diff --git a/share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..4b8d692024 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,1039 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 508. +# The second label can be omitted should the issue be resolved in the future. + +508 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_Striate_1 +2 17Networks_LH_VisCent_Striate_2 +3 17Networks_LH_VisCent_Striate_3 +4 17Networks_LH_VisCent_Striate_4 +5 17Networks_LH_VisCent_ExStr_1 +6 17Networks_LH_VisCent_ExStr_2 +7 17Networks_LH_VisCent_ExStr_3 +8 17Networks_LH_VisCent_ExStr_4 +9 17Networks_LH_VisCent_ExStr_5 +10 17Networks_LH_VisCent_ExStr_6 +11 17Networks_LH_VisCent_ExStr_7 +12 17Networks_LH_VisCent_ExStr_8 +13 17Networks_LH_VisCent_ExStr_9 +14 17Networks_LH_VisCent_ExStr_10 +15 17Networks_LH_VisCent_ExStr_11 +16 17Networks_LH_VisCent_ExStr_12 +17 17Networks_LH_VisCent_ExStr_13 +18 17Networks_LH_VisCent_ExStr_14 +19 17Networks_LH_VisCent_ExStr_15 +20 17Networks_LH_VisCent_ExStr_16 +21 17Networks_LH_VisCent_ExStr_17 +22 17Networks_LH_VisCent_ExStr_18 +23 17Networks_LH_VisCent_ExStr_19 +24 17Networks_LH_VisCent_ExStr_20 +25 17Networks_LH_VisCent_ExStr_21 +26 17Networks_LH_VisCent_ExStr_22 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b/share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..fbef4b145d --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,1040 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 508. +# The second label can be omitted should the issue be resolved in the future. + +508 Left-Accumbens-a + +0 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7Networks_RH_Default_PFCdPFCm_6 +978 7Networks_RH_Default_PFCdPFCm_7 +979 7Networks_RH_Default_PFCdPFCm_8 +980 7Networks_RH_Default_PFCdPFCm_9 +981 7Networks_RH_Default_PFCdPFCm_10 +982 7Networks_RH_Default_PFCdPFCm_11 +983 7Networks_RH_Default_PFCdPFCm_12 +984 7Networks_RH_Default_PFCdPFCm_13 +985 7Networks_RH_Default_PFCdPFCm_14 +986 7Networks_RH_Default_PFCdPFCm_15 +987 7Networks_RH_Default_PFCdPFCm_16 +988 7Networks_RH_Default_PFCdPFCm_17 +989 7Networks_RH_Default_PFCdPFCm_18 +990 7Networks_RH_Default_PFCdPFCm_19 +991 7Networks_RH_Default_PFCdPFCm_20 +992 7Networks_RH_Default_PFCdPFCm_21 +993 7Networks_RH_Default_PFCdPFCm_22 +994 7Networks_RH_Default_PFCdPFCm_23 +995 7Networks_RH_Default_PFCdPFCm_24 +996 7Networks_RH_Default_pCunPCC_1 +997 7Networks_RH_Default_pCunPCC_2 +998 7Networks_RH_Default_pCunPCC_3 +999 7Networks_RH_Default_pCunPCC_4 +1000 7Networks_RH_Default_pCunPCC_5 +1001 7Networks_RH_Default_pCunPCC_6 +1002 7Networks_RH_Default_pCunPCC_7 +1003 7Networks_RH_Default_pCunPCC_8 +1004 7Networks_RH_Default_pCunPCC_9 +1005 7Networks_RH_Default_pCunPCC_10 +1006 7Networks_RH_Default_pCunPCC_11 +1007 7Networks_RH_Default_pCunPCC_12 +1008 7Networks_RH_Default_pCunPCC_13 +1009 7Networks_RH_Default_pCunPCC_14 +1010 7Networks_RH_Default_pCunPCC_15 +1011 7Networks_RH_Default_pCunPCC_16 +1012 7Networks_RH_Default_pCunPCC_17 +1013 7Networks_RH_Default_pCunPCC_18 +1014 7Networks_RH_Cont_pCun_2 +1015 7Networks_RH_Cont_pCun_4 + +1016 Right-Cerebellum-Cortex + diff --git a/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..c4e58b205c --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,140 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 58. +# The second label can be omitted should the issue be resolved in the future. + +58 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_ExStr_1 +2 17Networks_LH_VisCent_ExStr_2 +3 17Networks_LH_VisCent_Striate_1 +4 17Networks_LH_VisCent_ExStr_3 +5 17Networks_LH_VisPeri_ExStrInf_1 +6 17Networks_LH_VisPeri_StriCal_1 +7 17Networks_LH_VisPeri_ExStrSup_1 +8 17Networks_LH_SomMotA_1 +9 17Networks_LH_SomMotA_2 +10 17Networks_LH_SomMotB_Aud_1 +11 17Networks_LH_SomMotB_S2_1 +12 17Networks_LH_SomMotB_S2_2 +13 17Networks_LH_SomMotB_Cent_1 +14 17Networks_LH_DorsAttnA_TempOcc_1 +15 17Networks_LH_DorsAttnA_ParOcc_1 +16 17Networks_LH_DorsAttnA_SPL_1 +17 17Networks_LH_DorsAttnB_PostC_1 +18 17Networks_LH_DorsAttnB_PostC_2 +19 17Networks_LH_DorsAttnB_PostC_3 +20 17Networks_LH_DorsAttnB_FEF_1 +21 17Networks_LH_SalVentAttnA_ParOper_1 +22 17Networks_LH_SalVentAttnA_Ins_1 +23 17Networks_LH_SalVentAttnA_Ins_2 +24 17Networks_LH_SalVentAttnA_ParMed_1 +25 17Networks_LH_SalVentAttnA_FrMed_1 +26 17Networks_LH_SalVentAttnB_PFCl_1 +27 17Networks_LH_SalVentAttnB_PFCmp_1 +28 17Networks_LH_LimbicB_OFC_1 +29 17Networks_LH_LimbicA_TempPole_1 +30 17Networks_LH_LimbicA_TempPole_2 +31 17Networks_LH_ContA_IPS_1 +32 17Networks_LH_ContA_PFCl_1 +33 17Networks_LH_ContA_PFCl_2 +34 17Networks_LH_ContB_PFClv_1 +35 17Networks_LH_ContC_pCun_1 +36 17Networks_LH_ContC_pCun_2 +37 17Networks_LH_ContC_Cingp_1 +38 17Networks_LH_DefaultA_PFCd_1 +39 17Networks_LH_DefaultA_pCunPCC_1 +40 17Networks_LH_DefaultA_PFCm_1 +41 17Networks_LH_DefaultB_Temp_1 +42 17Networks_LH_DefaultB_Temp_2 +43 17Networks_LH_DefaultB_IPL_1 +44 17Networks_LH_DefaultB_PFCd_1 +45 17Networks_LH_DefaultB_PFCl_1 +46 17Networks_LH_DefaultB_PFCv_1 +47 17Networks_LH_DefaultB_PFCv_2 +48 17Networks_LH_DefaultC_Rsp_1 +49 17Networks_LH_DefaultC_PHC_1 +50 17Networks_LH_TempPar_1 + +51 Left-Cerebellum-Cortex + +52 Left-Thalamus-Proper +53 Left-Caudate +54 Left-Putamen +55 Left-Pallidum +56 Left-Hippocampus +57 Left-Amygdala +58 Left-Accumbens-area + +59 Right-Thalamus-Proper +60 Right-Caudate +61 Right-Putamen +62 Right-Pallidum +63 Right-Hippocampus +64 Right-Amygdala +65 Right-Accumbens-area + +66 17Networks_RH_VisCent_ExStr_1 +67 17Networks_RH_VisCent_ExStr_2 +68 17Networks_RH_VisCent_ExStr_3 +69 17Networks_RH_VisPeri_StriCal_1 +70 17Networks_RH_VisPeri_ExStrInf_1 +71 17Networks_RH_VisPeri_ExStrSup_1 +72 17Networks_RH_SomMotA_1 +73 17Networks_RH_SomMotA_2 +74 17Networks_RH_SomMotA_3 +75 17Networks_RH_SomMotA_4 +76 17Networks_RH_SomMotB_Aud_1 +77 17Networks_RH_SomMotB_S2_1 +78 17Networks_RH_SomMotB_S2_2 +79 17Networks_RH_SomMotB_Cent_1 +80 17Networks_RH_DorsAttnA_TempOcc_1 +81 17Networks_RH_DorsAttnA_ParOcc_1 +82 17Networks_RH_DorsAttnA_SPL_1 +83 17Networks_RH_DorsAttnB_PostC_1 +84 17Networks_RH_DorsAttnB_PostC_2 +85 17Networks_RH_DorsAttnB_FEF_1 +86 17Networks_RH_SalVentAttnA_ParOper_1 +87 17Networks_RH_SalVentAttnA_Ins_1 +88 17Networks_RH_SalVentAttnA_ParMed_1 +89 17Networks_RH_SalVentAttnA_FrMed_1 +90 17Networks_RH_SalVentAttnB_IPL_1 +91 17Networks_RH_SalVentAttnB_PFCl_1 +92 17Networks_RH_SalVentAttnB_PFCmp_1 +93 17Networks_RH_LimbicB_OFC_1 +94 17Networks_RH_LimbicA_TempPole_1 +95 17Networks_RH_ContA_IPS_1 +96 17Networks_RH_ContA_PFCl_1 +97 17Networks_RH_ContA_PFCl_2 +98 17Networks_RH_ContB_Temp_1 +99 17Networks_RH_ContB_IPL_1 +100 17Networks_RH_ContB_PFCld_1 +101 17Networks_RH_ContB_PFClv_1 +102 17Networks_RH_ContC_Cingp_1 +103 17Networks_RH_ContC_pCun_1 +104 17Networks_RH_DefaultA_IPL_1 +105 17Networks_RH_DefaultA_PFCd_1 +106 17Networks_RH_DefaultA_pCunPCC_1 +107 17Networks_RH_DefaultA_PFCm_1 +108 17Networks_RH_DefaultB_PFCd_1 +109 17Networks_RH_DefaultB_PFCv_1 +110 17Networks_RH_DefaultB_PFCv_2 +111 17Networks_RH_DefaultC_Rsp_1 +112 17Networks_RH_DefaultC_PHC_1 +113 17Networks_RH_TempPar_1 +114 17Networks_RH_TempPar_2 +115 17Networks_RH_TempPar_3 + +116 Right-Cerebellum-Cortex + diff --git a/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..bf58c3b712 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_100Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,139 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 58. +# The second label can be omitted should the issue be resolved in the future. + +58 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_SomMot_1 +11 7Networks_LH_SomMot_2 +12 7Networks_LH_SomMot_3 +13 7Networks_LH_SomMot_4 +14 7Networks_LH_SomMot_5 +15 7Networks_LH_SomMot_6 +16 7Networks_LH_DorsAttn_Post_1 +17 7Networks_LH_DorsAttn_Post_2 +18 7Networks_LH_DorsAttn_Post_3 +19 7Networks_LH_DorsAttn_Post_4 +20 7Networks_LH_DorsAttn_Post_5 +21 7Networks_LH_DorsAttn_Post_6 +22 7Networks_LH_DorsAttn_PrCv_1 +23 7Networks_LH_DorsAttn_FEF_1 +24 7Networks_LH_SalVentAttn_ParOper_1 +25 7Networks_LH_SalVentAttn_FrOperIns_1 +26 7Networks_LH_SalVentAttn_FrOperIns_2 +27 7Networks_LH_SalVentAttn_PFCl_1 +28 7Networks_LH_SalVentAttn_Med_1 +29 7Networks_LH_SalVentAttn_Med_2 +30 7Networks_LH_SalVentAttn_Med_3 +31 7Networks_LH_Limbic_OFC_1 +32 7Networks_LH_Limbic_TempPole_1 +33 7Networks_LH_Limbic_TempPole_2 +34 7Networks_LH_Cont_Par_1 +35 7Networks_LH_Cont_PFCl_1 +36 7Networks_LH_Cont_pCun_1 +37 7Networks_LH_Cont_Cing_1 +38 7Networks_LH_Default_Temp_1 +39 7Networks_LH_Default_Temp_2 +40 7Networks_LH_Default_Par_1 +41 7Networks_LH_Default_Par_2 +42 7Networks_LH_Default_PFC_1 +43 7Networks_LH_Default_PFC_2 +44 7Networks_LH_Default_PFC_3 +45 7Networks_LH_Default_PFC_4 +46 7Networks_LH_Default_PFC_5 +47 7Networks_LH_Default_PFC_6 +48 7Networks_LH_Default_PFC_7 +49 7Networks_LH_Default_pCunPCC_1 +50 7Networks_LH_Default_pCunPCC_2 + +51 Left-Cerebellum-Cortex + +52 Left-Thalamus-Proper +53 Left-Caudate +54 Left-Putamen +55 Left-Pallidum +56 Left-Hippocampus +57 Left-Amygdala +58 Left-Accumbens-area + +59 Right-Thalamus-Proper +60 Right-Caudate +61 Right-Putamen +62 Right-Pallidum +63 Right-Hippocampus +64 Right-Amygdala +65 Right-Accumbens-area + +66 7Networks_RH_Vis_1 +67 7Networks_RH_Vis_2 +68 7Networks_RH_Vis_3 +69 7Networks_RH_Vis_4 +70 7Networks_RH_Vis_5 +71 7Networks_RH_Vis_6 +72 7Networks_RH_Vis_7 +73 7Networks_RH_Vis_8 +74 7Networks_RH_SomMot_1 +75 7Networks_RH_SomMot_2 +76 7Networks_RH_SomMot_3 +77 7Networks_RH_SomMot_4 +78 7Networks_RH_SomMot_5 +79 7Networks_RH_SomMot_6 +80 7Networks_RH_SomMot_7 +81 7Networks_RH_SomMot_8 +82 7Networks_RH_DorsAttn_Post_1 +83 7Networks_RH_DorsAttn_Post_2 +84 7Networks_RH_DorsAttn_Post_3 +85 7Networks_RH_DorsAttn_Post_4 +86 7Networks_RH_DorsAttn_Post_5 +87 7Networks_RH_DorsAttn_PrCv_1 +88 7Networks_RH_DorsAttn_FEF_1 +89 7Networks_RH_SalVentAttn_TempOccPar_1 +90 7Networks_RH_SalVentAttn_TempOccPar_2 +91 7Networks_RH_SalVentAttn_FrOperIns_1 +92 7Networks_RH_SalVentAttn_Med_1 +93 7Networks_RH_SalVentAttn_Med_2 +94 7Networks_RH_Limbic_OFC_1 +95 7Networks_RH_Limbic_TempPole_1 +96 7Networks_RH_Cont_Par_1 +97 7Networks_RH_Cont_Par_2 +98 7Networks_RH_Cont_PFCl_1 +99 7Networks_RH_Cont_PFCl_2 +100 7Networks_RH_Cont_PFCl_3 +101 7Networks_RH_Cont_PFCl_4 +102 7Networks_RH_Cont_Cing_1 +103 7Networks_RH_Cont_PFCmp_1 +104 7Networks_RH_Cont_pCun_1 +105 7Networks_RH_Default_Par_1 +106 7Networks_RH_Default_Temp_1 +107 7Networks_RH_Default_Temp_2 +108 7Networks_RH_Default_Temp_3 +109 7Networks_RH_Default_PFCv_1 +110 7Networks_RH_Default_PFCv_2 +111 7Networks_RH_Default_PFCdPFCm_1 +112 7Networks_RH_Default_PFCdPFCm_2 +113 7Networks_RH_Default_PFCdPFCm_3 +114 7Networks_RH_Default_pCunPCC_1 +115 7Networks_RH_Default_pCunPCC_2 + +116 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..7a7c24dae4 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,339 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 158. +# The second label can be omitted should the issue be resolved in the future. + +158 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_ExStr_1 +2 17Networks_LH_VisCent_ExStr_2 +3 17Networks_LH_VisCent_ExStr_3 +4 17Networks_LH_VisCent_ExStr_4 +5 17Networks_LH_VisCent_ExStr_5 +6 17Networks_LH_VisCent_ExStr_6 +7 17Networks_LH_VisCent_Striate_1 +8 17Networks_LH_VisCent_ExStr_7 +9 17Networks_LH_VisCent_ExStr_8 +10 17Networks_LH_VisCent_ExStr_9 +11 17Networks_LH_VisCent_ExStr_10 +12 17Networks_LH_VisPeri_ExStrInf_1 +13 17Networks_LH_VisPeri_ExStrInf_2 +14 17Networks_LH_VisPeri_ExStrInf_3 +15 17Networks_LH_VisPeri_ExStrInf_4 +16 17Networks_LH_VisPeri_StriCal_1 +17 17Networks_LH_VisPeri_ExStrSup_1 +18 17Networks_LH_VisPeri_ExStrSup_2 +19 17Networks_LH_VisPeri_ExStrSup_3 +20 17Networks_LH_VisPeri_ExStrSup_4 +21 17Networks_LH_SomMotA_1 +22 17Networks_LH_SomMotA_2 +23 17Networks_LH_SomMotA_3 +24 17Networks_LH_SomMotA_4 +25 17Networks_LH_SomMotA_5 +26 17Networks_LH_SomMotA_6 +27 17Networks_LH_SomMotA_7 +28 17Networks_LH_SomMotA_8 +29 17Networks_LH_SomMotA_9 +30 17Networks_LH_SomMotA_10 +31 17Networks_LH_SomMotA_11 +32 17Networks_LH_SomMotA_12 +33 17Networks_LH_SomMotA_13 +34 17Networks_LH_SomMotA_14 +35 17Networks_LH_SomMotA_15 +36 17Networks_LH_SomMotB_Aud_1 +37 17Networks_LH_SomMotB_Aud_2 +38 17Networks_LH_SomMotB_S2_1 +39 17Networks_LH_SomMotB_S2_2 +40 17Networks_LH_SomMotB_S2_3 +41 17Networks_LH_SomMotB_Aud_3 +42 17Networks_LH_SomMotB_S2_4 +43 17Networks_LH_SomMotB_S2_5 +44 17Networks_LH_SomMotB_S2_6 +45 17Networks_LH_SomMotB_Cent_1 +46 17Networks_LH_SomMotB_Cent_2 +47 17Networks_LH_SomMotB_Cent_3 +48 17Networks_LH_DorsAttnA_TempOcc_1 +49 17Networks_LH_DorsAttnA_TempOcc_2 +50 17Networks_LH_DorsAttnA_TempOcc_3 +51 17Networks_LH_DorsAttnA_ParOcc_1 +52 17Networks_LH_DorsAttnA_SPL_1 +53 17Networks_LH_DorsAttnA_SPL_2 +54 17Networks_LH_DorsAttnA_SPL_3 +55 17Networks_LH_DorsAttnA_SPL_4 +56 17Networks_LH_DorsAttnB_TempOcc_1 +57 17Networks_LH_DorsAttnB_PostC_1 +58 17Networks_LH_DorsAttnB_PostC_2 +59 17Networks_LH_DorsAttnB_PostC_3 +60 17Networks_LH_DorsAttnB_PostC_4 +61 17Networks_LH_DorsAttnB_PostC_5 +62 17Networks_LH_DorsAttnB_FEF_1 +63 17Networks_LH_DorsAttnB_FEF_2 +64 17Networks_LH_SalVentAttnA_ParOper_1 +65 17Networks_LH_SalVentAttnA_ParOper_2 +66 17Networks_LH_SalVentAttnA_Ins_1 +67 17Networks_LH_SalVentAttnA_Ins_2 +68 17Networks_LH_SalVentAttnA_Ins_3 +69 17Networks_LH_SalVentAttnA_FrOper_1 +70 17Networks_LH_SalVentAttnA_ParMed_1 +71 17Networks_LH_SalVentAttnA_ParMed_2 +72 17Networks_LH_SalVentAttnA_FrMed_1 +73 17Networks_LH_SalVentAttnA_FrMed_2 +74 17Networks_LH_SalVentAttnB_IPL_1 +75 17Networks_LH_SalVentAttnB_PFCl_1 +76 17Networks_LH_SalVentAttnB_PFCl_2 +77 17Networks_LH_SalVentAttnB_Ins_1 +78 17Networks_LH_SalVentAttnB_Ins_2 +79 17Networks_LH_SalVentAttnB_PFCmp_1 +80 17Networks_LH_LimbicB_OFC_1 +81 17Networks_LH_LimbicB_OFC_2 +82 17Networks_LH_LimbicB_OFC_3 +83 17Networks_LH_LimbicB_OFC_4 +84 17Networks_LH_LimbicA_TempPole_1 +85 17Networks_LH_LimbicA_TempPole_2 +86 17Networks_LH_LimbicA_TempPole_3 +87 17Networks_LH_LimbicA_TempPole_4 +88 17Networks_LH_LimbicA_TempPole_5 +89 17Networks_LH_ContA_Temp_1 +90 17Networks_LH_ContA_IPS_1 +91 17Networks_LH_ContA_IPS_2 +92 17Networks_LH_ContA_IPS_3 +93 17Networks_LH_ContA_IPS_4 +94 17Networks_LH_ContA_PFCd_1 +95 17Networks_LH_ContA_PFClv_1 +96 17Networks_LH_ContA_PFCl_1 +97 17Networks_LH_ContA_PFCl_2 +98 17Networks_LH_ContA_PFCl_3 +99 17Networks_LH_ContA_PFCl_4 +100 17Networks_LH_ContA_Cingm_1 +101 17Networks_LH_ContB_Temp_1 +102 17Networks_LH_ContB_IPL_1 +103 17Networks_LH_ContB_IPL_2 +104 17Networks_LH_ContB_PFClv_1 +105 17Networks_LH_ContB_PFClv_2 +106 17Networks_LH_ContB_PFCmp_1 +107 17Networks_LH_ContC_pCun_1 +108 17Networks_LH_ContC_pCun_2 +109 17Networks_LH_ContC_pCun_3 +110 17Networks_LH_ContC_Cingp_1 +111 17Networks_LH_DefaultA_IPL_1 +112 17Networks_LH_DefaultA_PFCd_1 +113 17Networks_LH_DefaultA_PFCd_2 +114 17Networks_LH_DefaultA_pCunPCC_1 +115 17Networks_LH_DefaultA_pCunPCC_2 +116 17Networks_LH_DefaultA_pCunPCC_3 +117 17Networks_LH_DefaultA_pCunPCC_4 +118 17Networks_LH_DefaultA_pCunPCC_5 +119 17Networks_LH_DefaultA_PFCm_1 +120 17Networks_LH_DefaultA_PFCm_2 +121 17Networks_LH_DefaultA_PFCm_3 +122 17Networks_LH_DefaultB_Temp_1 +123 17Networks_LH_DefaultB_Temp_2 +124 17Networks_LH_DefaultB_Temp_3 +125 17Networks_LH_DefaultB_Temp_4 +126 17Networks_LH_DefaultB_IPL_1 +127 17Networks_LH_DefaultB_IPL_2 +128 17Networks_LH_DefaultB_PFCd_1 +129 17Networks_LH_DefaultB_PFCd_2 +130 17Networks_LH_DefaultB_PFCd_3 +131 17Networks_LH_DefaultB_PFCd_4 +132 17Networks_LH_DefaultB_PFCd_5 +133 17Networks_LH_DefaultB_PFCl_1 +134 17Networks_LH_DefaultB_PFCl_2 +135 17Networks_LH_DefaultB_PFCv_1 +136 17Networks_LH_DefaultB_PFCv_2 +137 17Networks_LH_DefaultB_PFCv_3 +138 17Networks_LH_DefaultB_PFCv_4 +139 17Networks_LH_DefaultB_PFCv_5 +140 17Networks_LH_DefaultC_IPL_1 +141 17Networks_LH_DefaultC_Rsp_1 +142 17Networks_LH_DefaultC_Rsp_2 +143 17Networks_LH_DefaultC_PHC_1 +144 17Networks_LH_DefaultC_PHC_2 +145 17Networks_LH_DefaultC_PHC_3 +146 17Networks_LH_TempPar_1 +147 17Networks_LH_TempPar_2 +148 17Networks_LH_TempPar_3 +149 17Networks_LH_TempPar_4 +150 17Networks_LH_TempPar_5 + +151 Left-Cerebellum-Cortex + +152 Left-Thalamus-Proper +153 Left-Caudate +154 Left-Putamen +155 Left-Pallidum +156 Left-Hippocampus +157 Left-Amygdala +158 Left-Accumbens-area + +159 Right-Thalamus-Proper +160 Right-Caudate +161 Right-Putamen +162 Right-Pallidum +163 Right-Hippocampus +164 Right-Amygdala +165 Right-Accumbens-area + +166 17Networks_RH_VisCent_ExStr_1 +167 17Networks_RH_VisCent_ExStr_2 +168 17Networks_RH_VisCent_ExStr_3 +169 17Networks_RH_VisCent_ExStr_4 +170 17Networks_RH_VisCent_ExStr_5 +171 17Networks_RH_VisCent_ExStr_6 +172 17Networks_RH_VisCent_Striate_1 +173 17Networks_RH_VisCent_ExStr_7 +174 17Networks_RH_VisCent_ExStr_8 +175 17Networks_RH_VisCent_ExStr_9 +176 17Networks_RH_VisCent_ExStr_10 +177 17Networks_RH_VisPeri_ExStrInf_1 +178 17Networks_RH_VisPeri_ExStrInf_2 +179 17Networks_RH_VisPeri_ExStrInf_3 +180 17Networks_RH_VisPeri_ExStrInf_4 +181 17Networks_RH_VisPeri_StriCal_1 +182 17Networks_RH_VisPeri_StriCal_2 +183 17Networks_RH_VisPeri_ExStrSup_1 +184 17Networks_RH_VisPeri_ExStrSup_2 +185 17Networks_RH_VisPeri_ExStrSup_3 +186 17Networks_RH_SomMotA_1 +187 17Networks_RH_SomMotA_2 +188 17Networks_RH_SomMotA_3 +189 17Networks_RH_SomMotA_4 +190 17Networks_RH_SomMotA_5 +191 17Networks_RH_SomMotA_6 +192 17Networks_RH_SomMotA_7 +193 17Networks_RH_SomMotA_8 +194 17Networks_RH_SomMotA_9 +195 17Networks_RH_SomMotA_10 +196 17Networks_RH_SomMotA_11 +197 17Networks_RH_SomMotA_12 +198 17Networks_RH_SomMotA_13 +199 17Networks_RH_SomMotA_14 +200 17Networks_RH_SomMotA_15 +201 17Networks_RH_SomMotB_Aud_1 +202 17Networks_RH_SomMotB_S2_1 +203 17Networks_RH_SomMotB_S2_2 +204 17Networks_RH_SomMotB_Aud_2 +205 17Networks_RH_SomMotB_S2_3 +206 17Networks_RH_SomMotB_S2_4 +207 17Networks_RH_SomMotB_S2_5 +208 17Networks_RH_SomMotB_Cent_1 +209 17Networks_RH_SomMotB_Cent_2 +210 17Networks_RH_DorsAttnA_TempOcc_1 +211 17Networks_RH_DorsAttnA_ParOcc_1 +212 17Networks_RH_DorsAttnA_ParOcc_2 +213 17Networks_RH_DorsAttnA_ParOcc_3 +214 17Networks_RH_DorsAttnA_SPL_1 +215 17Networks_RH_DorsAttnA_SPL_2 +216 17Networks_RH_DorsAttnA_SPL_3 +217 17Networks_RH_DorsAttnA_SPL_4 +218 17Networks_RH_DorsAttnB_PostC_1 +219 17Networks_RH_DorsAttnB_PostC_2 +220 17Networks_RH_DorsAttnB_PostC_3 +221 17Networks_RH_DorsAttnB_PostC_4 +222 17Networks_RH_DorsAttnB_PostC_5 +223 17Networks_RH_DorsAttnB_PostC_6 +224 17Networks_RH_DorsAttnB_FEF_1 +225 17Networks_RH_DorsAttnB_FEF_2 +226 17Networks_RH_SalVentAttnA_ParOper_1 +227 17Networks_RH_SalVentAttnA_ParOper_2 +228 17Networks_RH_SalVentAttnA_ParOper_3 +229 17Networks_RH_SalVentAttnA_ParOper_4 +230 17Networks_RH_SalVentAttnA_PrC_1 +231 17Networks_RH_SalVentAttnA_Ins_1 +232 17Networks_RH_SalVentAttnA_Ins_2 +233 17Networks_RH_SalVentAttnA_Ins_3 +234 17Networks_RH_SalVentAttnA_FrOper_1 +235 17Networks_RH_SalVentAttnA_FrMed_1 +236 17Networks_RH_SalVentAttnA_ParMed_1 +237 17Networks_RH_SalVentAttnA_ParMed_2 +238 17Networks_RH_SalVentAttnA_ParMed_3 +239 17Networks_RH_SalVentAttnA_FrMed_2 +240 17Networks_RH_SalVentAttnA_FrMed_3 +241 17Networks_RH_SalVentAttnB_IPL_1 +242 17Networks_RH_SalVentAttnB_PFClv_1 +243 17Networks_RH_SalVentAttnB_PFCl_1 +244 17Networks_RH_SalVentAttnB_PFCl_2 +245 17Networks_RH_SalVentAttnB_Ins_1 +246 17Networks_RH_SalVentAttnB_Ins_2 +247 17Networks_RH_SalVentAttnB_PFCmp_1 +248 17Networks_RH_SalVentAttnB_PFCmp_2 +249 17Networks_RH_LimbicB_OFC_1 +250 17Networks_RH_LimbicB_OFC_2 +251 17Networks_RH_LimbicB_OFC_3 +252 17Networks_RH_LimbicB_OFC_4 +253 17Networks_RH_LimbicB_OFC_5 +254 17Networks_RH_LimbicA_TempPole_1 +255 17Networks_RH_LimbicA_TempPole_2 +256 17Networks_RH_LimbicA_TempPole_3 +257 17Networks_RH_LimbicA_TempPole_4 +258 17Networks_RH_LimbicA_TempPole_5 +259 17Networks_RH_LimbicA_TempPole_6 +260 17Networks_RH_ContA_Temp_1 +261 17Networks_RH_ContA_IPS_1 +262 17Networks_RH_ContA_IPS_2 +263 17Networks_RH_ContA_IPS_3 +264 17Networks_RH_ContA_PFCd_1 +265 17Networks_RH_ContA_PFCl_1 +266 17Networks_RH_ContA_PFCl_2 +267 17Networks_RH_ContA_PFCl_3 +268 17Networks_RH_ContA_PFCl_4 +269 17Networks_RH_ContA_Cingm_1 +270 17Networks_RH_ContB_Temp_1 +271 17Networks_RH_ContB_IPL_1 +272 17Networks_RH_ContB_IPL_2 +273 17Networks_RH_ContB_IPL_3 +274 17Networks_RH_ContB_PFCld_1 +275 17Networks_RH_ContB_PFCld_2 +276 17Networks_RH_ContB_PFCld_3 +277 17Networks_RH_ContB_PFClv_1 +278 17Networks_RH_ContB_PFClv_2 +279 17Networks_RH_ContB_PFClv_3 +280 17Networks_RH_ContB_PFClv_4 +281 17Networks_RH_ContB_PFCmp_1 +282 17Networks_RH_ContC_pCun_1 +283 17Networks_RH_ContC_pCun_2 +284 17Networks_RH_ContC_pCun_3 +285 17Networks_RH_ContC_Cingp_1 +286 17Networks_RH_DefaultA_Temp_1 +287 17Networks_RH_DefaultA_IPL_1 +288 17Networks_RH_DefaultA_IPL_2 +289 17Networks_RH_DefaultA_PFCd_1 +290 17Networks_RH_DefaultA_pCunPCC_1 +291 17Networks_RH_DefaultA_pCunPCC_2 +292 17Networks_RH_DefaultA_pCunPCC_3 +293 17Networks_RH_DefaultA_PFCm_1 +294 17Networks_RH_DefaultA_PFCm_2 +295 17Networks_RH_DefaultA_PFCm_3 +296 17Networks_RH_DefaultA_PFCm_4 +297 17Networks_RH_DefaultA_PFCm_5 +298 17Networks_RH_DefaultB_Temp_1 +299 17Networks_RH_DefaultB_AntTemp_1 +300 17Networks_RH_DefaultB_PFCd_1 +301 17Networks_RH_DefaultB_PFCd_2 +302 17Networks_RH_DefaultB_PFCv_1 +303 17Networks_RH_DefaultB_PFCv_2 +304 17Networks_RH_DefaultB_PFCv_3 +305 17Networks_RH_DefaultC_IPL_1 +306 17Networks_RH_DefaultC_Rsp_1 +307 17Networks_RH_DefaultC_Rsp_2 +308 17Networks_RH_DefaultC_PHC_1 +309 17Networks_RH_TempPar_1 +310 17Networks_RH_TempPar_2 +311 17Networks_RH_TempPar_3 +312 17Networks_RH_TempPar_4 +313 17Networks_RH_TempPar_5 +314 17Networks_RH_TempPar_6 +315 17Networks_RH_TempPar_7 + +316 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..0592607f3d --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_300Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,339 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 158. +# The second label can be omitted should the issue be resolved in the future. + +158 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 7Networks_LH_Vis_22 +23 7Networks_LH_Vis_23 +24 7Networks_LH_Vis_24 +25 7Networks_LH_SomMot_1 +26 7Networks_LH_SomMot_2 +27 7Networks_LH_SomMot_3 +28 7Networks_LH_SomMot_4 +29 7Networks_LH_SomMot_5 +30 7Networks_LH_SomMot_6 +31 7Networks_LH_SomMot_7 +32 7Networks_LH_SomMot_8 +33 7Networks_LH_SomMot_9 +34 7Networks_LH_SomMot_10 +35 7Networks_LH_SomMot_11 +36 7Networks_LH_SomMot_12 +37 7Networks_LH_SomMot_13 +38 7Networks_LH_SomMot_14 +39 7Networks_LH_SomMot_15 +40 7Networks_LH_SomMot_16 +41 7Networks_LH_SomMot_17 +42 7Networks_LH_SomMot_18 +43 7Networks_LH_SomMot_19 +44 7Networks_LH_SomMot_20 +45 7Networks_LH_SomMot_21 +46 7Networks_LH_SomMot_22 +47 7Networks_LH_SomMot_23 +48 7Networks_LH_SomMot_24 +49 7Networks_LH_SomMot_25 +50 7Networks_LH_SomMot_26 +51 7Networks_LH_SomMot_27 +52 7Networks_LH_SomMot_28 +53 7Networks_LH_SomMot_29 +54 7Networks_LH_DorsAttn_Post_1 +55 7Networks_LH_DorsAttn_Post_2 +56 7Networks_LH_DorsAttn_Post_3 +57 7Networks_LH_DorsAttn_Post_4 +58 7Networks_LH_DorsAttn_Post_5 +59 7Networks_LH_DorsAttn_Post_6 +60 7Networks_LH_DorsAttn_Post_7 +61 7Networks_LH_DorsAttn_Post_8 +62 7Networks_LH_DorsAttn_Post_9 +63 7Networks_LH_DorsAttn_Post_10 +64 7Networks_LH_DorsAttn_Post_11 +65 7Networks_LH_DorsAttn_Post_12 +66 7Networks_LH_DorsAttn_FEF_1 +67 7Networks_LH_DorsAttn_FEF_2 +68 7Networks_LH_DorsAttn_FEF_3 +69 7Networks_LH_DorsAttn_PrCv_1 +70 7Networks_LH_SalVentAttn_ParOper_1 +71 7Networks_LH_SalVentAttn_ParOper_2 +72 7Networks_LH_SalVentAttn_ParOper_3 +73 7Networks_LH_SalVentAttn_TempOcc_1 +74 7Networks_LH_SalVentAttn_FrOperIns_1 +75 7Networks_LH_SalVentAttn_FrOperIns_2 +76 7Networks_LH_SalVentAttn_FrOperIns_3 +77 7Networks_LH_SalVentAttn_FrOperIns_4 +78 7Networks_LH_SalVentAttn_FrOperIns_5 +79 7Networks_LH_SalVentAttn_FrOperIns_6 +80 7Networks_LH_SalVentAttn_FrOperIns_7 +81 7Networks_LH_SalVentAttn_PFCl_1 +82 7Networks_LH_SalVentAttn_Med_1 +83 7Networks_LH_SalVentAttn_Med_2 +84 7Networks_LH_SalVentAttn_Med_3 +85 7Networks_LH_SalVentAttn_Med_4 +86 7Networks_LH_Limbic_OFC_1 +87 7Networks_LH_Limbic_OFC_2 +88 7Networks_LH_Limbic_OFC_3 +89 7Networks_LH_Limbic_TempPole_1 +90 7Networks_LH_Limbic_TempPole_2 +91 7Networks_LH_Limbic_TempPole_3 +92 7Networks_LH_Limbic_TempPole_4 +93 7Networks_LH_Limbic_TempPole_5 +94 7Networks_LH_Limbic_TempPole_6 +95 7Networks_LH_Limbic_TempPole_7 +96 7Networks_LH_Cont_Par_1 +97 7Networks_LH_Cont_Par_2 +98 7Networks_LH_Cont_Par_3 +99 7Networks_LH_Cont_Par_4 +100 7Networks_LH_Cont_Temp_1 +101 7Networks_LH_Cont_OFC_1 +102 7Networks_LH_Cont_PFCl_1 +103 7Networks_LH_Cont_PFCl_2 +104 7Networks_LH_Cont_PFCl_3 +105 7Networks_LH_Cont_PFCl_4 +106 7Networks_LH_Cont_PFCl_5 +107 7Networks_LH_Cont_PFCl_6 +108 7Networks_LH_Cont_pCun_1 +109 7Networks_LH_Cont_pCun_2 +110 7Networks_LH_Cont_Cing_1 +111 7Networks_LH_Cont_Cing_2 +112 7Networks_LH_Cont_PFCmp_1 +113 7Networks_LH_Default_Temp_1 +114 7Networks_LH_Default_Temp_2 +115 7Networks_LH_Default_Temp_3 +116 7Networks_LH_Default_Temp_4 +117 7Networks_LH_Default_Temp_5 +118 7Networks_LH_Default_Temp_6 +119 7Networks_LH_Default_Temp_7 +120 7Networks_LH_Default_Temp_8 +121 7Networks_LH_Default_Par_1 +122 7Networks_LH_Default_Par_2 +123 7Networks_LH_Default_Par_3 +124 7Networks_LH_Default_Par_4 +125 7Networks_LH_Default_PFC_1 +126 7Networks_LH_Default_PFC_2 +127 7Networks_LH_Default_PFC_3 +128 7Networks_LH_Default_PFC_4 +129 7Networks_LH_Default_PFC_5 +130 7Networks_LH_Default_PFC_6 +131 7Networks_LH_Default_PFC_7 +132 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7Networks_RH_Vis_1 +167 7Networks_RH_Vis_2 +168 7Networks_RH_Vis_3 +169 7Networks_RH_Vis_4 +170 7Networks_RH_Vis_5 +171 7Networks_RH_Vis_6 +172 7Networks_RH_Vis_7 +173 7Networks_RH_Vis_8 +174 7Networks_RH_Vis_9 +175 7Networks_RH_Vis_10 +176 7Networks_RH_Vis_11 +177 7Networks_RH_Vis_12 +178 7Networks_RH_Vis_13 +179 7Networks_RH_Vis_14 +180 7Networks_RH_Vis_15 +181 7Networks_RH_Vis_16 +182 7Networks_RH_Vis_17 +183 7Networks_RH_Vis_18 +184 7Networks_RH_Vis_19 +185 7Networks_RH_Vis_20 +186 7Networks_RH_Vis_21 +187 7Networks_RH_Vis_22 +188 7Networks_RH_Vis_23 +189 7Networks_RH_SomMot_1 +190 7Networks_RH_SomMot_2 +191 7Networks_RH_SomMot_3 +192 7Networks_RH_SomMot_4 +193 7Networks_RH_SomMot_5 +194 7Networks_RH_SomMot_6 +195 7Networks_RH_SomMot_7 +196 7Networks_RH_SomMot_8 +197 7Networks_RH_SomMot_9 +198 7Networks_RH_SomMot_10 +199 7Networks_RH_SomMot_11 +200 7Networks_RH_SomMot_12 +201 7Networks_RH_SomMot_13 +202 7Networks_RH_SomMot_14 +203 7Networks_RH_SomMot_15 +204 7Networks_RH_SomMot_16 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7Networks_RH_Default_Temp_4 +295 7Networks_RH_Default_Temp_5 +296 7Networks_RH_Default_Temp_6 +297 7Networks_RH_Default_PFCv_1 +298 7Networks_RH_Default_PFCv_2 +299 7Networks_RH_Default_PFCv_3 +300 7Networks_RH_Default_PFCdPFCm_1 +301 7Networks_RH_Default_PFCdPFCm_2 +302 7Networks_RH_Default_PFCdPFCm_3 +303 7Networks_RH_Default_PFCdPFCm_4 +304 7Networks_RH_Default_PFCdPFCm_5 +305 7Networks_RH_Default_PFCdPFCm_6 +306 7Networks_RH_Default_PFCdPFCm_7 +307 7Networks_RH_Default_PFCdPFCm_8 +308 7Networks_RH_Default_PFCdPFCm_9 +309 7Networks_RH_Default_PFCdPFCm_10 +310 7Networks_RH_Default_pCunPCC_1 +311 7Networks_RH_Default_pCunPCC_2 +312 7Networks_RH_Default_pCunPCC_3 +313 7Networks_RH_Default_pCunPCC_4 +314 7Networks_RH_Default_pCunPCC_5 +315 7Networks_RH_Default_pCunPCC_6 + +316 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..8645ef751f --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,439 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 208. +# The second label can be omitted should the issue be resolved in the future. + +208 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_ExStr_1 +2 17Networks_LH_VisCent_ExStr_2 +3 17Networks_LH_VisCent_ExStr_3 +4 17Networks_LH_VisCent_ExStr_4 +5 17Networks_LH_VisCent_ExStr_5 +6 17Networks_LH_VisCent_ExStr_6 +7 17Networks_LH_VisCent_Striate_1 +8 17Networks_LH_VisCent_ExStr_7 +9 17Networks_LH_VisCent_ExStr_8 +10 17Networks_LH_VisCent_ExStr_9 +11 17Networks_LH_VisCent_ExStr_10 +12 17Networks_LH_VisCent_ExStr_11 +13 17Networks_LH_VisPeri_ExStrInf_1 +14 17Networks_LH_VisPeri_ExStrInf_2 +15 17Networks_LH_VisPeri_ExStrInf_3 +16 17Networks_LH_VisPeri_ExStrInf_4 +17 17Networks_LH_VisPeri_ExStrInf_5 +18 17Networks_LH_VisPeri_StriCal_1 +19 17Networks_LH_VisPeri_StriCal_2 +20 17Networks_LH_VisPeri_ExStrSup_1 +21 17Networks_LH_VisPeri_ExStrSup_2 +22 17Networks_LH_VisPeri_ExStrSup_3 +23 17Networks_LH_VisPeri_ExStrSup_4 +24 17Networks_LH_VisPeri_ExStrSup_5 +25 17Networks_LH_SomMotA_1 +26 17Networks_LH_SomMotA_2 +27 17Networks_LH_SomMotA_3 +28 17Networks_LH_SomMotA_4 +29 17Networks_LH_SomMotA_5 +30 17Networks_LH_SomMotA_6 +31 17Networks_LH_SomMotA_7 +32 17Networks_LH_SomMotA_8 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17Networks_LH_DorsAttnA_ParOcc_1 +65 17Networks_LH_DorsAttnA_ParOcc_2 +66 17Networks_LH_DorsAttnA_SPL_1 +67 17Networks_LH_DorsAttnA_SPL_2 +68 17Networks_LH_DorsAttnA_SPL_3 +69 17Networks_LH_DorsAttnA_SPL_4 +70 17Networks_LH_DorsAttnA_SPL_5 +71 17Networks_LH_DorsAttnA_SPL_6 +72 17Networks_LH_DorsAttnA_SPL_7 +73 17Networks_LH_DorsAttnB_PostC_1 +74 17Networks_LH_DorsAttnB_PostC_2 +75 17Networks_LH_DorsAttnB_PostC_3 +76 17Networks_LH_DorsAttnB_PostC_4 +77 17Networks_LH_DorsAttnB_PostC_5 +78 17Networks_LH_DorsAttnB_PostC_6 +79 17Networks_LH_DorsAttnB_PostC_7 +80 17Networks_LH_DorsAttnB_PostC_8 +81 17Networks_LH_DorsAttnB_PostC_9 +82 17Networks_LH_DorsAttnB_FEF_1 +83 17Networks_LH_DorsAttnB_FEF_2 +84 17Networks_LH_DorsAttnB_FEF_3 +85 17Networks_LH_DorsAttnB_PrCv_1 +86 17Networks_LH_SalVentAttnA_ParOper_1 +87 17Networks_LH_SalVentAttnA_ParOper_2 +88 17Networks_LH_SalVentAttnA_ParOper_3 +89 17Networks_LH_SalVentAttnA_Ins_1 +90 17Networks_LH_SalVentAttnA_Ins_2 +91 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17Networks_RH_TempPar_2 +408 17Networks_RH_TempPar_3 +409 17Networks_RH_TempPar_4 +410 17Networks_RH_TempPar_5 +411 17Networks_RH_TempPar_6 +412 17Networks_RH_TempPar_7 +413 17Networks_RH_TempPar_8 +414 17Networks_RH_TempPar_9 +415 17Networks_RH_TempPar_10 + +416 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..be6139a012 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_400Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,439 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 208. +# The second label can be omitted should the issue be resolved in the future. + +208 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 7Networks_LH_Vis_22 +23 7Networks_LH_Vis_23 +24 7Networks_LH_Vis_24 +25 7Networks_LH_Vis_25 +26 7Networks_LH_Vis_26 +27 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7Networks_RH_Default_pCunPCC_1 +408 7Networks_RH_Default_pCunPCC_2 +409 7Networks_RH_Default_pCunPCC_3 +410 7Networks_RH_Default_pCunPCC_4 +411 7Networks_RH_Default_pCunPCC_5 +412 7Networks_RH_Default_pCunPCC_6 +413 7Networks_RH_Default_pCunPCC_7 +414 7Networks_RH_Default_pCunPCC_8 +415 7Networks_RH_Default_pCunPCC_9 + +416 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..be6139a012 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,439 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 208. +# The second label can be omitted should the issue be resolved in the future. + +208 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 7Networks_LH_Vis_22 +23 7Networks_LH_Vis_23 +24 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7Networks_RH_Default_PFCdPFCm_10 +404 7Networks_RH_Default_PFCdPFCm_11 +405 7Networks_RH_Default_PFCdPFCm_12 +406 7Networks_RH_Default_PFCdPFCm_13 +407 7Networks_RH_Default_pCunPCC_1 +408 7Networks_RH_Default_pCunPCC_2 +409 7Networks_RH_Default_pCunPCC_3 +410 7Networks_RH_Default_pCunPCC_4 +411 7Networks_RH_Default_pCunPCC_5 +412 7Networks_RH_Default_pCunPCC_6 +413 7Networks_RH_Default_pCunPCC_7 +414 7Networks_RH_Default_pCunPCC_8 +415 7Networks_RH_Default_pCunPCC_9 + +416 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..502afe6d56 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_500Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,539 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 258. +# The second label can be omitted should the issue be resolved in the future. + +258 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 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7Networks_RH_Cont_PFCmp_1 +466 7Networks_RH_Cont_PFCmp_2 +467 7Networks_RH_Cont_PFCmp_3 +468 7Networks_RH_Default_Par_1 +469 7Networks_RH_Default_Par_2 +470 7Networks_RH_Default_Par_3 +471 7Networks_RH_Default_Par_4 +472 7Networks_RH_Default_Par_5 +473 7Networks_RH_Default_Par_6 +474 7Networks_RH_Default_Par_7 +475 7Networks_RH_Default_Par_8 +476 7Networks_RH_Default_Temp_1 +477 7Networks_RH_Default_Temp_2 +478 7Networks_RH_Default_Temp_3 +479 7Networks_RH_Default_Temp_4 +480 7Networks_RH_Default_Temp_5 +481 7Networks_RH_Default_Temp_6 +482 7Networks_RH_Default_Temp_7 +483 7Networks_RH_Default_Temp_8 +484 7Networks_RH_Default_Temp_9 +485 7Networks_RH_Default_Temp_10 +486 7Networks_RH_Default_PFCv_1 +487 7Networks_RH_Default_PFCv_2 +488 7Networks_RH_Default_PFCv_3 +489 7Networks_RH_Default_PFCv_4 +490 7Networks_RH_Default_PFCdPFCm_1 +491 7Networks_RH_Default_PFCdPFCm_2 +492 7Networks_RH_Default_PFCdPFCm_3 +493 7Networks_RH_Default_PFCdPFCm_4 +494 7Networks_RH_Default_PFCdPFCm_5 +495 7Networks_RH_Default_PFCdPFCm_6 +496 7Networks_RH_Default_PFCdPFCm_7 +497 7Networks_RH_Default_PFCdPFCm_8 +498 7Networks_RH_Default_PFCdPFCm_9 +499 7Networks_RH_Default_PFCdPFCm_10 +500 7Networks_RH_Default_PFCdPFCm_11 +501 7Networks_RH_Default_PFCdPFCm_12 +502 7Networks_RH_Default_PFCdPFCm_13 +503 7Networks_RH_Default_PFCdPFCm_14 +504 7Networks_RH_Default_PFCdPFCm_15 +505 7Networks_RH_Default_pCunPCC_1 +506 7Networks_RH_Default_pCunPCC_2 +507 7Networks_RH_Default_pCunPCC_3 +508 7Networks_RH_Default_pCunPCC_4 +509 7Networks_RH_Default_pCunPCC_5 +510 7Networks_RH_Default_pCunPCC_6 +511 7Networks_RH_Default_pCunPCC_7 +512 7Networks_RH_Default_pCunPCC_8 +513 7Networks_RH_Default_pCunPCC_9 +514 7Networks_RH_Default_pCunPCC_10 +515 7Networks_RH_Default_pCunPCC_11 + +516 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..cac7654a38 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,639 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 308. +# The second label can be omitted should the issue be resolved in the future. + +308 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_Striate_1 +2 17Networks_LH_VisCent_Striate_2 +3 17Networks_LH_VisCent_Striate_3 +4 17Networks_LH_VisCent_ExStr_1 +5 17Networks_LH_VisCent_ExStr_2 +6 17Networks_LH_VisCent_ExStr_3 +7 17Networks_LH_VisCent_ExStr_4 +8 17Networks_LH_VisCent_ExStr_5 +9 17Networks_LH_VisCent_ExStr_6 +10 17Networks_LH_VisCent_ExStr_7 +11 17Networks_LH_VisCent_ExStr_8 +12 17Networks_LH_VisCent_ExStr_9 +13 17Networks_LH_VisCent_ExStr_10 +14 17Networks_LH_VisCent_ExStr_11 +15 17Networks_LH_VisCent_ExStr_12 +16 17Networks_LH_VisCent_ExStr_13 +17 17Networks_LH_VisCent_ExStr_14 +18 17Networks_LH_VisCent_ExStr_15 +19 17Networks_LH_VisCent_ExStr_16 +20 17Networks_LH_VisCent_ExStr_17 +21 17Networks_LH_VisPeri_StriCal_1 +22 17Networks_LH_VisPeri_StriCal_2 +23 17Networks_LH_VisPeri_StriCal_3 +24 17Networks_LH_VisPeri_StriCal_4 +25 17Networks_LH_VisPeri_StriCal_5 +26 17Networks_LH_VisPeri_ExStrInf_1 +27 17Networks_LH_VisPeri_ExStrInf_2 +28 17Networks_LH_VisPeri_ExStrInf_3 +29 17Networks_LH_VisPeri_ExStrInf_4 +30 17Networks_LH_VisPeri_ExStrInf_5 +31 17Networks_LH_VisPeri_ExStrSup_1 +32 17Networks_LH_VisPeri_ExStrSup_2 +33 17Networks_LH_VisPeri_ExStrSup_3 +34 17Networks_LH_VisPeri_ExStrSup_4 +35 17Networks_LH_VisPeri_ExStrSup_5 +36 17Networks_LH_VisPeri_ExStrSup_6 +37 17Networks_LH_VisPeri_ExStrSup_7 +38 17Networks_LH_SomMotA_1 +39 17Networks_LH_SomMotA_2 +40 17Networks_LH_SomMotA_3 +41 17Networks_LH_SomMotA_4 +42 17Networks_LH_SomMotA_5 +43 17Networks_LH_SomMotA_6 +44 17Networks_LH_SomMotA_7 +45 17Networks_LH_SomMotA_8 +46 17Networks_LH_SomMotA_9 +47 17Networks_LH_SomMotA_10 +48 17Networks_LH_SomMotA_11 +49 17Networks_LH_SomMotA_12 +50 17Networks_LH_SomMotA_13 +51 17Networks_LH_SomMotA_14 +52 17Networks_LH_SomMotA_15 +53 17Networks_LH_SomMotA_16 +54 17Networks_LH_SomMotA_17 +55 17Networks_LH_SomMotA_18 +56 17Networks_LH_SomMotA_19 +57 17Networks_LH_SomMotA_20 +58 17Networks_LH_SomMotA_21 +59 17Networks_LH_SomMotA_22 +60 17Networks_LH_SomMotA_23 +61 17Networks_LH_SomMotA_24 +62 17Networks_LH_SomMotA_25 +63 17Networks_LH_SomMotA_26 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+606 17Networks_RH_TempPar_4 +607 17Networks_RH_TempPar_5 +608 17Networks_RH_TempPar_6 +609 17Networks_RH_TempPar_7 +610 17Networks_RH_TempPar_8 +611 17Networks_RH_TempPar_9 +612 17Networks_RH_TempPar_10 +613 17Networks_RH_TempPar_11 +614 17Networks_RH_TempPar_12 +615 17Networks_RH_TempPar_13 + +616 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..4338e7edf2 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_600Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,639 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 308. +# The second label can be omitted should the issue be resolved in the future. + +308 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 7Networks_LH_Vis_22 +23 7Networks_LH_Vis_23 +24 7Networks_LH_Vis_24 +25 7Networks_LH_Vis_25 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a/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..8cd5ce2d63 --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,739 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 358. +# The second label can be omitted should the issue be resolved in the future. + +358 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_Striate_1 +2 17Networks_LH_VisCent_Striate_2 +3 17Networks_LH_VisCent_Striate_3 +4 17Networks_LH_VisCent_Striate_4 +5 17Networks_LH_VisCent_ExStr_1 +6 17Networks_LH_VisCent_ExStr_2 +7 17Networks_LH_VisCent_ExStr_3 +8 17Networks_LH_VisCent_ExStr_4 +9 17Networks_LH_VisCent_ExStr_5 +10 17Networks_LH_VisCent_ExStr_6 +11 17Networks_LH_VisCent_ExStr_7 +12 17Networks_LH_VisCent_ExStr_8 +13 17Networks_LH_VisCent_ExStr_9 +14 17Networks_LH_VisCent_ExStr_10 +15 17Networks_LH_VisCent_ExStr_11 +16 17Networks_LH_VisCent_ExStr_12 +17 17Networks_LH_VisCent_ExStr_13 +18 17Networks_LH_VisCent_ExStr_14 +19 17Networks_LH_VisCent_ExStr_15 +20 17Networks_LH_VisCent_ExStr_16 +21 17Networks_LH_VisCent_ExStr_17 +22 17Networks_LH_VisCent_ExStr_18 +23 17Networks_LH_VisCent_ExStr_19 +24 17Networks_LH_VisCent_ExStr_20 +25 17Networks_LH_VisPeri_StriCal_1 +26 17Networks_LH_VisPeri_StriCal_2 +27 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+716 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..acd86c943b --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_700Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,740 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 358. +# The second label can be omitted should the issue be resolved in the future. + +358 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 7Networks_LH_Vis_22 +23 7Networks_LH_Vis_23 +24 7Networks_LH_Vis_24 +25 7Networks_LH_Vis_25 +26 7Networks_LH_Vis_26 +27 7Networks_LH_Vis_27 +28 7Networks_LH_Vis_28 +29 7Networks_LH_Vis_29 +30 7Networks_LH_Vis_30 +31 7Networks_LH_Vis_31 +32 7Networks_LH_Vis_32 +33 7Networks_LH_Vis_33 +34 7Networks_LH_Vis_34 +35 7Networks_LH_Vis_35 +36 7Networks_LH_Vis_36 +37 7Networks_LH_Vis_37 +38 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+697 7Networks_RH_Default_PFCdPFCm_18 +698 7Networks_RH_Default_PFCdPFCm_19 +699 7Networks_RH_Default_pCunPCC_1 +700 7Networks_RH_Default_pCunPCC_2 +701 7Networks_RH_Default_pCunPCC_3 +702 7Networks_RH_Default_pCunPCC_4 +703 7Networks_RH_Default_pCunPCC_5 +704 7Networks_RH_Default_pCunPCC_6 +705 7Networks_RH_Default_pCunPCC_7 +706 7Networks_RH_Default_pCunPCC_8 +707 7Networks_RH_Default_pCunPCC_9 +708 7Networks_RH_Default_pCunPCC_10 +709 7Networks_RH_Default_pCunPCC_11 +710 7Networks_RH_Default_pCunPCC_12 +711 7Networks_RH_Default_pCunPCC_13 +712 7Networks_RH_Default_pCunPCC_14 +713 7Networks_RH_Default_pCunPCC_15 +714 7Networks_RH_Default_pCunPCC_16 +715 7Networks_RH_Cont_pCun_2 + +716 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_800Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_800Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..a54c7876fb --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_800Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,840 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 408. +# The second label can be omitted should the issue be resolved in the future. + +408 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_Striate_1 +2 17Networks_LH_VisCent_Striate_2 +3 17Networks_LH_VisCent_Striate_3 +4 17Networks_LH_VisCent_ExStr_1 +5 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(desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 408. +# The second label can be omitted should the issue be resolved in the future. + +408 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 7Networks_LH_Vis_16 +17 7Networks_LH_Vis_17 +18 7Networks_LH_Vis_18 +19 7Networks_LH_Vis_19 +20 7Networks_LH_Vis_20 +21 7Networks_LH_Vis_21 +22 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+808 7Networks_RH_Default_pCunPCC_14 +809 7Networks_RH_Default_pCunPCC_15 +810 7Networks_RH_Default_pCunPCC_16 +811 7Networks_RH_Default_pCunPCC_17 +812 7Networks_RH_Default_pCunPCC_18 +813 7Networks_RH_Default_pCunPCC_19 +814 7Networks_RH_Default_pCunPCC_20 +815 7Networks_RH_Cont_pCun_3 + +816 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_17Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_17Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..2b778b7e7b --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_17Networks_FreeSurferSGM.txt @@ -0,0 +1,939 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area +# is incorrectly labeled as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 458. +# The second label can be omitted should the issue be resolved in the future. + +458 Left-Accumbens-a + +0 Unknown + +1 17Networks_LH_VisCent_Striate_1 +2 17Networks_LH_VisCent_Striate_2 +3 17Networks_LH_VisCent_Striate_3 +4 17Networks_LH_VisCent_ExStr_1 +5 17Networks_LH_VisCent_ExStr_2 +6 17Networks_LH_VisCent_ExStr_3 +7 17Networks_LH_VisCent_ExStr_4 +8 17Networks_LH_VisCent_ExStr_5 +9 17Networks_LH_VisCent_ExStr_6 +10 17Networks_LH_VisCent_ExStr_7 +11 17Networks_LH_VisCent_ExStr_8 +12 17Networks_LH_VisCent_ExStr_9 +13 17Networks_LH_VisCent_ExStr_10 +14 17Networks_LH_VisCent_ExStr_11 +15 17Networks_LH_VisCent_ExStr_12 +16 17Networks_LH_VisCent_ExStr_13 +17 17Networks_LH_VisCent_ExStr_14 +18 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17Networks_RH_TempPar_3 +899 17Networks_RH_TempPar_4 +900 17Networks_RH_TempPar_5 +901 17Networks_RH_TempPar_6 +902 17Networks_RH_TempPar_7 +903 17Networks_RH_TempPar_8 +904 17Networks_RH_TempPar_9 +905 17Networks_RH_TempPar_10 +906 17Networks_RH_TempPar_11 +907 17Networks_RH_TempPar_12 +908 17Networks_RH_TempPar_13 +909 17Networks_RH_TempPar_14 +910 17Networks_RH_TempPar_15 +911 17Networks_RH_TempPar_16 +912 17Networks_RH_TempPar_17 +913 17Networks_RH_TempPar_18 +914 17Networks_RH_TempPar_19 +915 17Networks_RH_TempPar_20 + +916 Right-Cerebellum-Cortex diff --git a/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_7Networks_FreeSurferSGM.txt b/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_7Networks_FreeSurferSGM.txt new file mode 100644 index 0000000000..985a38033a --- /dev/null +++ b/share/mrtrix3/labelconvert/Schaefer2018_900Parcels_7Networks_FreeSurferSGM.txt @@ -0,0 +1,939 @@ +# Default configuration file for MRtrix command labelconfig +# Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas +# and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation +# (desikan_killiany) + +# As of 07/2023 the left accumbens area is incorrectly labeled +# as "Left-Accumbens-a" instead of "Left-Accumbens-area" +# in the official Schaefer2018 LUTs +# (see https://github.com/ThomasYeoLab/CBIG/issues/49). +# Since labelconvert uses string recognition, +# we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") +# and match them with label 458. +# The second label can be omitted should the issue be resolved in the future. + +458 Left-Accumbens-a + +0 Unknown + +1 7Networks_LH_Vis_1 +2 7Networks_LH_Vis_2 +3 7Networks_LH_Vis_3 +4 7Networks_LH_Vis_4 +5 7Networks_LH_Vis_5 +6 7Networks_LH_Vis_6 +7 7Networks_LH_Vis_7 +8 7Networks_LH_Vis_8 +9 7Networks_LH_Vis_9 +10 7Networks_LH_Vis_10 +11 7Networks_LH_Vis_11 +12 7Networks_LH_Vis_12 +13 7Networks_LH_Vis_13 +14 7Networks_LH_Vis_14 +15 7Networks_LH_Vis_15 +16 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