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queryResults.csv
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"https://github.com/0u812/tellurium-combine-archive-test-cases"
"https://github.com/0xTCG/haptreex"
"https://github.com/1049451037/MagicBaidu"
"https://github.com/10XGenomics/longranger"
"https://github.com/13308204545/Chord"
"https://github.com/1KFG/Phylogenomics_HMMs"
"https://github.com/36000/Tractometry_TRR_and_robustness"
"https://github.com/3dem/relion"
"https://github.com/4DGenome/parallel_sequencing_lives"
"https://github.com/4DNucleome/PartSeg"
"https://github.com/4dn-dcic/pairix"
"https://github.com/ABC-iRobotics/VisDataSurgicalSkill"
"https://github.com/ABI-Software/scaffoldmaker"
"https://github.com/ABRG-Models/linetask2014"
"https://github.com/ACEnglish/TruvariData"
"https://github.com/ACEnglish/truvari"
"https://github.com/ADL4HEP/ADLLHCanalyses"
"https://github.com/AG-Boerries/MIRACUM-Pipe"
"https://github.com/AHallLab/PredictingCircadianTime"
"https://github.com/AHartmaier/pyLabFEA"
"https://github.com/AI4SCR/scQUEST"
"https://github.com/AIM-Harvard/SlicerRadiomics"
"https://github.com/AIRI-Institute/SEMAi"
"https://github.com/AMC-LAEB/PATAT-sim"
"https://github.com/AMC-LAEB/Within_Host_H3vH1"
"https://github.com/AMICI-dev/AMICI"
"https://github.com/AMLab-Amsterdam/AttentionDeepMIL"
"https://github.com/ANL-CEEESA/RELOG"
"https://github.com/ANTsX/ANTs"
"https://github.com/ARTbio/GalaxyKickStart"
"https://github.com/ASKCOS/ASKCOS"
"https://github.com/ASintsova/HUTI-RNAseq"
"https://github.com/ASintsova/rnaseq_analysis"
"https://github.com/ASintsova/upec_mouse_model"
"https://github.com/ATOMScience-org/AMPL"
"https://github.com/AZCompTox/AZOrange"
"https://github.com/Abdulk084/Chemception"
"https://github.com/Abe404/root_painter"
"https://github.com/Abicumaran/GBM_Complexity_I"
"https://github.com/Acribbs/TallyNN"
"https://github.com/Acribbs/UMI-tools"
"https://github.com/Adrian-Cantu/git-presentations"
"https://github.com/AgileBioFoundry/Rt_IFO0880"
"https://github.com/AgileBioFoundry/multiomicspaper"
"https://github.com/Ajarn-Jamie/rnn-p3-erp-tutorial"
"https://github.com/AlDanial/cloc"
"https://github.com/AlbusDracoSam/Farmers-protest-tweet-analysis"
"https://github.com/AlejandroAb/CASCABEL"
"https://github.com/Alex-Rosenberg/cell-2015"
"https://github.com/AlexPak/VeganTwitterEDA"
"https://github.com/AlexanderKroll/KM_prediction"
"https://github.com/AlexandrovLab/SigProfilerExtractor"
"https://github.com/AlexandrovLab/SigProfilerMatrixGenerator"
"https://github.com/AlexeyAB/darknet"
"https://github.com/AlfonsoTGarcia-Sosa/ML"
"https://github.com/AlicjaNowakowska/ETNA"
"https://github.com/AllenCell/aics-cytoparam"
"https://github.com/AllenCell/aics-segmentation"
"https://github.com/AllenCell/aics-shparam"
"https://github.com/AllenCell/aicsfeature"
"https://github.com/AllenCell/colony-processing"
"https://github.com/AllenCell/cvapipe_analysis"
"https://github.com/AllenCell/image_classifier_3d"
"https://github.com/AllenCell/quilt-data-access-tutorials"
"https://github.com/AllenCell/segmenter_model_zoo"
"https://github.com/AllenCell/stemcellorganellesizescaling"
"https://github.com/AllenCellModeling/DLITE"
"https://github.com/AllenCellModeling/actk"
"https://github.com/AllenCellModeling/diffusive_distinguishability"
"https://github.com/AllenCellModeling/pytorch_fnet"
"https://github.com/AllenCellModeling/pytorch_integrated_cell"
"https://github.com/AllenInstitute/All-active-Manuscript"
"https://github.com/AllenInstitute/All-active-Workflow"
"https://github.com/AllenInstitute/AllenSDK"
"https://github.com/AllenInstitute/BigFeta"
"https://github.com/AllenInstitute/MIES"
"https://github.com/AllenInstitute/MouseBrainHierarchy"
"https://github.com/AllenInstitute/bmtk"
"https://github.com/AllenInstitute/dipde"
"https://github.com/AllenInstitute/render-python"
"https://github.com/AllenInstitute/scrattch.hicat"
"https://github.com/AllenInstitute/scrattch.vis"
"https://github.com/AllenInstitute/sonata"
"https://github.com/AllonKleinLab/CLiNC"
"https://github.com/AllonKleinLab/scrublet"
"https://github.com/AltschulerWu-Lab/scScope"
"https://github.com/Amber-MD/pytraj"
"https://github.com/AnantharamanLab/METABOLIC"
"https://github.com/AngelikaZa/Increased-weighting-on-prior-knowledge-in-Lewy-Body-associated-visual-hallucinations.-BrainComms2019"
"https://github.com/AngelikaZa/SCFC"
"https://github.com/AngelikaZa/TVFC"
"https://github.com/Angione-Lab/GEM-Chromohalobacter-canadensis-85B"
"https://github.com/AnnaBonkhoff/DFNC_Stroke"
"https://github.com/AnnaBonkhoff/Predict_severe_complications_after_stroke"
"https://github.com/AnnaBonkhoff/Reclassifying_stroke_lesion_anatomy"
"https://github.com/Anneser/zfish_PTH2"
"https://github.com/AnnieYuan21/modulome-Salmonella"
"https://github.com/AnotherSamWilson/ParBayesianOptimization"
"https://github.com/AntonetteShibani/AutomatedRevisionGraphs"
"https://github.com/AppliedBioinformatics/Truegene"
"https://github.com/ArnauMontagud/PROFILE_v2"
"https://github.com/AstraZeneca/jazzy"
"https://github.com/AstraZeneca/skywalkR"
"https://github.com/AstraZeneca/skywalkR-graph-features"
"https://github.com/AstrobioMike/CoV-IRT-Micro"
"https://github.com/AthenaEPI/dmipy"
"https://github.com/AurelienCD/DeepHybridLearning_RadiotherapyQA_Depository_ManuscriptID_Diagnostics"
"https://github.com/AurelienCD/Radiotherapy_Quality_Control_API"
"https://github.com/Aurora-Network-Global/sdg-queries"
"https://github.com/AxelRolov/CO2_chemical_solvents"
"https://github.com/AxelRolov/hepato-derep-lignin"
"https://github.com/BBN-Q/Cliffords.jl"
"https://github.com/BBN-Q/QGL.jl"
"https://github.com/BCM-CRISPR/BCM-CRISPR.github.io"
"https://github.com/BDI-pathogens/OpenABM-Covid19"
"https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper"
"https://github.com/BDI-pathogens/covid-19_instant_tracing"
"https://github.com/BDMLab/Sepulveda_et_al_2020"
"https://github.com/BGD-UAB/PopHumanScan"
"https://github.com/BGD-UAB/iMKT"
"https://github.com/BGD-UAB/iMKTData"
"https://github.com/BHFDSC/CCU002_01"
"https://github.com/BHFDSC/CCU002_03"
"https://github.com/BHFDSC/CCU014_01"
"https://github.com/BIC-MNI/minc-toolkit-v2"
"https://github.com/BIMIB-DISCo/scFBA"
"https://github.com/BIMSBbioinfo/pigx_sars-cov-2"
"https://github.com/BMCV/galaxy-image-analysis"
"https://github.com/BMClab/covid19"
"https://github.com/BMClab/papers"
"https://github.com/BMHLab/AHBAprocessing"
"https://github.com/BRCAChallenge/federated-analysis"
"https://github.com/BUStools/BUS_notebooks_python"
"https://github.com/BUStools/BUSpaRse"
"https://github.com/BUStools/bustools"
"https://github.com/BUStools/getting_started"
"https://github.com/BVLC/caffe"
"https://github.com/BackyardBrains/Spike-Recorder-IOS"
"https://github.com/BadenLab/LED-Zappelin"
"https://github.com/BadenLab/Spikeling"
"https://github.com/BaderLab/HumanLiver"
"https://github.com/BalytskyiJaroslaw/RamanOpenSet"
"https://github.com/BalzaniEdoardo/PGAM"
"https://github.com/BaranziniLab/SPOKEsigs"
"https://github.com/BatzoglouLabSU/SIMLR"
"https://github.com/BearHuangLab/Biosensor-barcoding"
"https://github.com/BeeAnka/EFMlrs"
"https://github.com/BejaLab/vFADs"
"https://github.com/BelgianBiodiversityPlatform/data-publication-ITG"
"https://github.com/Belval/pdf2image"
"https://github.com/BenKaehler/gapped"
"https://github.com/BenKaehler/readytowear"
"https://github.com/BenLangmead/bowtie2"
"https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab"
"https://github.com/Benjamin-Lee/deep-rules"
"https://github.com/Benjamin-Vincent-Lab/Landscape-and-Selection-of-Vaccine-Epitopes-in-SARS-CoV-2"
"https://github.com/BenjaminSchwessinger/Pst_104_E137_A-_genome"
"https://github.com/BetaGenomeNinja/EL57"
"https://github.com/BhallaLab/HillTau"
"https://github.com/BiGCAT-UM/AOP-DB-RDF"
"https://github.com/BiGCAT-UM/FAIR_metrics"
"https://github.com/BiGCAT-UM/WikiPathwaysInteractions"
"https://github.com/BigDataAnalyticsGroup/bigdataengineering"
"https://github.com/BigDataWUR/locomotiondatalake"
"https://github.com/BioContainers/containers"
"https://github.com/BioDepot/fiji-demo"
"https://github.com/BioDepot/nanopore-gpu"
"https://github.com/BioPortainer/BioPortainer"
"https://github.com/BioSystemsUM/MEWpy"
"https://github.com/BioSystemsUM/cobamp"
"https://github.com/BioSystemsUM/troppo"
"https://github.com/Bioconductor/BiocWorkshops"
"https://github.com/Bioconductor/bioconductor.org"
"https://github.com/BioinfoNet/Data-mining"
"https://github.com/BioinfoNet/LowCostOpenAccess"
"https://github.com/BioinfoNet/Status-of-OpenScienceKE-LiteratureSearch"
"https://github.com/Bioinformatic-squad-DorresteinLab/OpenMS"
"https://github.com/Bioinformatic-squad-DorresteinLab/openms-gnps-tools"
"https://github.com/Bioinformatic-squad-DorresteinLab/openms-gnps-workflow"
"https://github.com/Bioprotocols/labop"
"https://github.com/Biosoft-ru/pybiouml"
"https://github.com/BlankenbergLab/nAltORFs"
"https://github.com/BleekerLab/natural-insecticides-thrips-whiteflies"
"https://github.com/BloomLabYeast/KineticButShakeless"
"https://github.com/BloomLabYeast/radial_tension"
"https://github.com/BlueBrain/BioExplorer"
"https://github.com/BlueBrain/BlueGraph"
"https://github.com/BlueBrain/BluePyEfe"
"https://github.com/BlueBrain/BluePyOpt"
"https://github.com/BlueBrain/Brayns"
"https://github.com/BlueBrain/Covid-19-Lung-Infection-Simulation"
"https://github.com/BlueBrain/EModelRunner"
"https://github.com/BlueBrain/NeuroM"
"https://github.com/BlueBrain/NeuroR"
"https://github.com/BlueBrain/Search"
"https://github.com/BlueBrain/corpus-thalamus"
"https://github.com/BlueBrain/eFEL"
"https://github.com/BlueBrain/nat"
"https://github.com/BlueBrain/neurocurator"
"https://github.com/BlueBrain/nexus"
"https://github.com/Bob05757/Renewable-energy-generation-input-feature-variables-analysis"
"https://github.com/BodenmillerGroup/3D_IMC_publication"
"https://github.com/BodenmillerGroup/ImcSegmentationPipeline"
"https://github.com/BogdanBintu/ChromatinImaging"
"https://github.com/BondGraphTools/BondGraphTools"
"https://github.com/Borda/BIRL"
"https://github.com/BorgwardtLab/LMM-Lasso"
"https://github.com/Boussau/Notebooks"
"https://github.com/Boyle-Lab/Blacklist"
"https://github.com/BradnerLab/pipeline"
"https://github.com/BrendelGroup/AEGeAn"
"https://github.com/BrendelGroup/iLoci_SLB22NARGB"
"https://github.com/Bristol-UNCOVER/Saliva_data_ML_analysis"
"https://github.com/Brookesloci/fungi_intron_paper_2020"
"https://github.com/BruntonUWBio/ajile12-nwb-data"
"https://github.com/BuildACell/bioCRNpyler"
"https://github.com/CAIsr/uniQC"
"https://github.com/CAMRIatUNC/isotropic_epi"
"https://github.com/CARPEM/GalaxyDocker"
"https://github.com/CBI-PITT/BrAinPI"
"https://github.com/CBIIT/bento-mdf"
"https://github.com/CCMS-UCSD/GNPS_Workflows"
"https://github.com/CCutts/Detecting_pairwise_correlations_in_spike_trains"
"https://github.com/CHIResearch/IEEEVideo"
"https://github.com/CIMCB/MetabComparisonBinaryML"
"https://github.com/CIMCB/MetabProjectionViz"
"https://github.com/CIMCB/MetabSimpleQcViz"
"https://github.com/CIMCB/MetabWorkflowTutorial"
"https://github.com/CIMCB/cimcb"
"https://github.com/CINPLA/exdir"
"https://github.com/CINPLA/exdir-browser"
"https://github.com/CINPLA/expipe"
"https://github.com/CINPLA/expipe-plugin-cinpla"
"https://github.com/CINPLA/hdf5-exdir-converter"
"https://github.com/CL-CHEN-Lab/Nucleosome"
"https://github.com/CMU-Perceptual-Computing-Lab/openpose"
"https://github.com/CNG-LAB/cngopen"
"https://github.com/CNR-ISMAR/rectifiedgrid"
"https://github.com/CNR-ISMAR/tools4msp"
"https://github.com/CODAIT/deep-histopath"
"https://github.com/COSPOV/sc-SynO"
"https://github.com/CPernet/spmup"
"https://github.com/CRISPRlab/CRISPRdisco"
"https://github.com/CS-BIO/IDDkin"
"https://github.com/CSSEGISandData/COVID-19"
"https://github.com/CSchoel/nolds"
"https://github.com/Cai-Lab-at-University-of-Michigan/MiCV"
"https://github.com/CalculatedContent/ww-trends-2020"
"https://github.com/CalumGabbutt/PatchSizeRevisions"
"https://github.com/Calysto/metakernel"
"https://github.com/CamDavidsonPilon/lifelines"
"https://github.com/CameronTEllis/fmrisim_validation_application"
"https://github.com/Candihub/pixel"
"https://github.com/CapPow/HerbASAP"
"https://github.com/CapPow/VARP_supplimental"
"https://github.com/CapPow/pyzbar"
"https://github.com/Cartucho/mAP"
"https://github.com/Case-esaC/iDrug"
"https://github.com/CasperVector/ihep-pkg-ose"
"https://github.com/CellMigStandOrg/CMSO-datasets"
"https://github.com/CellMigStandOrg/CMSO-training"
"https://github.com/CellMigStandOrg/ISAcreator-MIACME"
"https://github.com/CellMigStandOrg/biotracks"
"https://github.com/CellProfiler/CellProfiler-plugins"
"https://github.com/CellProfiler/examples"
"https://github.com/CellProfiler/tutorials"
"https://github.com/CellProfiling/FeatureExtraction"
"https://github.com/CellProfiling/SingleCellProteogenomics"
"https://github.com/CellSMB/EM-stellar"
"https://github.com/CenturyLinkLabs/panamax-ui"
"https://github.com/ChangLabUcsf/img_pipe"
"https://github.com/ChenMengjie/VIPER"
"https://github.com/ChengF-Lab/deepDR"
"https://github.com/ChengxiangQiu/ETiX_Amadei"
"https://github.com/ChrisNaes/2021_BNW_skin_microbiome"
"https://github.com/ChristianGebhardt/Hidden-Markury"
"https://github.com/ChristianLieven/memote-m-capsulatus"
"https://github.com/ChristianMarzahl/EIPH_WSI"
"https://github.com/ChristianMarzahl/EXACT-Sync"
"https://github.com/ChristianMarzahl/Exact"
"https://github.com/ChristosChristofidis/awesome-deep-learning"
"https://github.com/CiaranWelsh/pycotools"
"https://github.com/Cibiv/IQ-TREE"
"https://github.com/CitrineInformatics/MPEA_dataset"
"https://github.com/CitrineInformatics/python-citrination-client"
"https://github.com/Ckvalencia/hello-world"
"https://github.com/ClancyLabUCD/Multitask_network"
"https://github.com/Cloud-Drift/earthcube-meeting-2022"
"https://github.com/CoBrALab/minc-bpipe-library"
"https://github.com/CoXPath/CoXPath"
"https://github.com/ColeLab/ActflowToolbox"
"https://github.com/ColeLab/ColeAnticevicNetPartition"
"https://github.com/ColeLab/CombinedFC"
"https://github.com/ColeLab/MultipleComparisonsPermutationTesting"
"https://github.com/ColeLab/TaskFCRemoveMeanActivity"
"https://github.com/ColeLab/informationtransfermapping"
"https://github.com/CollinJ0/omnirat_paper"
"https://github.com/ComPath/compath-resources"
"https://github.com/CompBioLj/GEMS_and_MEMS"
"https://github.com/ComparativeGenomicsToolkit/cactus"
"https://github.com/ComparativeGenomicsToolkit/hal"
"https://github.com/ConesaLab/MultiPower"
"https://github.com/Confareneoclassico/Cohesion_policy"
"https://github.com/ControlCore-Project/Mediator"
"https://github.com/ControlCore-Project/concore"
"https://github.com/ControlCore-Project/concore-editor"
"https://github.com/CovertLab/WholeCell"
"https://github.com/Crop-Phenomics-Group/CropSight"
"https://github.com/Crop-Phenomics-Group/Leaf-GP"
"https://github.com/CrossRef/rest-api-doc"
"https://github.com/Csenevirathna/InfluenceCascades"
"https://github.com/CyTargetLinker/cytargetlinker"
"https://github.com/CyTargetLinker/cytargetlinker-automation"
"https://github.com/CyTargetLinker/linksetCreator"
"https://github.com/Cyan4973/FiniteStateEntropy"
"https://github.com/CyberDataLab/botbusters-spanish-general-elections"
"https://github.com/Cyberdefence-Lab-Murcia/ReCAN"
"https://github.com/DC-analysis/fcswrite"
"https://github.com/DCPROGS/SCALCS"
"https://github.com/DEIB-GECO/GeneNetFusion"
"https://github.com/DEIB-GECO/Metadata-Manager"
"https://github.com/DEIB-GECO/PyGMQL"
"https://github.com/DEIB-GECO/ShallowChrome"
"https://github.com/DEIB-GECO/VarSum"
"https://github.com/DEIB-GECO/geco_agent_loader"
"https://github.com/DIAGNijmegen/panda-challenge"
"https://github.com/DIAL-RPI/CVD-Risk-Estimator"
"https://github.com/DSASC/yergaliyev2020"
"https://github.com/DSx5WcObth/2012_to_2022"
"https://github.com/DWALab/Osterlund_et_al_2021_BIK_Localization"
"https://github.com/DaigoOkada/DICNAPtutorial"
"https://github.com/DaigoOkada/kernel_deef_code"
"https://github.com/DaigoOkada/kernel_deef_tutorial"
"https://github.com/DaleMoulding/Fiji-Macros"
"https://github.com/DamLabResources/hiv-crispr-review"
"https://github.com/DanBushey/CircuitCatcher"
"https://github.com/DanChitwood/PlantsAndPython"
"https://github.com/DanChitwood/grapevine_rings"
"https://github.com/DanChitwood/grapevine_shoots"
"https://github.com/DanJeffries/My_misc_scripts"
"https://github.com/Danko-Lab/RunOnBamToBigWig"
"https://github.com/Dantecore2/DriverID_Dateset"
"https://github.com/DanuserLab/Windowing-Protrusion"
"https://github.com/Daria-Br/TCGA_clustering"
"https://github.com/Data2Dynamics/d2d"
"https://github.com/Data2Semantics/prov-o-matic"
"https://github.com/DataBiosphere/dsub"
"https://github.com/DataBiosphere/toil"
"https://github.com/DataKind-UK/data-ethics-book-club-in-a-box"
"https://github.com/DataResponsibly/hiring-stability-audit"
"https://github.com/DataSciBurgoon/toxcast_steroidogenesis"
"https://github.com/Dauvit/Data_enrichment"
"https://github.com/DebadityaShome/COVID-Transformer"
"https://github.com/DeepLabCut/DLCutils"
"https://github.com/DeepLabCut/DeepLabCut"
"https://github.com/DeepPathology/CanineCutaneousTumors"
"https://github.com/DeepPathology/MITOS_WSI_CCMCT"
"https://github.com/DeepPathology/MITOS_WSI_CMC"
"https://github.com/Degiacomi-Lab/biobox"
"https://github.com/DepMap-Analytics/CoRe"
"https://github.com/DerrickWood/kraken2"
"https://github.com/DessimozLab/OmaDB"
"https://github.com/DessimozLab/OmaStandalone"
"https://github.com/DessimozLab/f1000_OmaPrimer"
"https://github.com/DessimozLab/f1000_PhylogeneticTree"
"https://github.com/DessimozLab/pyomadb"
"https://github.com/DessimozLab/read2tree"
"https://github.com/Dfam-consortium/RepeatModeler"
"https://github.com/Dfam-consortium/TETools"
"https://github.com/DiODeProject/MuMoT"
"https://github.com/DiamondLightSource/Savu"
"https://github.com/DiamondLightSource/SuRVoS2"
"https://github.com/DiamondLightSource/gas-hydrate-segmentation-unets"
"https://github.com/DiamondLightSource/ispyb-database"
"https://github.com/DiankeLi/mSCLC"
"https://github.com/DinarteVasconcelos/Supervised-Segmentation"
"https://github.com/Discngine/fpocket"
"https://github.com/DiseaseOntology/HumanDiseaseOntology"
"https://github.com/DistributedScience/Distributed-CellProfiler"
"https://github.com/DmitryUlyanov/Multicore-TSNE"
"https://github.com/DocNow/twarc"
"https://github.com/Dongwon-Lee/gkmQC"
"https://github.com/Dongwon-Lee/gkmQC-manuscript"
"https://github.com/DorresteinLaboratory/Bioactive_Molecular_Networks"
"https://github.com/DorresteinLaboratory/XCMS3_FeatureBasedMN"
"https://github.com/DorresteinLaboratory/XSectionalCF"
"https://github.com/Dowell-Lab/ChIP-Flow"
"https://github.com/Dowell-Lab/Nascent-Flow"
"https://github.com/Dowell-Lab/Protocol-Comparisons"
"https://github.com/Dowell-Lab/TFEA"
"https://github.com/Dowell-Lab/Tfit"
"https://github.com/Dowell-Lab/mumerge"
"https://github.com/Draviam-lab/spinx_local"
"https://github.com/DriskellLab/Priming-Skin-to-Regenerate-by-Inducing-Lef1-Expression-in-Fibroblasts-"
"https://github.com/DrubinBarnes/Akamatsu_CME_manuscript"
"https://github.com/DrubinBarnes/Jin_Shirazinejad_et_al_branched_actin_manuscript"
"https://github.com/DrubinBarnes/YeastTrackAnalysis"
"https://github.com/EAndrade-Lotero/SODCL"
"https://github.com/EBI-COMMUNITY/compare-amr"
"https://github.com/EBI-COMMUNITY/ebi-parasite"
"https://github.com/EBI-COMMUNITY/fli-RIEMS"
"https://github.com/EBI-Metagenomics/mgnify-lr"
"https://github.com/EBI-Metagenomics/notebooks"
"https://github.com/EBI-Metagenomics/pipeline-v5"
"https://github.com/EBISPOT/DUO"
"https://github.com/EBosi/scPanBetaT2D"
"https://github.com/EDePasquale/DoubletDecon"
"https://github.com/EEM0N/sathorndata.github.io"
"https://github.com/EESI/ISM"
"https://github.com/EESI/ncov_ism"
"https://github.com/ELELAB/cancermuts"
"https://github.com/ELIFE-ASU/PyInform"
"https://github.com/ENCODE-DCC/chip-seq-pipeline"
"https://github.com/ENCODE-DCC/chip-seq-pipeline2"
"https://github.com/ENCODE-DCC/long-rna-seq-pipeline"
"https://github.com/EPFL-LCSB/pytfa"
"https://github.com/Ecogenomics/CheckM"
"https://github.com/Edahi/NGSDataAnalysis"
"https://github.com/EducationalTestingService/factor_analyzer"
"https://github.com/Eggeling-Lab-Microscope-Software/TRAIT2D"
"https://github.com/Eirinits/psoKC_model"
"https://github.com/EisenRa/2020_SHNW_Faecal_16S"
"https://github.com/ElsevierSoftwareX/SOFTX-D-21-00010"
"https://github.com/EmanuelGoncalves/dtrace"
"https://github.com/Emergent-Behaviors-in-Biology/community-simulator"
"https://github.com/Emergent-Behaviors-in-Biology/covid19"
"https://github.com/Emergent-Behaviors-in-Biology/microbiome-patterns"
"https://github.com/Emognition/Emognition-wearable-dataset-2020"
"https://github.com/EnJunChoong/MBTI_JP_Prediction"
"https://github.com/EngqvistLab/UniRep50"
"https://github.com/Ensembl/ensembl-metadata"
"https://github.com/Ensembl/ensembl-vep"
"https://github.com/Ensembl/plant-scripts"
"https://github.com/Ensembl/plant_tools"
"https://github.com/Ensembl/treebest"
"https://github.com/EnzoAndree/FastMLST"
"https://github.com/EnzoAndree/FastMLST-Concordance"
"https://github.com/EricKenjiLee/WaveMAP_Paper"
"https://github.com/EricSDavis/dietJuicer"
"https://github.com/EricThomson/gigadetector"
"https://github.com/EthicalML/xai"
"https://github.com/EtienneCmb/tensorpac"
"https://github.com/EtienneCmb/visbrain"
"https://github.com/EtienneHouze/memorability_code"
"https://github.com/Evolinc/Brassicaceae_lincRNAs"
"https://github.com/Evolinc/Evolinc-II"
"https://github.com/EyringMLClimateGroup/behrens22james_SPCAM_VED"
"https://github.com/F1000Research/yeadon"
"https://github.com/FAANG/dcc-metadata"
"https://github.com/FABLE-3DXRD/ImageD11"
"https://github.com/FAIRDataPipeline/javaSimpleModel"
"https://github.com/FAIRDataPipeline/rSimpleModel"
"https://github.com/FAIRDataTeam/FAIRDataPoint-Spec"
"https://github.com/FAIRMetrics/Metrics"
"https://github.com/FCN-ESE/JERICHO-E-usage"
"https://github.com/FCS-analysis/multipletau"
"https://github.com/FGPLab/cydrasil"
"https://github.com/FHIR/sql-on-fhir"
"https://github.com/FNNDSC/ami"
"https://github.com/Faezov/PDBrenum"
"https://github.com/FangmingXie/mctseq_over_under_splitting"
"https://github.com/FePhyFoFum/SortaDate"
"https://github.com/FelixKrueger/TrimGalore"
"https://github.com/FellowsFreiesWissen/computational_notebooks"
"https://github.com/Finn-Lab/SanntiS"
"https://github.com/FlashRepo/epsilon-PAL"
"https://github.com/Fluorescence-Tools/FRETlines"
"https://github.com/Fluorescence-Tools/LabelLib"
"https://github.com/Fluorescence-Tools/chisurf"
"https://github.com/FluxML/Flux.jl"
"https://github.com/FlyBrainLab/CXcircuits"
"https://github.com/FlyBrainLab/FlyBrainLab"
"https://github.com/FlyBrainLab/OlfTrans"
"https://github.com/FlyBrainLab/Tutorials"
"https://github.com/FlyBrainLab/datasets"
"https://github.com/FoldingAtHome/covid-moonshot"
"https://github.com/FoodOntology/foodon"
"https://github.com/FordyceLab/MRBLEs"
"https://github.com/FowlerLab/vcs_2019"
"https://github.com/FrancescoFerrari88/AutoRELACS"
"https://github.com/FrancescoFerrari88/code_DOT1L_paper"
"https://github.com/FrancisCrickInstitute/protocolBLAST"
"https://github.com/FrancisCrickInstitute/warpAnnotations"
"https://github.com/FredHutch/FAMLI"
"https://github.com/FredHutch/aws-batch-helpers"
"https://github.com/FredHutch/docker-diamond"
"https://github.com/FredHutch/docker-eggnog-mapper"
"https://github.com/FredHutch/docker-humann2"
"https://github.com/FredHutch/docker-metaspades"
"https://github.com/FredHutch/docker-sra"
"https://github.com/FredHutch/evaluate-gene-level-metagenomics-tools"
"https://github.com/FredHutch/find-cags"
"https://github.com/FredHutch/integrate-metagenomic-assemblies"
"https://github.com/FredHutch/minot-experiment-collection"
"https://github.com/FunctionLab/ExPecto"
"https://github.com/FunctionLab/selene"
"https://github.com/Furman-Lab/Peptide_docking_with_AF2_and_RosettAfold"
"https://github.com/G-Node/nix"
"https://github.com/G-Node/nix-odML-converter"
"https://github.com/G-Node/odml-ui"
"https://github.com/G-Node/python-odml"
"https://github.com/GHFC/StratiPy"
"https://github.com/GIST-CSBL/DeepConv-DTI"
"https://github.com/GJOsmak/miRNET_HCM"
"https://github.com/GMOD/Apollo"
"https://github.com/GMOD/docker-apollo"
"https://github.com/GMOD/jbrowse-jupyter"
"https://github.com/GMendiratta/ROSETTA-for-Cancer-Mutations"
"https://github.com/GT-NucleicAcids/pnab"
"https://github.com/GUDHI/TDA-tutorial"
"https://github.com/GW-HIVE/HIVE-lab"
"https://github.com/GWC-DCMB/curriculum-notebooks"
"https://github.com/GabrielBalabanResearch/TCRpower"
"https://github.com/Gaius-Augustus/BRAKER"
"https://github.com/GangCaoLab/CoolBox"
"https://github.com/Gardner-BinfLab/SoDoPE_paper_2020"
"https://github.com/Gardner-BinfLab/TISIGNER-ReactJS"
"https://github.com/Garg-Lab/Sponge-and-dervied-Bacteria-Blank-Subtraction-2022"
"https://github.com/GelatinFrogs/Cells2Circles"
"https://github.com/GelatinFrogs/ME-VAE_Architecture"
"https://github.com/GenderGapSTEM-PublicationAnalysis/name_gender_inference"
"https://github.com/GenomiqueENS/dockerfiles"
"https://github.com/GeorgeYuriCADD/IC50-dataset"
"https://github.com/German-BioImaging/RDM4mic"
"https://github.com/GiacomoGiacomelli/Carp3-Co-localization-PALM"
"https://github.com/Gibthon/Gibthon"
"https://github.com/Gilles86/in_limbo"
"https://github.com/GiocomoLab/ln-model-of-mec-neurons"
"https://github.com/GiovannaNicora/MLVar"
"https://github.com/GlastonburyC/Adipocyte-U-net"
"https://github.com/Gogarten-Lab-Team/NanoH_GBE_2020"
"https://github.com/GokulEpiphany/contests-final-code"
"https://github.com/GonzalezBiophysicsLab/hFRET"
"https://github.com/GoogleCloudPlatform/covid-19-open-data"
"https://github.com/GoogleCloudPlatform/dicomweb-wsi-viewer"
"https://github.com/GoogleCloudPlatform/qupath-chcapi-extension"
"https://github.com/GoogleCloudPlatform/wsi-to-dicom-converter"
"https://github.com/Gorbalenya-Lab/hh-suite-notebooks"
"https://github.com/GreenwoodLab/methylation450KPipeline"
"https://github.com/GreenwoodLab/pcev_pipelineCBRAIN"
"https://github.com/Gregor-Mendel-Institute/mlmm"
"https://github.com/GuanLab/ciclops"
"https://github.com/Gubskiy-Ilya/iaPWI_cells"
"https://github.com/Guindillator/Certainty"
"https://github.com/HCVE/echo-clustering"
"https://github.com/HDFGroup/h5serv"
"https://github.com/HMS-IDAC/Cypository"
"https://github.com/HMS-IDAC/S3segmenter"
"https://github.com/HPCBio/BW_VariantCalling"
"https://github.com/HPCNow/PHPQstat"
"https://github.com/HSE-LAMBDA/sango"
"https://github.com/HadrienG/InSilicoSeq"
"https://github.com/HallermannLab/2019_HCN"
"https://github.com/HannahVMeyer/limmbo"
"https://github.com/Harigua/ML_DD-applications"
"https://github.com/Harold-Solbrig/funowl"
"https://github.com/HaxbyLab/raiders_data"
"https://github.com/HayLab/Split-ClvR"
"https://github.com/HazyResearch/metal"
"https://github.com/HazyResearch/numbskull"
"https://github.com/Healthink/PIC"
"https://github.com/Heidy-Elkhaligy/Comparative-Analysis-of-Structural-Features-in-SLiMs-from-Eukaryotes-Bacteria-and-Viruses"
"https://github.com/HeilemannLab/SPTAnalyser"
"https://github.com/HeilemannLab/ermine-tutorial"
"https://github.com/HeilemannLab/pyErmine"
"https://github.com/HelloYiHan/DriverML"
"https://github.com/HelmchenLab/CalciumSim"
"https://github.com/HelmchenLabSoftware/Cascade"
"https://github.com/HenriquesLab/ZeroCostDL4Mic"
"https://github.com/HenschelLab/PopulaPy"
"https://github.com/HiDiHlabs/ssam"
"https://github.com/HiDiHlabs/ssam_example"
"https://github.com/Hickerlab/msBayes"
"https://github.com/HipSTR-Tool/HipSTR-references"
"https://github.com/Hitachi-Automotive-And-Industry-Lab/semantic-segmentation-editor"
"https://github.com/Hjorthmedh/RetinalMap"
"https://github.com/Hjorthmedh/Snudda"
"https://github.com/Hoa-Lab/2020_Spindle-Root"
"https://github.com/Hoohm/CITE-seq-Count"
"https://github.com/HopkinsIDD/VOCsamplesize"
"https://github.com/Hsu-Che-Wei/COPILOT"
"https://github.com/HuLiLab/GBM_CCN1"
"https://github.com/HuLiLab/NetDecoder"
"https://github.com/Huelse/SEAL-Python"
"https://github.com/Hughes-Genome-Group/CIView"
"https://github.com/Hughes-Genome-Group/MLVPanel"
"https://github.com/Hughes-Genome-Group/mlv"
"https://github.com/Huitzilo/glomcentric_code"
"https://github.com/HullUni-bioinformatics/Diplotaxodon_twilight_RAD"
"https://github.com/HullUni-bioinformatics/Harper_et_al_2018"
"https://github.com/HullUni-bioinformatics/MIG-Phylogenomics"
"https://github.com/HullUni-bioinformatics/ReproPhylo"
"https://github.com/HullUni-bioinformatics/metaBEAT"
"https://github.com/HumanBrainED/NHP-BrainExtraction"
"https://github.com/HumanBrainProject/olfactory-bulb-3d"
"https://github.com/HumanBrainProject/swcPlus"
"https://github.com/Hurley-Lab/FIP-NDP52-paper"
"https://github.com/Hurley-Lab/GUVquantification"
"https://github.com/HuyenNguyenHelen/JMLA_CORD19-DS"
"https://github.com/IBCNServices/pyRDF2Vec"
"https://github.com/IBM/taxinomitis"
"https://github.com/IBM/wntrac"
"https://github.com/ICAN-aneurysms/RIA-predict"
"https://github.com/ICB-DCM/pyABC"
"https://github.com/ICB-DCM/pyPESTO"
"https://github.com/IDAEA-EVS/Isocompy"
"https://github.com/IDLabResearch/TurtleValidator"
"https://github.com/IDR/idr-metadata"
"https://github.com/IDR/idr-notebooks"
"https://github.com/IDSIA/sacred"
"https://github.com/IGGoncalves/PhysiCOOL"
"https://github.com/IMAXT/imaxt-image"
"https://github.com/IMAXT/imc-nuclear-segmentation"
"https://github.com/INCF/csa"
"https://github.com/INCF/nineml-python"
"https://github.com/INCF/nineml-spec"
"https://github.com/INM-6/Builder"
"https://github.com/INM-6/NetworkUnit"
"https://github.com/INM-6/beNNch"
"https://github.com/INM-6/beNNch-models"
"https://github.com/INM-6/beNNch-plot"
"https://github.com/INM-6/hybridLFPy"
"https://github.com/INM-6/multi-area-model"
"https://github.com/INM-6/python-odmltables"
"https://github.com/IPCC-WG1/Atlas"
"https://github.com/ISA-tools/MSIO"
"https://github.com/ISA-tools/isa-api"
"https://github.com/ISARICDataPlatform/ISARICBasics"
"https://github.com/ISYSLAB-HUST/DeepTMpred"
"https://github.com/ITISFoundation/osparc-simcore"
"https://github.com/IUIDSL/kgap_lincs-idg"
"https://github.com/IanEisenberg/Self_Regulation_Ontology"
"https://github.com/Identity-lab/Tutorial-on-salient-social-Identity-detection-model"
"https://github.com/Illumina/PlatinumGenomes"
"https://github.com/Illumina/Polaris"
"https://github.com/Illumina/paragraph"
"https://github.com/ImagingDataCommons/slim"
"https://github.com/ImagingInformatics/machine-learning"
"https://github.com/Imteaj10/Data-Analytics-for-COVID-19-Prediction-"
"https://github.com/InfantLab/VASC"
"https://github.com/InfantLab/little-drummers"
"https://github.com/Infogosoft/jsdicom"
"https://github.com/Inria-Empenn/Anima-Public"
"https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks"
"https://github.com/Institut-Zdravotnych-Analyz/covid19-data"
"https://github.com/IntelRealSense/librealsense"
"https://github.com/JAremko/docker-x11-bridge"
"https://github.com/JBEI/ART"
"https://github.com/JBEI/OMG"
"https://github.com/JBEI/clusterCAD"
"https://github.com/JBEI/edd"
"https://github.com/JBEI/edd-utils"
"https://github.com/JBEI/ice"
"https://github.com/JBEI/jqmm"
"https://github.com/JBEI/limitfluxtocore"
"https://github.com/JBjouffray/SeafoodFinance"
"https://github.com/JChander/DeepMiR2GO"
"https://github.com/JIC-CSB/dtoolai"
"https://github.com/JIC-CSB/jicbioimage.core"
"https://github.com/JIC-CSB/jicbioimage.illustrate"
"https://github.com/JIC-CSB/jicbioimage.segment"
"https://github.com/JIC-CSB/jicbioimage.transform"
"https://github.com/JLiLab/scRNAseq_Cerebellum"
"https://github.com/JakeWharton/timber"
"https://github.com/JakobAsslaender/MRFingerprintingRecon.jl"
"https://github.com/JakobAsslaender/MRIgeneralizedBloch.jl"
"https://github.com/Jalink-lab/pde-screen-2021"
"https://github.com/JaviLaplaza/Pytorch-Siamese"
"https://github.com/JecaTosovic/ConservedWaterSearch"
"https://github.com/JecaTosovic/WaterNetworkAnalysis"
"https://github.com/JeffreyMolendijk/skeletal_muscle"
"https://github.com/JeremyPike/RSMLM"
"https://github.com/JeremyPike/RSMLM-tutorials"
"https://github.com/Jessdlin/CellCounter"
"https://github.com/Jhsmit/ColiCoords"
"https://github.com/JinmiaoChenLab/Batch-effect-removal-benchmarking"
"https://github.com/JoaoFelipe/ipython-unittest"
"https://github.com/JohannesKarwou/ParmEd"
"https://github.com/JonETJakobsson/Connectivity-paper"
"https://github.com/JonETJakobsson/scConnect"
"https://github.com/JonathanShor/DoubletDetection"
"https://github.com/JuBiotech/Supplement-to-Reiter-et-al.-2022a"
"https://github.com/JuBiotech/calibr8-paper"
"https://github.com/JuliaCloud/AWSSDK.jl"
"https://github.com/JuliaDynamics/DrWatson.jl"
"https://github.com/JuliaGraphs/SimpleWeightedGraphs.jl"
"https://github.com/JuliaInterop/CxxWrap.jl"
"https://github.com/JuliaStats/Clustering.jl"
"https://github.com/JupitersMight/DI2"
"https://github.com/JustAnotherArchivist/snscrape"
"https://github.com/KCL-BMEIS/ExeTera"
"https://github.com/KCL-BMEIS/ExeTeraEval"
"https://github.com/KGerhardt/Recplot_4"
"https://github.com/KULL-Centre/DEERpredict"
"https://github.com/KULL-Centre/ProteinUnfolding2D"
"https://github.com/KULL-Centre/_2022_Johansson_GMMA_GFP"
"https://github.com/KULL-Centre/_2022_Norrild_GMMA_TRX"
"https://github.com/KULL-Centre/papers"
"https://github.com/Kaggle/docker-python"
"https://github.com/KaiDMML/FakeNewsNet"
"https://github.com/KaimingHe/deep-residual-networks"
"https://github.com/Kal-Lap/PseudotimeMethylation"
"https://github.com/KaliLab/HippoUnit_demo"
"https://github.com/KaliLab/hippounit"
"https://github.com/KamitaniLab/BrainDecoderToolbox2"
"https://github.com/KamitaniLab/GenericObjectDecoding"
"https://github.com/KamitaniLab/brain-decoding-datasets"
"https://github.com/KamitaniLab/cnnpref"
"https://github.com/Karaniare/Optimized_GATK4_pipeline"
"https://github.com/KarolChlasta/ADReSS-Challenge2020"
"https://github.com/KavrakiLab/SARS-Arena"
"https://github.com/KavrakiLab/hla-arena"
"https://github.com/Ken-Lau-Lab/NVR"
"https://github.com/Ken-Lau-Lab/STAR_Protocol"
"https://github.com/Ken-Lau-Lab/dropkick"
"https://github.com/KenLauLab/DR-structure-preservation"
"https://github.com/KenLauLab/STAR_Protocol"
"https://github.com/KenLauLab/dropkick"
"https://github.com/Kennedy-Lab-UW/Duplex-Sequencing"
"https://github.com/KielLagmay/RPTEL_CausalImpact_Lagmay_Rodrigo"
"https://github.com/KimGroup/XTEC"
"https://github.com/Kirk3gaard/2020-05-20_ZymoMock_Q20EA"
"https://github.com/KirstenHilger/AttentionGo1"
"https://github.com/KlugerLab/FIt-SNE"
"https://github.com/KlugerLab/pyFIt-SNE"
"https://github.com/KnurpsBram/PyTorch-PatternNet"
"https://github.com/Kobert/viroMapper"
"https://github.com/Koga-MD/DL-Tauopathies"
"https://github.com/Kohulan/DECIMER-Image-Segmentation"
"https://github.com/KosinskiLab/AlphaPulldown"
"https://github.com/KosuriLab/MFASS"
"https://github.com/KramerChristian/NonadditivityAnalysis"
"https://github.com/KrishnaswamyLab/MAGIC"
"https://github.com/KrishnaswamyLab/PHATE"
"https://github.com/KrishnaswamyLab/TrajectoryNet"
"https://github.com/Kwan-Lab/behavioral-rigs"
"https://github.com/Kwan-Lab/wang2022"
"https://github.com/LAD-PUCRS/Arena_SARS-BCG"
"https://github.com/LAMPSYORKU/OntarioClimateDataPortal"
"https://github.com/LBC-LNBio/pyKVFinder"
"https://github.com/LBLQMM/MACAW"
"https://github.com/LFPy/LFPy"
"https://github.com/LFPy/LFPykernels"
"https://github.com/LM-UGent/SPeDE"
"https://github.com/LMSE/aybrah"
"https://github.com/LMSE/impact"
"https://github.com/LP26/Pollack-Lab-Cornell"
"https://github.com/LPDI-EPFL/rstoolbox"
"https://github.com/LRydin/MFDFA"
"https://github.com/LTS5/cffdata"
"https://github.com/LaRoccaRaphael/MSI_recalibration"
"https://github.com/LabBandSB/BIODICA"
"https://github.com/LabBandSB/re-Searcher"
"https://github.com/LabGenMO/phylo-profiling"
"https://github.com/LabTranslationalArchitectomics/riboWaltz"
"https://github.com/LabTrivedi/MOrgAna"
"https://github.com/LandesLab/STaSI"
"https://github.com/Laniakea-elixir-it/Vinyl-Wrapper"
"https://github.com/Lasagne/Lasagne"
"https://github.com/LauraKateYoung/ERICA"
"https://github.com/LeeKamentsky/python-javabridge"
"https://github.com/LeonBondeLarsen/tsne_classifier"
"https://github.com/LeonidBystrykh/PY4GE"
"https://github.com/LewisLabUCSD/CORSPOTS"
"https://github.com/LewisLabUCSD/CellFie"
"https://github.com/LewisLabUCSD/GlyCompare"
"https://github.com/LewisLabUCSD/MammalianSecretoryRecon"
"https://github.com/LewisLabUCSD/autism_classifier"
"https://github.com/LiZhaoLab/Oct4Sox2_nuclpos"
"https://github.com/LidarLiu/ALS_Classification_Hierarchically_Geometry_Intensity"
"https://github.com/Lieszlab/Benakis-et-al.-2022-eLife"
"https://github.com/Lightning-AI/lightning"
"https://github.com/LiminLi-xjtu/BLTSA"
"https://github.com/LiminLi-xjtu/XGSEA"
"https://github.com/LiuLab-Bioelectronics-Harvard/ClusterMap"
"https://github.com/LoLab-MSM/MAGINE"
"https://github.com/LoLab-MSM/MAGINE_Supplement_notebooks"
"https://github.com/LoLab-MSM/pyvipr"
"https://github.com/LobellLab/csdl"
"https://github.com/LozRiviera/BRC_Oxford2_bibliometrics"
"https://github.com/LucisQ/Rank-order"
"https://github.com/Lucy-Forrest-Lab/HDXer"
"https://github.com/Lucy-Forrest-Lab/hdxer_tutorials_livecoms"
"https://github.com/Luthey-Schulten-Lab/Lattice_Microbes"
"https://github.com/Luthey-Schulten-Lab/Minimal_Cell"
"https://github.com/LuyiTian/sc_mixology"
"https://github.com/LymeMIND/LM2-study-supporting-materials"
"https://github.com/LymeMIND/LM3-study-supporting-materials"
"https://github.com/LynaLuo-Lab/Piezo1-all-atom-model"
"https://github.com/M0hammadL/scGen_notebooks"
"https://github.com/MAS-Research/SEIR-Campus"
"https://github.com/MChavent/Hbond-analysis"
"https://github.com/MDAnalysis/RotamerConvolveMD"
"https://github.com/MEG-SPIKES/aspire-alphacsc-epilepsy-MEG"
"https://github.com/MEG-SPIKES/megspikes"
"https://github.com/MEP-LINCS/MDD"
"https://github.com/MEP-LINCS/MEP_Processing"
"https://github.com/MIC-DKFZ/batchgenerators"
"https://github.com/MIT-LCP/bhi-bsn-challenge"
"https://github.com/MIT-LCP/mimic-code"
"https://github.com/MIT-LCP/mimic-iii-paper"
"https://github.com/MIT-LCP/mimic-omop"
"https://github.com/MIT-LCP/mimic-website"
"https://github.com/MITHaystack/science-casestudies"
"https://github.com/MITHaystack/scikit-dataaccess"
"https://github.com/MITeaps/pyinsar"
"https://github.com/MLspike/spikes"
"https://github.com/MNoichl/UMAP-examples-mammoth-"
"https://github.com/MPBA/pyphysio"
"https://github.com/MRCIEU/MELODI-Presto"
"https://github.com/MRCIEU/epigraphdb"
"https://github.com/MRtrix3/mrtrix3"
"https://github.com/MSGFPlus/msgfplus"
"https://github.com/MSI-Metabolomics-Standards-Initiative/MIDAS"
"https://github.com/MUMC-MEDMIC/SIGBIO-proficiencytest"
"https://github.com/MYTLab/pyAggreg"
"https://github.com/MaastrichtU-IDS/semantic-enhancement"
"https://github.com/MaayanLab/AutoSigGen"
"https://github.com/MaayanLab/CCLE_Clustergrammer"
"https://github.com/MaayanLab/CST_Lung_Cancer_Viz"
"https://github.com/MaayanLab/Cytof_Plasma_PMA"
"https://github.com/MaayanLab/Drugmonizome"
"https://github.com/MaayanLab/Drugmonizome-ML"
"https://github.com/MaayanLab/KEA3web"
"https://github.com/MaayanLab/KEA3webData"
"https://github.com/MaayanLab/L1000toRNAseq"
"https://github.com/MaayanLab/MNIST_heatmaps"
"https://github.com/MaayanLab/USDA_Nutrients_Viz"
"https://github.com/MaayanLab/Zika-RNAseq-Pipeline"
"https://github.com/MaayanLab/appyter"
"https://github.com/MaayanLab/appyter-catalog"
"https://github.com/MaayanLab/clustergrammer"
"https://github.com/MaayanLab/clustergrammer-docs"
"https://github.com/MaayanLab/clustergrammer-py"
"https://github.com/MaayanLab/clustergrammer-web"
"https://github.com/MaayanLab/clustergrammer-widget"
"https://github.com/MaayanLab/drugshot"
"https://github.com/MaayanLab/genesetr"
"https://github.com/MaayanLab/prismexp"
"https://github.com/MaayanLab/sigcom-lincs"
"https://github.com/MaayanLab/signature-commons"
"https://github.com/MaayanLab/x2k_web"
"https://github.com/MacIver-Lab/Ergodic-Information-Harvesting"
"https://github.com/Macatools/macapype"
"https://github.com/Machine-Learning-Tokyo/AI_Curriculum"
"https://github.com/MagGeo/MagGeo"
"https://github.com/Maggi-Chen/FusionSeeker"
"https://github.com/ManchesterBioinference/Scasat"
"https://github.com/Mangul-Lab-USC/enhancing_reproducibility"
"https://github.com/Mangul-Lab-USC/pyTCR"
"https://github.com/Mangul-Lab-USC/pyTCR_publication"
"https://github.com/Mangul-Lab-USC/telescope"
"https://github.com/MannLabs/CKG"
"https://github.com/MannLabs/alphamap"
"https://github.com/MannLabs/pydiaid"
"https://github.com/MannLabs/structuremap"
"https://github.com/MannLabs/structuremap_analysis"
"https://github.com/ManuGar/FrImCla"
"https://github.com/Marcello-Sega/pytim"
"https://github.com/MareikeBerger/Cellcycle"
"https://github.com/MariaEckstein/SLCN"
"https://github.com/MarieOestreich/hCoCena"
"https://github.com/Mariewelt/OpenChem"
"https://github.com/MarioniLab/EmbryoTimecourse2018"
"https://github.com/MarioniLab/MouseGastrulationData"
"https://github.com/Marjola89/3Dstrain_analysis"
"https://github.com/MathCancer/liver-mechanobiology"
"https://github.com/MatildeVaghi/self_regulation_COVID-19"
"https://github.com/MatreyekLab/ACE2_variants"
"https://github.com/MaxMeta/MH_project_data"
"https://github.com/MaxRollwage/NatureCommunications"
"https://github.com/MaxVidgof/cherry-picker"
"https://github.com/MaxvandenBoom/matmef"
"https://github.com/MeatYuan/MOS2"
"https://github.com/MeloLab/PhosphoinositideParameters"
"https://github.com/MembraneEnzymology/smdm"
"https://github.com/Merck/BioPhi"
"https://github.com/Merck/BioPhi-2021-publication"
"https://github.com/MetaCell/NEURON-UI"
"https://github.com/MetaCell/NetPyNE-UI"
"https://github.com/MetaCell/nwb-explorer"
"https://github.com/MetaSUB/CAP2"
"https://github.com/MetaSUB/MetaSUB-metadata"
"https://github.com/MetaSUB/main_paper_figures"
"https://github.com/MetaSUB/metasub_utils"
"https://github.com/MetabolicEngineeringGroupCBMA/Pereira_et_al_2022"
"https://github.com/MetabolicEngineeringGroupCBMA/Silva_et_al_2020"
"https://github.com/MichaelPHStumpf/Madness-Of-Crowds"
"https://github.com/MicronOxford/cockpit"
"https://github.com/MicrosoftResearch/Azimuth"
"https://github.com/MikkelSchubert/adapterremoval"
"https://github.com/MilesCranmer/bnn_chaos_model"
"https://github.com/MinaYounan-CS/ClRe"
"https://github.com/Mind-the-Pineapple/into-the-multiverse"
"https://github.com/Mind-the-Pineapple/sklearn-rvm"
"https://github.com/Mitogenie/Mito-Hacker"
"https://github.com/MobilityData/gbfs"
"https://github.com/MolSSI/covid"
"https://github.com/MolecularAI/MMP_project"
"https://github.com/MolecularAI/NonadditivityAnalysis"
"https://github.com/MolecularAI/Qptuna"
"https://github.com/MolecularAI/aizynthfinder"
"https://github.com/MolecularCartography/Optimus"
"https://github.com/MollySQuinn/Control_and_Valence_in_Unexpected_Events"
"https://github.com/Molmed/Krali-Palle_2021"
"https://github.com/MongoEngine/mongoengine"
"https://github.com/Mosquito-Alert/participation"
"https://github.com/MouseLand/Kilosort"
"https://github.com/MouseLand/cellpose"
"https://github.com/MouseLand/rastermap"
"https://github.com/MouseLand/suite2p"
"https://github.com/MozesBlom/NGSdata_tools"
"https://github.com/MultiplexDX/B117-RT-qPCR-design"
"https://github.com/Murali-group/PathLinker-Cytoscape"
"https://github.com/MuriloACassiano/papers-methodology"
"https://github.com/MurrellGroup/Rifraf.jl"
"https://github.com/MurrellGroup/Ty1"
"https://github.com/MurrellGroup/VOCfreq"
"https://github.com/NBCLab/abbr"
"https://github.com/NBCLab/athena"
"https://github.com/NBISweden/AGAT"
"https://github.com/NBISweden/contigtax"
"https://github.com/NCAR/PostProcessForecasts"
"https://github.com/NCAR/fields"
"https://github.com/NCBI-Hackathons/TheHumanPangenome"
"https://github.com/NCBI-Hackathons/VirusDiscoveryProject"
"https://github.com/NCBI-Hackathons/seqacademy"
"https://github.com/NCEAS/recordr"
"https://github.com/NCI-GDC/gdc-client"
"https://github.com/NDHall/coge_tools"
"https://github.com/NDHall/ggOrtho"
"https://github.com/NDHall/pysam_tools"
"https://github.com/NERC-CEH/datalab"
"https://github.com/NIB-SI/pISA-tree"
"https://github.com/NIB-SI/pISA-tree-assay-types"
"https://github.com/NIB-SI/pisar"
"https://github.com/NIB-SI/seekr"
"https://github.com/NIEHS/Machine-Learning-Pipeline"
"https://github.com/NIEHS/OPERA"
"https://github.com/NIEHS/SmartScope"
"https://github.com/NIRALUser/DTIPrep"
"https://github.com/NKI-CCB/DISCOVER"
"https://github.com/NKI-CCB/MixedIC50"
"https://github.com/NKI-CCB/PRECISE"
"https://github.com/NKI-CCB/TRANSACT"
"https://github.com/NKI-CCB/cnr"
"https://github.com/NKI-CCB/imfusion"
"https://github.com/NPLinker/nplinker"
"https://github.com/NPellet/visualizer"
"https://github.com/NREL/PV_ICE"
"https://github.com/NREL/alfabet"
"https://github.com/NREL/nfp"
"https://github.com/NREL/openstudio-standards"
"https://github.com/NRshka/stvae-source"
"https://github.com/NVIDIA-AI-IOT/jetcard"
"https://github.com/NVIDIA/nvidia-docker"
"https://github.com/NYU-DiffusionMRI/DESIGNER"
"https://github.com/NYUMedML/ObesityPY"
"https://github.com/NaegleLab/KinPred"
"https://github.com/NanoCommons/wgf-fairdata-analysis"
"https://github.com/Natarajanlab/Single-cell-regulatory-network"
"https://github.com/NathanSkene/EWCE"
"https://github.com/NaturalHistoryMuseum/gouda"
"https://github.com/NaturalHistoryMuseum/pyzbar"
"https://github.com/Nealelab/cloudtools"
"https://github.com/NervanaSystems/neon"
"https://github.com/Neubias-WG5/SubmitToBiaflows"
"https://github.com/Neubias-WG5/neubias-wg5.github.io"
"https://github.com/NeuralEnsemble/MotionClouds"
"https://github.com/NeuralEnsemble/elephant"
"https://github.com/NeuralEnsemble/neurotune"
"https://github.com/NeuralEnsemble/parameters"
"https://github.com/NeuralEnsemble/pype9"
"https://github.com/NeuralEnsemble/python-neo"
"https://github.com/NeuroML/NeuroMLlite"
"https://github.com/NeurodataWithoutBorders/matnwb"
"https://github.com/NeurodataWithoutBorders/nwb-schema"
"https://github.com/NeurodataWithoutBorders/nwbwidgets"
"https://github.com/NeurodataWithoutBorders/pynwb"
"https://github.com/Neuroinflab/PyMICE"
"https://github.com/Neuroinflab/PyMICE_SM"
"https://github.com/Neuroinflab/kCSD-python"
"https://github.com/Neuronal-Oscillations/FLUX"
"https://github.com/Neurosim-lab/NetPyNE-UI"
"https://github.com/Nevermore520/NeuronTools"
"https://github.com/NewsEye/NLP-Notebooks-Newspaper-Collections"
"https://github.com/NicholSchultz/FFselect"
"https://github.com/NicholasDominic/The-NucleoNets"
"https://github.com/NickleDave/NIH-Chest-X-Rays-Multi-Label-Image-Classification-In-Pytorch"
"https://github.com/NickleDave/Nicholson-Prinz-JOV-DNNs-bio-vis"
"https://github.com/NickleDave/searchstims"
"https://github.com/NickleDave/visual-search-nets"
"https://github.com/NiftyPET/NiftyPET"
"https://github.com/Nik-Zainal-Group/signature.tools.lib"
"https://github.com/Niloofar-Sh/EGFR_MAPK"
"https://github.com/NiltonVolpato/python-progressbar"
"https://github.com/Noufst/DeepScratch"
"https://github.com/Novartis/peax"
"https://github.com/NuriaQueralt/bioknowledge-reviewer"
"https://github.com/OAI/OpenAPI-Specification"