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Copy pathAtributen 8.0B.py
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Atributen 8.0B.py
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import os
import re
def super_lijst_maken():
file1 = open("Genes_relation.data.txt", "r")
alle_regels = file1.readlines()
file1.close()
PATTERN = re.compile(r'''((?:[^,"']|"[^"]*"|'[^']*')+)''')
super_lijst = [[], [], [], [], [], [], [], [], []]
for regel in alle_regels:
gesplitte_regel = PATTERN.split(regel.rstrip(".\r\n"))[1::2]
for i in range(0, 9):
if gesplitte_regel[i] != "?" and gesplitte_regel[i] != "Unknown":
super_lijst[i].append(gesplitte_regel[i])
super_lijst[i] = list(set(super_lijst[i]))
super_lijst[0] = ["label"]
return super_lijst
def leuke_header_maken(super_lijst) :
string_header = ""
string_header2 = ""
for i in range(len(super_lijst)-1):
for x in super_lijst[i]:
string_header += x+","
string_header += "locatie,"
for x in header2():
string_header2 += "Interactie met: " + x + "," + x + " correlatie coefficient" + ","
string_header = string_header + string_header2
string_header = string_header.rstrip(",")
string_header += "\n"
return string_header
def header2():
with open('Genes_relation.data.txt', 'rw') as file:
genlijst = []
for line in file:
genlijst.append(line.split(",")[0])
genlijst = set(genlijst)
return genlijst
def interacties():
dict = {}
with open('Interactions_relation.data.txt', 'rw') as file, open('Interactions_relation.names.inverted.txt', 'rw') as file2:
filelijst =[file.readlines(), file2.readlines()]
for x in filelijst:
for i in x:
try:
dict[i.rstrip(".\r\n").split(",")[0]] += [i.rstrip(".\r\n").split(",")[1:4]]
except KeyError:
dict[i.rstrip(".\r\n").split(",")[0]] = [i.rstrip(".\r\n").split(",")[1:4]]
return dict
def functie_1(super_lijst,header):
file1 = open("Genes_relation.data.txt","r")
alle_regels = file1.readlines()
file1.close()
dict = interacties()
super_file = open("uber_file.csv","w")
super_file.write(header)
eerste_gen = alle_regels[0]
PATTERN = re.compile(r'''((?:[^,"']|"[^"]*"|'[^']*')+)''')
eerste_gen = PATTERN.split(eerste_gen.rstrip(".\r\n"))[1::2]
lijst_van_al = [[],[],[],[],[],[],[],[],[]]
alle_regels.append(12 * " ,")
for regel in alle_regels:
gesplitte_regel = PATTERN.split(regel.rstrip(".\r\n"))[1::2]
if eerste_gen[0] != regel.split(",")[0]:
toevoeg_string = eerste_gen[0]
for lijst_nummer in range(1, 8):
for sl_woord in super_lijst[lijst_nummer]:
for kaas in lijst_van_al[lijst_nummer]:
ja = False
if sl_woord == kaas:
ja = True
break
elif kaas == "?":
ja = "niet_chill"
break
if ja == True:
toevoeg_string += ",True"
elif ja == False:
toevoeg_string += ",False"
else:
toevoeg_string += ",?"
toevoeg_string += ","+lijst_van_al[-1][0]
for genid in lijst_van_al[0]:
try:
for id in header2():
for matchedmet in dict[genid]:
if id == matchedmet[0]:
toevoeg_string += ",True" + "," + str(matchedmet[2])
else:
toevoeg_string += ",False" + ",0"
except KeyError:
for id in header2():
toevoeg_string += ",False" + ",0"
toevoeg_string += "\n"
super_file.write(toevoeg_string)
eerste_gen = gesplitte_regel
lijst_van_al = [[],[], [], [], [], [], [], [], []]
for i in range(0, 9):
lijst_van_al[i].append(gesplitte_regel[i])
lijst_van_al[i] = list(set(lijst_van_al[i]))
super_file.close()
def main():
os.system("""cat Interactions_relation.data.txt | awk -F ',' '{print $2, "," $1, ",", $3, ",", $4}' | tr -d ' ' > Interactions_relation.names.inverted.txt""")
super_lijst = super_lijst_maken()
header = leuke_header_maken(super_lijst)
functie_1(super_lijst,header)
main()