From d2a60607eab0c48e8bfdf82b10a3bf2aa4113e3d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sophia=20M=C3=A4dler?= <15019107+sophiamaedler@users.noreply.github.com> Date: Fri, 31 May 2024 14:37:20 +0200 Subject: [PATCH] add minimal example yml --- .github/workflows/environment.yml | 498 ++++++------------------------ 1 file changed, 95 insertions(+), 403 deletions(-) diff --git a/.github/workflows/environment.yml b/.github/workflows/environment.yml index 29be3eea..c19381b8 100644 --- a/.github/workflows/environment.yml +++ b/.github/workflows/environment.yml @@ -1,438 +1,130 @@ -name: SPARCSpy +name: SPARCSminimal channels: - - pytorch - - anaconda - conda-forge dependencies: - - alabaster=0.7.16=pyhd8ed1ab_0 - - aom=3.9.0=h537b5a7_0 - - appnope=0.1.2=py310hca03da5_1001 - - asciitree=0.3.3=py_2 - - asttokens=2.0.5=pyhd3eb1b0_0 - - atk-1.0=2.38.0=hd03087b_2 - - attrs=23.2.0=pyh71513ae_0 - - aws-c-auth=0.7.22=hec39e38_2 - - aws-c-cal=0.6.14=h5db4892_1 - - aws-c-common=0.9.19=h99b78c6_0 - - aws-c-compression=0.2.18=h5db4892_6 - - aws-c-event-stream=0.4.2=h5eab607_12 - - aws-c-http=0.8.1=had10953_17 - - aws-c-io=0.14.8=hb5a7b21_5 - - aws-c-mqtt=0.10.4=h78534b8_4 - - aws-c-s3=0.5.9=h1755d02_3 - - aws-c-sdkutils=0.1.16=h5db4892_2 - - aws-checksums=0.1.18=h5db4892_6 - - aws-crt-cpp=0.26.9=h03bff2b_0 - - aws-sdk-cpp=1.11.329=hb37a6d0_3 - - backcall=0.2.0=pyhd3eb1b0_0 - - beautifulsoup4=4.12.3=pyha770c72_0 - - bleach=6.1.0=pyhd8ed1ab_0 - - blessed=1.19.1=pyhe4f9e05_2 - - blosc=1.21.5=h9c252e8_1 - - bokeh=3.4.1=pyhd8ed1ab_0 - - brotli=1.1.0=hb547adb_1 - - brotli-bin=1.1.0=hb547adb_1 - - brotli-python=1.1.0=py310h1253130_1 - - brunsli=0.1=h9f76cd9_0 - - bzip2=1.0.8=h93a5062_5 - - c-ares=1.28.1=h93a5062_0 - - c-blosc2=2.14.4=ha57e6be_1 - - ca-certificates=2024.2.2=hf0a4a13_0 - - cairo=1.18.0=hd1e100b_0 - - cairomm-1.16=1.16.2=h136753c_1 - - cellpose=3.0.8=pyhd8ed1ab_0 - - certifi=2024.2.2=pyhd8ed1ab_0 - - cffi=1.16.0=py310hdcd7c05_0 - - charls=2.4.2=h13dd4ca_0 - - charset-normalizer=3.3.2=pyhd8ed1ab_0 - - click=8.1.7=unix_pyh707e725_0 - - cloudpickle=3.0.0=pyhd8ed1ab_0 - - colorama=0.4.6=pyhd8ed1ab_0 - - contourpy=1.2.1=py310h21239e6_0 - - cycler=0.12.1=pyhd8ed1ab_0 - - cytoolz=0.12.3=py310hd125d64_0 - - dask=2024.5.1=pyhd8ed1ab_0 - - dask-core=2024.5.1=pyhd8ed1ab_0 - - dask-expr=1.1.1=pyhd8ed1ab_1 - - dask-image=2024.5.3=pyhd8ed1ab_0 - - dav1d=1.2.1=hb547adb_0 - - debugpy=1.6.7=py310h313beb8_0 - - decorator=5.1.1=pyhd3eb1b0_0 - - defusedxml=0.7.1=pyhd8ed1ab_0 - - distributed=2024.5.1=pyhd8ed1ab_0 - - entrypoints=0.4=pyhd8ed1ab_0 - - epoxy=1.5.10=h1c322ee_1 - - exceptiongroup=1.0.4=py310hca03da5_0 - - executing=0.8.3=pyhd3eb1b0_0 - - expat=2.6.2=hebf3989_0 - - fastremap=1.14.0=py310he53c7d2_1 - - ffmpeg=6.1.1=gpl_hc16618e_112 - - filelock=3.14.0=pyhd8ed1ab_0 - - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - - font-ttf-inconsolata=3.000=h77eed37_0 - - font-ttf-source-code-pro=2.038=h77eed37_0 - - font-ttf-ubuntu=0.83=h77eed37_2 - - fontconfig=2.14.2=h82840c6_0 - - fonts-conda-ecosystem=1=0 - - fonts-conda-forge=1=0 - - fonttools=4.52.4=py310ha6dd24b_0 - - freetype=2.12.1=hadb7bae_2 - - fribidi=1.0.10=h27ca646_0 - - gdk-pixbuf=2.42.12=h7ddc832_0 - - gettext=0.22.5=h8fbad5d_2 - - gettext-tools=0.22.5=h8fbad5d_2 - - gflags=2.2.2=hc88da5d_1004 - - giflib=5.2.2=h93a5062_0 - - glib=2.80.2=h535f939_0 - - glib-tools=2.80.2=h4c882b9_0 - - glog=0.7.0=hc6770e3_0 - - gmp=6.3.0=hebf3989_1 - - gmpy2=2.1.5=py310h3bc658a_1 - - gnutls=3.7.9=hd26332c_0 - - graph-tool=2.68=py310h5b70238_1001 - - graph-tool-base=2.68=py310ha05df7a_1001 - - graphite2=1.3.13=hebf3989_1003 - - gst-plugins-base=1.24.4=h8a8f8c8_0 - - gstreamer=1.24.4=h430e707_0 - - gtk3=3.24.42=hcad41e0_0 - - harfbuzz=8.5.0=h1836168_0 - - hdf5=1.14.3=nompi_hec07895_102 - - hicolor-icon-theme=0.17=hce30654_2 - - icu=73.2=hc8870d7_0 - - idna=3.7=pyhd8ed1ab_0 - - imagecodecs=2024.1.1=py310hfb4dfaf_7 - - imageio=2.34.1=pyh4b66e23_0 - - imagesize=1.4.1=pyhd8ed1ab_0 - - imath=3.1.11=h1059232_0 - - importlib-metadata=7.1.0=pyha770c72_0 - - importlib_metadata=7.1.0=hd8ed1ab_0 - - importlib_resources=6.4.0=pyhd8ed1ab_0 - - ipykernel=6.25.0=py310h33ce5c2_0 - - ipython=8.15.0=py310hca03da5_0 - - jasper=4.2.4=h6c4e4ef_0 - - jedi=0.18.1=py310hca03da5_1 - - jinja2=3.1.4=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_0 - - jsonschema=4.22.0=pyhd8ed1ab_0 - - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 - - jupyter_client=8.6.0=py310hca03da5_0 - - jupyter_core=5.5.0=py310hca03da5_0 - - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1 - - jxrlib=1.1=h93a5062_3 - - kiwisolver=1.4.5=py310h38f39d4_1 - - krb5=1.21.2=h92f50d5_0 - - lame=3.100=h1a8c8d9_1003 - - lazy_loader=0.4=pyhd8ed1ab_0 - - lcms2=2.16=ha0e7c42_0 - - lerc=4.0.0=h9a09cb3_0 - - libabseil=20240116.2=cxx17_hebf3989_0 - - libaec=1.1.3=hebf3989_0 - - libarrow=16.1.0=h28dd788_6_cpu - - libarrow-acero=16.1.0=h00cdb27_6_cpu - - libarrow-dataset=16.1.0=h00cdb27_6_cpu - - libarrow-substrait=16.1.0=hc68f6b8_6_cpu - - libasprintf=0.22.5=h8fbad5d_2 - - libasprintf-devel=0.22.5=h8fbad5d_2 - - libass=0.17.1=hf7da4fe_1 - - libavif16=1.0.4=hb18d617_4 - - libblas=3.9.0=19_osxarm64_openblas - - libboost=1.82.0=h489e689_6 - - libboost-python=1.82.0=py310h0d5016b_6 - - libbrotlicommon=1.1.0=hb547adb_1 - - libbrotlidec=1.1.0=hb547adb_1 - - libbrotlienc=1.1.0=hb547adb_1 - - libcblas=3.9.0=19_osxarm64_openblas - - libclang-cpp15=15.0.7=default_he012953_5 - - libclang13=18.1.6=default_h174537c_0 - - libcrc32c=1.1.2=hbdafb3b_0 - - libcurl=8.8.0=h7b6f9a7_0 - - libcxx=17.0.6=h5f092b4_0 - - libdeflate=1.20=h93a5062_0 - - libedit=3.1.20191231=hc8eb9b7_2 - - libev=4.33=h93a5062_2 - - libevent=2.1.12=h2757513_1 - - libexpat=2.6.2=hebf3989_0 - - libffi=3.4.2=h3422bc3_5 - - libgettextpo=0.22.5=h8fbad5d_2 - - libgettextpo-devel=0.22.5=h8fbad5d_2 - - libgfortran=5.0.0=13_2_0_hd922786_3 - - libgfortran5=13.2.0=hf226fd6_3 - - libgirepository=1.80.1=hee7aab5_0 - - libglib=2.80.2=h535f939_0 - - libgoogle-cloud=2.24.0=hfe08963_0 - - libgoogle-cloud-storage=2.24.0=h3fa5b87_0 - - libgrpc=1.62.2=h9c18a4f_0 - - libhwloc=2.10.0=default_h7685b71_1001 - - libhwy=1.1.0=h2ffa867_0 - - libiconv=1.17=h0d3ecfb_2 - - libidn2=2.3.7=h93a5062_0 - - libintl=0.22.5=h8fbad5d_2 - - libintl-devel=0.22.5=h8fbad5d_2 - - libjpeg-turbo=3.0.0=hb547adb_1 - - libjxl=0.10.2=h07599a0_0 - - liblapack=3.9.0=19_osxarm64_openblas - - liblapacke=3.9.0=19_osxarm64_openblas - - libllvm14=14.0.6=hd1a9a77_4 - - libllvm15=15.0.7=h2621b3d_4 - - libllvm18=18.1.6=hdac5640_0 - - libnghttp2=1.58.0=ha4dd798_1 - - libogg=1.3.4=h27ca646_1 - - libopenblas=0.3.24=openmp_hd76b1f2_0 - - libopencv=4.9.0=headless_py310h76ded59_15 - - libopenvino=2024.1.0=h5c9529b_7 - - libopenvino-arm-cpu-plugin=2024.1.0=h5c9529b_7 - - libopenvino-auto-batch-plugin=2024.1.0=hcd65546_7 - - libopenvino-auto-plugin=2024.1.0=hcd65546_7 - - libopenvino-hetero-plugin=2024.1.0=h88cb26a_7 - - libopenvino-ir-frontend=2024.1.0=h88cb26a_7 - - libopenvino-onnx-frontend=2024.1.0=h32b5460_7 - - libopenvino-paddle-frontend=2024.1.0=h32b5460_7 - - libopenvino-pytorch-frontend=2024.1.0=h00cdb27_7 - - libopenvino-tensorflow-frontend=2024.1.0=h2741c3b_7 - - libopenvino-tensorflow-lite-frontend=2024.1.0=h00cdb27_7 - - libopus=1.3.1=h27ca646_1 - - libparquet=16.1.0=hcf52c46_6_cpu - - libpng=1.6.43=h091b4b1_0 - - libpq=16.3=h7afe498_0 - - libprotobuf=4.25.3=hbfab5d5_0 - - libre2-11=2023.09.01=h7b2c953_2 - - librsvg=2.58.0=hb3d354b_1 - - libsodium=1.0.18=h1a28f6b_0 - - libsqlite=3.45.3=h091b4b1_0 - - libssh2=1.11.0=h7a5bd25_0 - - libtasn1=4.19.0=h1a8c8d9_0 - - libthrift=0.19.0=h026a170_1 - - libtiff=4.6.0=h07db509_3 - - libunistring=0.9.10=h3422bc3_0 - - libutf8proc=2.8.0=h1a8c8d9_0 - - libvorbis=1.3.7=h9f76cd9_0 - - libvpx=1.14.0=h078ce10_0 - - libwebp-base=1.4.0=h93a5062_0 - - libxcb=1.15=hf346824_0 - - libxml2=2.12.7=ha661575_0 - - libzlib=1.2.13=hfb2fe0b_6 - - libzopfli=1.0.3=h9f76cd9_0 - - lightning-utilities=0.11.2=pyhd8ed1ab_0 - - llvm-openmp=18.1.6=hde57baf_0 - - llvmlite=0.42.0=py310hf7687f1_1 - - locket=1.0.0=pyhd8ed1ab_0 - - lz4=4.3.3=py310haecba8d_0 - - lz4-c=1.9.4=hb7217d7_0 - - mahotas=1.4.15=py310h2216879_1 - - markupsafe=2.1.5=py310hd125d64_0 - - matplotlib=3.8.4=py310hb6292c7_2 - - matplotlib-base=3.8.4=py310hedb7998_2 - - matplotlib-inline=0.1.6=py310hca03da5_0 - - mistune=3.0.2=pyhd8ed1ab_0 - - mpc=1.3.1=h91ba8db_0 - - mpfr=4.2.1=h41d338b_1 - - mpmath=1.3.0=pyhd8ed1ab_0 - - msgpack-python=1.0.8=py310he1a186f_0 - - munkres=1.1.4=pyh9f0ad1d_0 - - mysql-common=8.3.0=hd1853d3_4 - - mysql-libs=8.3.0=hf036fc4_4 - - natsort=8.4.0=pyhd8ed1ab_0 - - nbclient=0.10.0=pyhd8ed1ab_0 - - nbconvert=7.16.4=hd8ed1ab_0 - - nbconvert-core=7.16.4=pyhd8ed1ab_0 - - nbconvert-pandoc=7.16.4=hd8ed1ab_0 - - nbformat=5.10.4=pyhd8ed1ab_0 - - nbsphinx=0.9.4=pyhd8ed1ab_0 - - ncurses=6.5=hb89a1cb_0 - - nest-asyncio=1.5.6=py310hca03da5_0 - - nettle=3.9.1=h40ed0f5_0 - - networkx=3.3=pyhd8ed1ab_1 - - nspr=4.35=hb7217d7_0 - - nss=3.100=hc6e9f88_0 - - numba=0.59.1=py310hdf1f89a_0 - - numcodecs=0.12.1=py310hcf9f62a_1 - - numpy=1.26.4=py310hd45542a_0 - - opencv=4.9.0=headless_py310hf593829_15 - - openexr=3.2.2=h2c51e1d_1 - - openh264=2.4.1=hebf3989_0 - - openjdk=22.0.1=hbeb2e11_0 - - openjpeg=2.5.2=h9f1df11_0 - - openssl=3.3.0=hfb2fe0b_3 - - orc=2.0.1=h47ade37_1 - - p11-kit=0.24.1=h29577a5_0 - - packaging=24.0=pyhd8ed1ab_0 - - pandas=2.2.2=py310h2216879_1 - - pandoc=3.2=hce30654_0 - - pandocfilters=1.5.0=pyhd8ed1ab_0 - - pango=1.52.2=hb067d4f_0 - - parso=0.8.3=pyhd3eb1b0_0 - - partd=1.4.2=pyhd8ed1ab_0 - - pcre2=10.43=h26f9a81_0 - - pexpect=4.8.0=pyhd3eb1b0_3 - - pickleshare=0.7.5=pyhd3eb1b0_1003 - - pillow=10.3.0=py310h81a8c2e_0 - - pims=0.6.1=pyhd8ed1ab_1 - - pip=24.0=pyhd8ed1ab_0 - - pixman=0.43.4=hebf3989_0 - - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 - - platformdirs=3.10.0=py310hca03da5_0 - - ply=3.11=pyhd8ed1ab_2 - - prompt-toolkit=3.0.36=py310hca03da5_0 - - psutil=5.9.8=py310hd125d64_0 - - pthread-stubs=0.4=h27ca646_1001 - - ptyprocess=0.7.0=pyhd3eb1b0_2 - - pugixml=1.14=h13dd4ca_0 - - pure_eval=0.2.2=pyhd3eb1b0_0 - - py-opencv=4.9.0=headless_py310h1882dd7_15 - - pyarrow=16.1.0=py310h7ed268f_1 - - pyarrow-core=16.1.0=py310h75075a0_1_cpu - - pyarrow-hotfix=0.6=pyhd8ed1ab_0 - - pycairo=1.26.0=py310hea34faf_0 - - pyconify=0.1.6=pyhd8ed1ab_0 - - pycparser=2.22=pyhd8ed1ab_0 - - pygments=2.18.0=pyhd8ed1ab_0 - - pygobject=3.48.2=py310h5ffc74c_0 - - pyparsing=3.1.2=pyhd8ed1ab_0 - - pyqt=5.15.9=py310h2924129_5 - - pyqt5-sip=12.12.2=py310h1253130_5 - - pyqtgraph=0.13.7=pyhd8ed1ab_0 - - pysocks=1.7.1=pyha2e5f31_6 - - python=3.10.14=h2469fbe_0_cpython - - python-dateutil=2.9.0=pyhd8ed1ab_0 - - python-fastjsonschema=2.19.1=pyhd8ed1ab_0 - - python-tzdata=2024.1=pyhd8ed1ab_0 - - python_abi=3.10=4_cp310 - - pytorch=2.2.2=py3.10_0 - - pytorch-lightning=2.2.2=pyhd8ed1ab_0 - - pytz=2024.1=pyhd8ed1ab_0 - - pywavelets=1.4.1=py310h280b8fa_1 - - pyyaml=6.0.1=py310h2aa6e3c_1 - - pyzmq=25.1.0=py310h313beb8_0 - - qt-main=5.15.8=hf679f28_21 - - qtpy=2.4.1=pyhd8ed1ab_0 - - rav1e=0.6.6=h69fbcac_2 - - re2=2023.09.01=h4cba328_2 - - readline=8.2=h92ec313_1 - - referencing=0.35.1=pyhd8ed1ab_0 - - requests=2.32.3=pyhd8ed1ab_0 - - roifile=2024.5.24=pyhd8ed1ab_0 - - rpds-py=0.18.1=py310h947b723_0 - - scikit-image=0.19.3=py310h2b830bf_2 - - scikit-learn=1.5.0=py310h64e73be_1 - - scipy=1.13.1=py310h7057308_0 - - setuptools=70.0.0=pyhd8ed1ab_0 - - sigcpp-3.0=3.6.0=h13dd4ca_0 - - sip=6.8.3=py310h692a8b6_0 - - six=1.16.0=pyh6c4a22f_0 - - slicerator=1.1.0=pyhd8ed1ab_0 - - snappy=1.2.0=hd04f947_1 - - snowballstemmer=2.2.0=pyhd8ed1ab_0 - - sortedcontainers=2.4.0=pyhd8ed1ab_0 - - soupsieve=2.5=pyhd8ed1ab_1 - - sparsehash=2.0.4=hb7217d7_1 - - sphinx=7.3.7=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0 - - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0 - - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - - stack_data=0.2.0=pyhd3eb1b0_0 - - superqt=0.6.4=pyh9208f05_0 - - svt-av1=2.1.0=h7bae524_0 - - sympy=1.12=pypyh9d50eac_103 - - tbb=2021.12.0=h420ef59_1 - - tblib=3.0.0=pyhd8ed1ab_0 - - threadpoolctl=3.5.0=pyhc1e730c_0 - - tifffile=2024.5.22=pyhd8ed1ab_0 - - tinycss2=1.3.0=pyhd8ed1ab_0 - - tk=8.6.13=h5083fa2_1 - - toml=0.10.2=pyhd8ed1ab_0 - - tomli=2.0.1=pyhd8ed1ab_0 - - toolz=0.12.1=pyhd8ed1ab_0 - - torchaudio=2.2.2=py310_cpu - - torchmetrics=1.4.0.post0=pyhd8ed1ab_0 - - torchvision=0.17.2=py310_cpu - - tornado=6.4=py310hd125d64_0 - - tqdm=4.66.4=pyhd8ed1ab_0 - - traitlets=5.7.1=py310hca03da5_0 - - typing-extensions=4.11.0=hd8ed1ab_0 - - typing_extensions=4.11.0=pyha770c72_0 - - tzdata=2024a=h0c530f3_0 - - unicodedata2=15.1.0=py310h2aa6e3c_0 - - wcwidth=0.2.13=pyhd8ed1ab_0 - - webencodings=0.5.1=pyhd8ed1ab_2 - - wheel=0.43.0=pyhd8ed1ab_1 - - x264=1!164.3095=h57fd34a_2 - - x265=3.5=hbc6ce65_3 - - xorg-libxau=1.0.11=hb547adb_0 - - xorg-libxdmcp=1.1.3=h27ca646_0 - - xyzservices=2024.4.0=pyhd8ed1ab_0 - - xz=5.2.6=h57fd34a_0 - - yaml=0.2.5=h3422bc3_2 - - zeromq=4.3.4=hc377ac9_0 - - zfp=1.0.1=ha8f4885_0 - - zict=3.0.0=pyhd8ed1ab_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - zlib=1.2.13=hfb2fe0b_6 - - zlib-ng=2.0.7=h1a8c8d9_0 - - zstandard=0.19.0=py310h8e9501a_0 - - zstd=1.5.6=hb46c0d2_0 + - bzip2 + - ca-certificates=2024.2.2 + - libffi=3.4.2 + - libsqlite=3.45.3 + - libzlib=1.2.13 + - ncurses=6.5 + - openssl=3.3.0 + - pip=24.0 + - python=3.10.14 + - readline=8.2 + - setuptools + - tk=8.6.13 + - wheel=0.43.0 + - xz=5.2.6 - pip: - affine==2.4.0 - aicspylibczi==3.1.2 - - aiobotocore==2.5.4 + - aiobotocore==2.13.0 - aiohttp==3.9.5 - aioitertools==0.11.0 - aiosignal==1.3.1 - alphabase==1.2.4 - - annotated-types==0.7.0 - - ashlar==1.18.0 + - asciitree==0.3.3 - async-timeout==4.0.3 - - babel==2.15.0 + - attrs==23.2.0 - biopython==1.83 - - botocore==1.31.17 + - botocore==1.34.106 + - cellpose==3.0.8 + - certifi==2024.2.2 + - charset-normalizer==3.3.2 + - click==8.1.7 - click-plugins==1.1.1 - cligj==0.7.2 - - comm==0.2.2 + - cloudpickle==3.0.0 + - colorama==0.4.6 - contextlib2==21.6.0 - - docutils==0.18.1 - - elementpath==4.4.0 + - contourpy==1.2.1 + - cycler==0.12.1 + - dask==2024.5.1 + - dask-expr==1.1.1 + - distributed==2024.5.1 - fasteners==0.19 + - fastremap==1.14.1 + - filelock==3.14.0 + - fonttools==4.52.4 - frozenlist==1.4.1 - - fsspec==2023.6.0 + - fsspec==2024.5.0 - h5py==3.11.0 - hilbertcurve==2.0.5 - - ipywidgets==8.1.3 + - idna==3.7 + - imagecodecs==2024.1.1 + - imageio==2.34.1 + - imagesize==1.4.1 + - importlib-metadata==7.1.0 + - jinja2==3.1.4 - jmespath==1.0.1 - - jupyterlab-widgets==3.0.11 - - lxml==4.9.4 + - joblib==1.4.2 + - kiwisolver==1.4.5 + - lazy-loader==0.4 + - lightning-utilities==0.11.2 + - llvmlite==0.42.0 + - locket==1.0.0 + - lxml==5.2.2 + - mahotas==1.4.15 + - markupsafe==2.1.5 + - matplotlib==3.9.0 + - mpmath==1.3.0 + - msgpack==1.0.8 - multidict==6.0.5 - - ome-types==0.5.1.post1 + - natsort==8.4.0 + - networkx==3.3 + - numba==0.59.1 + - numcodecs==0.12.1 + - numpy==1.26.4 - ome-zarr==0.9.0 + - opencv-python==4.9.0.80 + - opencv-python-headless==4.9.0.80 + - packaging==24.0 + - pandas==2.2.2 + - partd==1.4.2 + - pillow==10.3.0 + - psutil==5.9.8 - py-lmd==1.0.0 - pyahocorasick==2.1.0 - - pydantic==2.7.2 - - pydantic-compat==0.1.2 - - pydantic-core==2.18.3 - - pyjnius==1.6.1 + - pyarrow==16.1.0 + - pyparsing==3.1.2 - pyteomics==4.7.2 + - python-dateutil==2.9.0.post0 + - pytorch-lightning==2.2.5 + - pytz==2024.1 + - pyyaml==6.0.1 - rasterio==1.3.10 - regex==2024.5.15 - - renku-sphinx-theme==0.4.0 - - resource-backed-dask-array==0.1.0 - - s3fs==2023.6.0 + - requests==2.32.3 + - roifile==2024.5.24 + - s3fs==2024.5.0 - scikit-fmm==2024.5.29 - - seaborn==0.13.2 + - scikit-image==0.23.2 + - scikit-learn==1.5.0 + - scipy==1.13.1 - shapely==2.0.4 + - six==1.16.0 - snuggs==1.4.7 - - sphinx-argparse==0.4.0 - - sphinx-rtd-theme==1.3.0 - - sphinxcontrib-jquery==4.1 + - sortedcontainers==2.4.0 + - sparcscore==1.0.0 - svgelements==1.9.6 + - sympy==1.12.1 - tabulate==0.9.0 - - urllib3==1.26.18 - - widgetsnbextension==4.0.11 + - tblib==3.0.0 + - threadpoolctl==3.5.0 + - tifffile==2024.5.22 + - toolz==0.12.1 + - torch==2.3.0 + - torchmetrics==1.4.0.post0 + - torchvision==0.18.0 + - tornado==6.4 + - tqdm==4.66.4 + - typing-extensions==4.12.0 + - tzdata==2024.1 + - urllib3==2.2.1 - wrapt==1.16.0 - - xarray==2024.5.0 - - xmlschema==3.3.1 - - xsdata==24.3.1 - xxhash==3.4.1 - yarl==1.9.4 - - yattag==1.15.2 - - zarr==2.15.0 + - zarr==2.18.2 + - zict==3.0.0 + - zipp==3.19.0 \ No newline at end of file