "algorithm-design-ability-specify-modify-core-counts"]], "Algorithm design: Considerations related to running test cases in 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[[701, "compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward", false]], "forward (class in compass.ocean.tests.overflow.forward)": [[712, "compass.ocean.tests.overflow.forward.Forward", false]], "forward (class in compass.ocean.tests.overflow.hydro_vs_nonhydro.forward)": [[715, "compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward", false]], "forward (class in compass.ocean.tests.overflow.nonhydro.forward)": [[724, "compass.ocean.tests.overflow.nonhydro.forward.Forward", false]], "forward (class in compass.ocean.tests.parabolic_bowl.forward)": [[734, "compass.ocean.tests.parabolic_bowl.forward.Forward", false]], "forward (class in compass.ocean.tests.planar_convergence.forward)": [[756, "compass.ocean.tests.planar_convergence.forward.Forward", false]], "forward (class in compass.ocean.tests.soma.forward)": [[771, "compass.ocean.tests.soma.forward.Forward", false]], "forward (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward)": [[783, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward", false]], "forward (class in compass.ocean.tests.sphere_transport.divergent_2d.forward)": [[797, "compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward", false]], "forward (class in compass.ocean.tests.sphere_transport.nondivergent_2d.forward)": [[811, "compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward", false]], "forward (class in compass.ocean.tests.sphere_transport.rotation_2d.forward)": [[835, "compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward", false]], "forward (class in compass.ocean.tests.tides.forward)": [[856, "compass.ocean.tests.tides.forward.Forward", false]], "forward (class in compass.ocean.tests.ziso.forward)": [[902, "compass.ocean.tests.ziso.forward.Forward", false]], "forwardstep (class in compass.ocean.tests.global_ocean.forward)": [[498, "compass.ocean.tests.global_ocean.forward.ForwardStep", false]], "forwardstep (class in compass.ocean.tests.hurricane.forward.forward)": [[566, "compass.ocean.tests.hurricane.forward.forward.ForwardStep", false]], "forwardstep (class in compass.ocean.tests.tides.forward.forward)": [[859, "compass.ocean.tests.tides.forward.forward.ForwardStep", false]], "forwardtestcase (class in compass.ocean.tests.global_ocean.forward)": [[501, "compass.ocean.tests.global_ocean.forward.ForwardTestCase", false]], "generate_1d_grid() (in module compass.ocean.vertical.grid_1d)": [[910, "compass.ocean.vertical.grid_1d.generate_1d_grid", false]], "get_available_parallel_resources() (in module compass.parallel)": [[65, "compass.parallel.get_available_parallel_resources", false]], "get_cell_width() (compass.mesh.icosahedralmeshstep static method)": [[47, "compass.mesh.IcosahedralMeshStep.get_cell_width", false]], "get_dist_to_edge_and_gl() (in module compass.landice.mesh)": [[87, "compass.landice.mesh.get_dist_to_edge_and_gl", false]], "get_dt() (compass.ocean.tests.buttermilk_bay.forward.forward method)": [[403, "compass.ocean.tests.buttermilk_bay.forward.Forward.get_dt", false]], "get_dt() (compass.ocean.tests.global_convergence.cosine_bell.forward.forward method)": [[448, "compass.ocean.tests.global_convergence.cosine_bell.forward.Forward.get_dt", false]], "get_dt() (compass.ocean.tests.parabolic_bowl.forward.forward method)": [[735, "compass.ocean.tests.parabolic_bowl.forward.Forward.get_dt", false]], "get_dt_duration() (compass.ocean.tests.planar_convergence.forward.forward method)": [[757, "compass.ocean.tests.planar_convergence.forward.Forward.get_dt_duration", false]], "get_e3sm_mesh_names() (in module compass.ocean.tests.global_ocean.metadata)": [[535, "compass.ocean.tests.global_ocean.metadata.get_e3sm_mesh_names", false]], "get_mpas_cores() (in module compass.mpas_cores)": [[64, "compass.mpas_cores.get_mpas_cores", false]], "get_ntasks_from_cell_count() (in module compass.landice.tests.mismipplus.tasks)": [[298, "compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count", false]], "get_ntasks_from_cell_count() (in module compass.ocean.tests.global_ocean.tasks)": [[542, "compass.ocean.tests.global_ocean.tasks.get_ntasks_from_cell_count", false]], "get_points() (compass.ocean.tests.buttermilk_bay.viz.viz method)": [[410, "compass.ocean.tests.buttermilk_bay.viz.Viz.get_points", false]], "get_points() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[744, "compass.ocean.tests.parabolic_bowl.viz.Viz.get_points", false]], "get_subdivisions() (compass.mesh.icosahedralmeshstep static method)": [[48, "compass.mesh.IcosahedralMeshStep.get_subdivisions", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.forward method)": [[784, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.divergent_2d.forward.forward method)": [[798, "compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.nondivergent_2d.forward.forward method)": [[812, "compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.rotation_2d.forward.forward method)": [[836, "compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str", false]], "globalconvergence (class in compass.ocean.tests.global_convergence)": [[440, "compass.ocean.tests.global_convergence.GlobalConvergence", false]], "globalocean (class in compass.ocean.tests.global_ocean)": [[453, "compass.ocean.tests.global_ocean.GlobalOcean", false]], "gotm (class in compass.ocean.tests.gotm)": [[546, "compass.ocean.tests.gotm.Gotm", false]], "greenland (class in compass.landice.tests.greenland)": [[176, "compass.landice.tests.greenland.Greenland", false]], "gridded_flood_fill() (in module compass.landice.mesh)": [[88, "compass.landice.mesh.gridded_flood_fill", false]], "gyretestcase (class in compass.ocean.tests.baroclinic_gyre)": [[385, "compass.ocean.tests.baroclinic_gyre.GyreTestCase", false]], "horizontaladvection (class in compass.ocean.tests.planar_convergence.horizontal_advection)": [[760, "compass.ocean.tests.planar_convergence.horizontal_advection.HorizontalAdvection", false]], "humboldt (class in compass.landice.tests.humboldt)": [[190, "compass.landice.tests.humboldt.Humboldt", false]], "hurricane (class in compass.ocean.tests.hurricane)": [[555, "compass.ocean.tests.hurricane.Hurricane", false]], "hydro (class in compass.ocean.tests.lock_exchange.hydro)": [[670, "compass.ocean.tests.lock_exchange.hydro.Hydro", false]], "hydroradial (class in compass.landice.tests.hydro_radial)": [[201, "compass.landice.tests.hydro_radial.HydroRadial", false]], "hydrovsnonhydro (class in compass.ocean.tests.overflow.hydro_vs_nonhydro)": [[714, "compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro", false]], "iceshelf2d (class in compass.ocean.tests.ice_shelf_2d)": [[596, "compass.ocean.tests.ice_shelf_2d.IceShelf2d", false]], "icosahedralmeshstep (class in compass.mesh)": [[45, "compass.mesh.IcosahedralMeshStep", false]], "icosmeshfromconfigstep (class in compass.ocean.tests.global_ocean.mesh.qu)": [[524, "compass.ocean.tests.global_ocean.mesh.qu.IcosMeshFromConfigStep", false]], "images_to_movies() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[653, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.images_to_movies", false]], "init (class in compass.ocean.tests.global_convergence.cosine_bell.init)": [[451, "compass.ocean.tests.global_convergence.cosine_bell.init.Init", false]], "init (class in compass.ocean.tests.global_ocean.init)": [[504, "compass.ocean.tests.global_ocean.init.Init", false]], "init (class in compass.ocean.tests.gotm.default.init)": [[553, "compass.ocean.tests.gotm.default.init.Init", false]], "init (class in compass.ocean.tests.hurricane.init)": [[569, "compass.ocean.tests.hurricane.init.Init", false]], "init (class in compass.ocean.tests.planar_convergence.horizontal_advection.init)": [[766, "compass.ocean.tests.planar_convergence.horizontal_advection.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.init)": [[787, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.divergent_2d.init)": [[801, "compass.ocean.tests.sphere_transport.divergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.nondivergent_2d.init)": [[815, "compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.rotation_2d.init)": [[839, "compass.ocean.tests.sphere_transport.rotation_2d.init.Init", false]], "init (class in compass.ocean.tests.tides.init)": [[862, "compass.ocean.tests.tides.init.Init", false]], "init_vertical_coord() (in module compass.ocean.vertical)": [[912, "compass.ocean.vertical.init_vertical_coord", false]], "init_z_level_vertical_coord() (in module compass.ocean.vertical.zlevel)": [[918, "compass.ocean.vertical.zlevel.init_z_level_vertical_coord", false]], "init_z_star_vertical_coord() (in module compass.ocean.vertical.zstar)": [[919, "compass.ocean.vertical.zstar.init_z_star_vertical_coord", false]], "initialstate (class in compass.ocean.tests.baroclinic_channel.initial_state)": [[369, "compass.ocean.tests.baroclinic_channel.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.baroclinic_gyre.initial_state)": [[391, "compass.ocean.tests.baroclinic_gyre.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.buttermilk_bay.initial_state)": [[406, "compass.ocean.tests.buttermilk_bay.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.dam_break.initial_state)": [[418, "compass.ocean.tests.dam_break.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.drying_slope.initial_state)": [[433, "compass.ocean.tests.drying_slope.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.global_ocean.init.initial_state)": [[507, "compass.ocean.tests.global_ocean.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.hurricane.init.initial_state)": [[575, "compass.ocean.tests.hurricane.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ice_shelf_2d.initial_state)": [[604, "compass.ocean.tests.ice_shelf_2d.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.internal_wave.initial_state)": [[619, "compass.ocean.tests.internal_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.isomip_plus.initial_state)": [[635, "compass.ocean.tests.isomip_plus.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.lock_exchange.initial_state)": [[671, "compass.ocean.tests.lock_exchange.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.merry_go_round.initial_state)": [[683, "compass.ocean.tests.merry_go_round.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.solitary_wave.initial_state)": [[693, "compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.stratified_seiche.initial_state)": [[704, "compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.overflow.initial_state)": [[719, "compass.ocean.tests.overflow.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.parabolic_bowl.initial_state)": [[738, "compass.ocean.tests.parabolic_bowl.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.soma.initial_state)": [[773, "compass.ocean.tests.soma.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.tides.init.initial_state)": [[865, "compass.ocean.tests.tides.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ziso.initial_state)": [[905, "compass.ocean.tests.ziso.initial_state.InitialState", false]], "initialstatefrominitmode (class in compass.ocean.tests.overflow.initial_state_from_init_mode)": [[721, "compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode", false]], "inject_exact_solution() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[745, "compass.ocean.tests.parabolic_bowl.viz.Viz.inject_exact_solution", false]], "internalwave (class in compass.ocean.tests.internal_wave)": [[614, "compass.ocean.tests.internal_wave.InternalWave", false]], "interp_gridded2mali() (in module compass.landice.mesh)": [[89, "compass.landice.mesh.interp_gridded2mali", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.init.interpolate_atm_forcing.interpolateatmforcing method)": [[579, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.computetopographicwavedrag method)": [[584, "compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.ComputeTopographicWaveDrag.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.tides.init.interpolate_wave_drag.interpolatewavedrag method)": [[869, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag.interpolate_data_to_grid", false]], "interpolate_geom() (in module compass.ocean.tests.isomip_plus.geom)": [[633, "compass.ocean.tests.isomip_plus.geom.interpolate_geom", false]], "interpolate_ocean_mask() (in module compass.ocean.tests.isomip_plus.geom)": [[634, "compass.ocean.tests.isomip_plus.geom.interpolate_ocean_mask", false]], "interpolateatmforcing (class in compass.ocean.tests.hurricane.init.interpolate_atm_forcing)": [[578, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing", false]], "interpolatewavedrag (class in compass.ocean.tests.tides.init.interpolate_wave_drag)": [[868, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag", false]], "ismip6aisproj2300 (class in compass.landice.tests.ismip6_run.ismip6_ais_proj2300)": [[258, "compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300", false]], "ismip6forcing (class in compass.landice.tests.ismip6_forcing)": [[218, "compass.landice.tests.ismip6_forcing.Ismip6Forcing", false]], "ismip6run (class in compass.landice.tests.ismip6_run)": [[257, "compass.landice.tests.ismip6_run.Ismip6Run", false]], "isomipplus (class in compass.ocean.tests.isomip_plus)": [[628, "compass.ocean.tests.isomip_plus.IsomipPlus", false]], "isomipplustest (class in compass.ocean.tests.isomip_plus.isomip_plus_test)": [[637, "compass.ocean.tests.isomip_plus.isomip_plus_test.IsomipPlusTest", false]], "isunnguatasermia (class in compass.landice.tests.isunnguata_sermia)": [[264, "compass.landice.tests.isunnguata_sermia.IsunnguataSermia", false]], "kangerlussuaq (class in compass.landice.tests.kangerlussuaq)": [[269, "compass.landice.tests.kangerlussuaq.Kangerlussuaq", false]], "kogebugts (class in compass.landice.tests.koge_bugt_s)": [[274, "compass.landice.tests.koge_bugt_s.KogeBugtS", false]], "label_mesh() (in module compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[590, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.label_mesh", false]], "landice (class in compass.landice)": [[79, "compass.landice.Landice", false]], "list_cases() (in module compass.list)": [[41, "compass.list.list_cases", false]], "list_machines() (in module compass.list)": [[42, "compass.list.list_machines", false]], "list_suites() (in module compass.list)": [[43, "compass.list.list_suites", false]], "lockexchange (class in compass.ocean.tests.lock_exchange)": [[667, "compass.ocean.tests.lock_exchange.LockExchange", false]], "log_method_call() (in module compass.logging)": [[44, "compass.logging.log_method_call", false]], "loglaw (class in compass.ocean.tests.drying_slope.loglaw)": [[435, "compass.ocean.tests.drying_slope.loglaw.LogLaw", false]], "ltsregionsstep (class in compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[587, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.LTSRegionsStep", false]], "main() (in module compass.__main__)": [[34, "compass.__main__.main", false]], "make_convergence_arrays() (in module compass.ocean.tests.sphere_transport.process_output)": [[822, "compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays", false]], "make_graph_file() (in module compass.model)": [[61, "compass.model.make_graph_file", false]], "make_jigsaw_mesh() (compass.mesh.icosahedralmeshstep method)": [[49, "compass.mesh.IcosahedralMeshStep.make_jigsaw_mesh", false]], "make_jigsaw_mesh() (compass.mesh.quasiuniformsphericalmeshstep method)": [[54, "compass.mesh.QuasiUniformSphericalMeshStep.make_jigsaw_mesh", false]], "make_region_masks() (in module compass.landice.mesh)": [[90, "compass.landice.mesh.make_region_masks", false]], "mark_cull_cells_for_mismip() (in module compass.landice.tests.mismipplus.setup_mesh)": [[291, "compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP", false]], "merrygoround (class in compass.ocean.tests.merry_go_round)": [[676, "compass.ocean.tests.merry_go_round.MerryGoRound", false]], "mesh (class in compass.landice.tests.antarctica.mesh)": [[96, "compass.landice.tests.antarctica.mesh.Mesh", false]], "mesh (class in compass.landice.tests.crane.mesh)": [[115, "compass.landice.tests.crane.mesh.Mesh", false]], "mesh (class in compass.landice.tests.greenland.mesh)": [[179, "compass.landice.tests.greenland.mesh.Mesh", false]], "mesh (class in compass.landice.tests.humboldt.mesh)": [[193, "compass.landice.tests.humboldt.mesh.Mesh", false]], "mesh (class in compass.landice.tests.isunnguata_sermia.mesh)": [[265, "compass.landice.tests.isunnguata_sermia.mesh.Mesh", false]], "mesh (class in compass.landice.tests.kangerlussuaq.mesh)": [[270, "compass.landice.tests.kangerlussuaq.mesh.Mesh", false]], "mesh (class in compass.landice.tests.koge_bugt_s.mesh)": [[275, "compass.landice.tests.koge_bugt_s.mesh.Mesh", false]], "mesh (class in compass.landice.tests.thwaites.mesh)": [[302, "compass.landice.tests.thwaites.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.global_ocean.mesh)": [[519, "compass.ocean.tests.global_ocean.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.hurricane.mesh)": [[591, "compass.ocean.tests.hurricane.mesh.Mesh", false]], "mesh (class in 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372, 373, 374, 539, 540, 541, 606, 607, 608, 921, 927, 930, 964, 965, 968, 969, 970, 979, 992, 998, 1001], "restarttest": [122, 123, 137, 138, 183, 184, 197, 198, 204, 205, 306, 307, 316, 372, 373, 374, 539, 540, 541, 606, 607, 608], "rmse": [445, 764], "rmse_plot": 746, "rotation2d": [830, 831, 832], "rotation_2d": [338, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 941, 1012], "rpe_test": [375, 376, 377, 378, 379, 380, 621, 622, 623, 726, 727, 728, 921, 932, 937, 954, 992, 1003, 1008], "rpetest": [375, 376, 377, 621, 726], "rrm": 953, "rrs6to18": [528, 529, 927, 998], "rrs6to18basemesh": [528, 529], "rrswisc6to18": [927, 998], "run": [1, 4, 6, 9, 20, 30, 50, 55, 58, 69, 70, 97, 103, 106, 108, 110, 112, 116, 118, 121, 123, 125, 128, 130, 132, 136, 138, 140, 143, 145, 147, 153, 156, 162, 164, 167, 169, 172, 175, 178, 180, 182, 184, 186, 189, 194, 196, 200, 203, 205, 207, 210, 212, 214, 216, 225, 231, 242, 249, 255, 260, 262, 266, 268, 271, 273, 276, 278, 285, 288, 301, 303, 305, 307, 309, 345, 349, 352, 362, 365, 367, 370, 374, 377, 379, 383, 388, 390, 392, 394, 396, 404, 407, 411, 417, 419, 421, 424, 432, 434, 439, 443, 446, 449, 452, 456, 459, 462, 467, 469, 471, 473, 475, 477, 479, 481, 483, 485, 487, 489, 491, 493, 495, 497, 499, 503, 506, 508, 511, 515, 518, 521, 538, 541, 545, 550, 552, 554, 560, 565, 567, 571, 574, 576, 581, 585, 588, 593, 600, 602, 605, 608, 610, 613, 618, 620, 623, 627, 631, 636, 639, 641, 643, 645, 648, 650, 669, 672, 675, 678, 682, 684, 686, 691, 694, 697, 702, 705, 708, 713, 716, 718, 720, 722, 725, 728, 736, 739, 747, 751, 754, 758, 762, 765, 767, 770, 772, 774, 780, 782, 785, 788, 791, 794, 796, 799, 802, 805, 808, 810, 813, 816, 819, 832, 834, 837, 840, 843, 850, 858, 860, 864, 866, 871, 874, 877, 880, 884, 887, 890, 895, 900, 903, 906, 909, 946, 948, 953, 954, 955, 966, 973, 1004, 1017], "run_command": 66, "run_experi": [139, 140, 141, 317], "run_model": [63, 102, 103, 107, 108, 124, 125, 126, 171, 172, 173, 185, 186, 187, 199, 200, 206, 207, 208, 283, 284, 285, 286, 308, 309, 310, 319, 320, 321, 322, 330, 331], "run_otps2": 851, "run_single_step": 69, "run_test": 70, "runexperi": [139, 140, 141], "runmodel": [102, 103, 107, 108, 124, 125, 126, 171, 172, 173, 185, 186, 187, 199, 200, 206, 207, 208, 283, 284, 285, 286, 308, 309, 310, 313, 314, 316], "runtim": 946, "runtime_setup": [21, 946], "same": 3, "sandi": 1000, "save_and_plot_cell_width": 59, "scrip": [488, 489], "script": [948, 1017], "sea": [953, 986], "seaice_graph_partit": [490, 491], "seaice_initial_condit": [492, 493], "seaice_mesh": [494, 495], "seaicegraphpartit": [490, 491], "seaiceinitialcondit": [492, 493], "seaicemesh": [494, 495], "select": 0, "serial": [9, 69, 70], "serial_nlat": 1013, "set": [948, 952, 954, 955, 966, 973, 1017], "set_cell_width": 93, "set_cores_per_nod": 67, "set_rectangular_geom_points_and_edg": 94, "set_resourc": 22, "set_up_experi": [261, 262, 263, 325], "setup": [1, 4, 6, 9, 23, 51, 56, 60, 71, 72, 126, 141, 154, 157, 173, 187, 208, 226, 232, 243, 250, 256, 263, 286, 310, 346, 353, 368, 371, 380, 405, 450, 500, 509, 516, 525, 527, 561, 568, 577, 589, 603, 611, 632, 646, 692, 695, 698, 703, 706, 709, 737, 759, 786, 800, 814, 838, 852, 861, 867, 881, 888, 891, 896, 904, 946], "setup_cas": [71, 72], "setup_mesh": [109, 110, 127, 128, 142, 143, 174, 175, 209, 210, 287, 288, 289, 290, 291, 317, 319, 322, 330], "setup_otps2": 853, "setup_suit": 74, "setupexperi": [261, 262, 263], "setupmesh": [109, 110, 127, 128, 142, 143, 174, 175, 209, 210, 287, 288, 314, 316], "share": [1, 7, 947, 978, 998, 1000, 1001, 1004, 1010, 1011, 1014, 1016], "shelf": [339, 986, 998], "shelf_collaps": [251, 252, 253, 254, 255, 256, 324, 972], "shelfcollaps": [251, 252], "shell": 948, "simul": [325, 973, 1004], "slm": [325, 973], "slurm": 984, "smoke_test": [129, 130, 188, 189, 292, 293, 320, 330, 964, 968, 978], "smoketest": [129, 130, 188, 189, 292, 293, 316], "so12to30": [530, 531, 927, 998], 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970], "spinupensembl": [158, 159], "spinuptest": [211, 212], "ssh_adjust": [514, 515, 516, 609, 610, 611, 644, 645, 646, 930, 933], "ssh_from_surface_dens": [517, 518], "sshadjust": [514, 515, 516, 609, 610, 611, 644, 645, 646], "sshfromsurfacedens": [517, 518], "standard": 994, "standard_experi": [144, 145, 146, 147, 148, 317, 965], "standardexperi": [144, 145], "star": 989, "start": [948, 952, 953, 954, 955, 1017], "state": [993, 1000, 1014], "steady_state_drift_test": [213, 214, 322, 970], "steadystatedrifttest": [213, 214], "step": [0, 4, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 338, 927, 946, 952, 954, 955, 966, 973, 994, 997, 998, 1000, 1009, 1010, 1012, 1014], "stratified_seich": [699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 936, 1007], "stratifiedseich": [699, 700], "stream": [339, 946, 954, 955], "streamfunct": [647, 648, 933], "structur": [1, 946], "studi": 952, "style": [947, 948], "subdomain_extractor": [280, 281, 329, 977], "subdomainextractor": 280, "subgrid": [994, 1009], "submiss": 1, "suit": [4, 6, 9, 73, 74, 946, 959, 991, 1017, 1019], "summari": [0, 1, 3], "support": [1, 336, 948, 984, 1017], "surfac": 986, "surface_restor": 1011, "switch": [948, 953], "symlink": [9, 40, 946], "system": 948, "tanh_dz": 989, "task": [296, 297, 298, 330, 542, 927, 952], "templat": [3, 946], "ten_day_test": [624, 625, 932, 1003], "tendaytest": [624, 625], "test": [0, 1, 3, 7, 77, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 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[994, 997, 1009, 1010, 1012], "time_varying_ocean0": 1004, "timer": 9, "timeseries_plot": [412, 748], "timeseriesplott": [664, 665, 666], "topic": 3, "topograph": 1000, "topographi": [339, 988], "topographic_wave_drag": [583, 584, 585, 586, 929], "troubleshoot": [7, 948, 949], "tutori": [951, 952, 953, 954, 955], "type": [926, 989], "understand": 1, "uniform": 989, "uniqu": 0, "unix": 948, "unknown": 948, "up": [948, 954, 955, 966, 973, 1017], "updat": [0, 7, 9, 946, 948, 955], "update_cach": 35, "update_cor": [400, 732, 755], "update_evaporation_flux": 629, "update_namelist_at_runtim": 24, "update_namelist_pio": 25, "update_streams_at_runtim": 26, "us": 0, "user": [1, 948, 951, 956, 1017], "util": [338, 878, 879, 880, 881, 882, 883, 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 944, 1015], "valid": [3, 4, 9, 31, 75, 76, 101, 192, 198, 293, 401, 426, 428, 430, 437, 464, 548, 616, 625, 680, 733, 776, 946, 955], "vari": [954, 955], "variabl": [7, 9], "veri": 953, "version": [0, 951, 1020], "vertic": [339, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 954, 989], "visual": [111, 112, 113, 131, 132, 133, 146, 147, 148, 163, 164, 168, 169, 215, 216, 217, 314, 316, 317, 322, 674, 675, 696, 697, 698, 707, 708, 709, 717, 718, 934, 936, 937], "visualize_circular_shelf": 113, "visualize_dom": 133, "visualize_eismint2": 148, "visualize_hydro_radi": 217, "viz": [395, 396, 408, 409, 410, 411, 412, 420, 421, 438, 439, 612, 613, 626, 627, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 685, 686, 740, 741, 742, 743, 744, 745, 746, 747, 748, 922, 923, 924, 925, 930, 933, 938, 994, 1009], "wave": [1000, 1014], "wc14": [532, 533, 927, 998], "wc14basemesh": [532, 533], "wcwisc14": [927, 998], "we": 7, "what": 948, "when": 949, "where": 7, "whether": 0, "with_frazil": [907, 908, 909, 945, 1016], "withfrazil": [907, 908, 909], "within": [1, 947], "without": 7, "worktre": 948, "write": [68, 355], "write_1d_grid": 911, "write_coeffs_reconstruct": [496, 497], "write_coordinate_fil": 854, "write_to_fil": [582, 586, 872], "writecoeffsreconstruct": [496, 497], "z": 989, "ziso": [338, 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 945, 1016], "ziso_test_cas": 945, "zisotestcas": [898, 899, 900], "zlevel": [915, 916, 917, 918], "zstar": 919}})
\ No newline at end of file
diff --git a/latest/users_guide/landice/test_groups/antarctica.html b/latest/users_guide/landice/test_groups/antarctica.html
index 4ec9072df3..bef6afdf90 100644
--- a/latest/users_guide/landice/test_groups/antarctica.html
+++ b/latest/users_guide/landice/test_groups/antarctica.html
@@ -212,6 +212,18 @@ 
    config options# (default value is for Perlmutter)
 data_path = /global/cfs/cdirs/fanssie/standard_datasets/AIS_datasets
 
+# filename of the BedMachine thickness and bedTopography dataset
+# (default value is for Perlmutter)
+bedmachine_filename = BedMachineAntarctica_2020-07-15_v02_edits_floodFill_extrap_fillVostok.nc
+
+# filename of the MEASURES ice velocity dataset
+# (default value is for Perlmutter)
+measures_filename = antarctica_ice_velocity_450m_v2_edits_extrap.nc
+
+# projection of the source datasets, according to the dictionary keys
+# create_SCRIP_file_from_planar_rectangular_grid.py from MPAS_Tools
+src_proj = ais-bedmap2
+
 # number of processors to use for ESMF_RegridWeightGen
 nProcs = 128
 
    • 
diff --git a/latest/users_guide/landice/test_groups/greenland.html b/latest/users_guide/landice/test_groups/greenland.html
index dbeacee8e1..7facb06917 100644
--- a/latest/users_guide/landice/test_groups/greenland.html
+++ b/latest/users_guide/landice/test_groups/greenland.html
@@ -224,6 +224,26 @@ 
    config optionsuse_dist_to_grounding_line = False
 use_dist_to_edge = True
 use_bed = True
+
+[greenland]
+# path to directory containing BedMachine and Measures datasets
+# (default value is for Perlmutter)
+data_path = /global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/
+
+# filename of the BedMachine thickness and bedTopography dataset
+# (default value is for Perlmutter)
+bedmachine_filename = BedMachineGreenland-v5_edits_floodFill_extrap.nc
+
+# filename of the MEASURES ice velocity dataset
+# (default value is for Perlmutter)
+measures_filename = greenland_vel_mosaic500_extrap.nc
+
+# projection of the source datasets, according to the dictionary keys
+# create_SCRIP_file_from_planar_rectangular_grid.py from MPAS_Tools
+src_proj = gis-gimp
+
+# number of processors to use for ESMF_RegridWeightGen
+nProcs = 128