Release 2020.06.16

MSGFPlus_v20200616.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.7.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Fixes a bug parsing a custom charge carrier mass from the command line (-ccm) or from a parameter file (e.g. ChargeCarrierMass=1.00727649)
  • See issue #103

Release 2020.03.14

MSGFPlus_v202000312.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.7.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Update the embedded Unimod 'brick' definitions to fix the mzid generation failure after updating Unimod.obo

Release 2020.03.12

MSGFPlus_v202000312.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.7.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Update the embedded Unimod.obo file to support recent Unimod accessions

Binaries removed due to issue that causes an exception when generating the mzid file

Release 2020.01.15

MSGFPlus_v202000115.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Resolve a new issue with duplicate peptide ids in the mzid output (problem with 2 modifications rounding to the same integer mass)
• Don't exit with exit code '0' when there is a parameter parsing error
• Add additional example files to the documentation

Release 2019.07.03

MSGFPlus_v20190703.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• -s and -d are now optional at the command line, allowing the spectrum file and database file to be defined in the configuration file

Release 2019.06.28

MSGFPlus_v20190628.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Auto-create the output directory if missing
• Verify that the user has write access to the output directory
• Updated MzidToTsvConverter

Release 2019.06.20

MSGFPlus_v20190620.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Allow the title line of spectra in a .mgf file to have DatasetName.ScanStart.ScanEnd.Charge followed by a space and extra info
• Output the Java version and OS information to the console
• Update jmzReader and jmzidentml dependencies
• Updated MzidToTsvConverter
• Add direct dependency on JAXB libraries to support Java/OpenJDK 11

Release 2019.04.18

MSGFPlus_v20190418.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Fix to issue #62, which prevents dropping of the highest m/z data point from most MS/MS spectra
• New version of MzidToTsvConverter that includes column ScanTime(Min)

Release 2019.02.28

MSGFPlus_v20190228.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Fix a bug determining the prefix and suffix residues for peptides where M was removed from the protein N-terminus

Release 2019.02.27

Use MSGFPlus_v20190228 instead of this version. This version introduced a bug that is fixed in version MSGFPlus_v20190228.

MSGFPlus_v20190227.zip has:

File	Description	Requirements
MSGFPlus.jar	MS-GF+ search engine	Java runtime, v1.8 or newer
MzidToTsvConverter.exe	Converts .mzid files to a tab-delimited text file	.NET Runtime 4.6.2 or newer
Documentation files	HTML files explaining how to use the software	n/a
Example files	Example modification files and example results	n/a

Changes in this release:

• Fix a bug that would output a single peptide evidence twice, under certain circumstances #49
• Prevent inaccurate information in peptide evidences due to differences in how protein N-Term Methionine cleavage is handled and tracked