Fixes to allow macOS 14/15 to run #985
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: mcxtrace-basictest | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '55 23 * * 0' # 23:55 every Sunday | |
| workflow_dispatch: | |
| inputs: | |
| manual-debugging: | |
| type: boolean | |
| description: Launch manual debugging tmate for inspection (automatic in case of errors) | |
| default: false | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { os: ubuntu-20.04, CC: gcc-10, CXX: g++-10, python: '3.8' } | |
| - { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.9' } | |
| - { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.10' } | |
| - { os: ubuntu-22.04, CC: clang, CXX: clang++, python: '3.11' } | |
| - { os: ubuntu-22.04, CC: gcc-12, CXX: g++-12, python: '3.11' } | |
| - { os: macos-13, CC: clang, CXX: clang++, python: "3.11" } | |
| # - { os: macos-14, CC: clang, CXX: clang++, python: "3.11" } | |
| # - { os: macos-15, CC: clang, CXX: clang++, python: "3.11" } | |
| - { os: windows-latest, CC: gcc, CXX: g++, python: "3.11" } | |
| name: ${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: src | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup Bison (macOS) | |
| id: setup-flex-bison-macos | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install bison flex | |
| - name: Setup Bison (Windows) | |
| id: setup-flex-bison-Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install winflexbison3 | |
| pip install mslex | |
| - name: Setup OpenMPI (Linux) | |
| id: setup-openmpi-linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt -y install libopenmpi-dev | |
| - name: Setup OpenMPI (macOS-12,13) | |
| id: setup-openmpi-macos12 | |
| if: runner.os == 'macOS' && matrix.os != 'macos-11' | |
| run: | | |
| brew install openmpi | |
| - name: Check versions | |
| id: version-checks | |
| run: | | |
| which python3 | |
| python3 --version | |
| which cmake | |
| cmake --version | |
| #NB: bison and flex in path are actually too old, on mac we | |
| #inject these via a brew keg later | |
| - name: Configure build and install mcxtrace | |
| id: mcxtrace-install | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then export SDKROOT=$(xcrun --sdk macosx --show-sdk-path); fi | |
| set -e | |
| set -u | |
| set -x | |
| mkdir build_mcxtrace | |
| cd build_mcxtrace | |
| export EXTRA_ARGS_FOR_CMAKE="" | |
| if [ "$RUNNER_OS" == "macOS" ]; then export EXTRA_ARGS_FOR_CMAKE="-DBISON_EXECUTABLE=/usr/local/opt/bison/bin/bison -DFLEX_EXECUTABLE=/usr/local/opt/flex/bin/flex"; fi | |
| if [ "$RUNNER_OS" == "Linux" ]; then export EXTRA_ARGS_FOR_CMAKE="-DNEXUSLIB=/usr/lib -DNEXUSINCLUDE=/usr/include/nexus"; fi | |
| cmake \ | |
| -DCMAKE_INSTALL_PREFIX=../install_mcxtrace \ | |
| -S ../src \ | |
| -G "Unix Makefiles" \ | |
| -DMCVERSION="3.99.99" \ | |
| -DMCCODE_BUILD_CONDA_PKG=ON \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DCMAKE_INSTALL_LIBDIR=lib \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_MCXTRACE=ON \ | |
| -DMCCODE_USE_LEGACY_DESTINATIONS=OFF \ | |
| -DBUILD_TOOLS=ON \ | |
| -DENABLE_COMPONENTS=ON \ | |
| -DENSURE_MCPL=ON \ | |
| -DENSURE_NCRYSTAL=OFF \ | |
| -DENABLE_CIF2HKL=OFF \ | |
| ${EXTRA_ARGS_FOR_CMAKE} | |
| cmake --build . --config Release | |
| cmake --build . --target install --config Release | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f "../install_mcxtrace/bin/${MCXTRACE_EXECUTABLE}" | |
| test -f "../install_mcxtrace/bin/${MXRUN_EXECUTABLE}" | |
| test -f "../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/__init__.py" | |
| test -d "../install_mcxtrace/share/mcxtrace/resources/data" | |
| echo ******************************************************************************* | |
| echo Resulting mccode_config.json: | |
| echo ******************************************************************************* | |
| cat ../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/mccode_config.json | |
| echo ******************************************************************************* | |
| - name: Pip install various | |
| id: pip-install | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| python3 -mpip install PyYAML ply McStasscript | |
| - name: Launch JJ_SAXS instrument | |
| id: JJ_SAXS-basic | |
| # Status: Works on all systems | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_JJ_SAXS && cd run_JJ_SAXS | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/SAXSLAB/JJ_SAXS/JJ_SAXS.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| ../install_mcxtrace/bin/${MCXTRACE_PYGEN_EXECUTABLE} JJ_SAXS.instr | |
| - name: Launch JJ_SAXS instrument (MPI) | |
| id: JJ_SAXS-mpi | |
| if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_JJ_SAXS_mpi && cd run_JJ_SAXS_mpi | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/SAXSLAB/JJ_SAXS/JJ_SAXS.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} --mpi=2 JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| - name: Launch MCPL test instrument | |
| id: mcpl-test | |
| if: runner.os == 'Linux' || runner.os == 'macOS' # Linux or macOS only | |
| # Status: Works on Unixes ("wrapper batches missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_Test_MCPL_input && cd run_Test_MCPL_input | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/Tests/Test_MCPL_input/Test_MCPL_input.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} Test_MCPL_input.instr repeat=10 | |
| - name: Launch MCPL test instrument (MPI) | |
| id: mcpl-test-mpi | |
| if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only | |
| # Status: Works on Unixes ("wrapper batches missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_Test_MCPL_input_mpi && cd run_Test_MCPL_input_mpi | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/Tests/Test_MCPL_input/Test_MCPL_input.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} --mpi=2 Test_MCPL_input.instr repeat=20 | |
| - name: 'Tar output files' | |
| id: tar-package | |
| if: always() | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| tar cvfz mcxtrace-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz run_* | |
| - name: 'Upload Artifact' | |
| id: tar-upload | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: mcxtrace-artefacts-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }} | |
| path: "mcxtrace-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz" | |
| - name: Setup tmate session for manual debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: always() && (inputs.manual-debugging == true && steps.tar-package.outcome != 'success') | |
| with: | |
| limit-access-to-actor: true |