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afni_proc.sh
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#!/bin/tcsh
afni_proc.py \
-subj_id sub-01 \
-dsets sub-01/sub-01_func_sub-01_task-affect_run-*_bold.nii\
-copy_anat sub-01/sub-01_anat_sub-01_T1w.nii \
-blocks tshift align tlrc volreg blur mask scale regress \
-align_opts_aea -cost lpc+ZZ -giant_move -check_flip \
-tlrc_base MNI152_T1_2009c+tlrc \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-mask_epi_anat yes \
-blur_size 4 \
-blur_in_automask \
-regress_stim_times sub-01/AFNI_timing.times.*.txt \
-regress_stim_labels VpAp VpAn VnAp VnAn catch \
-regress_basis 'BLOCK(3,1)' \
-regress_opts_3dD -jobs 2 -gltsym 'SYM: VpAp -VnAn' \
-glt_label 1 P-N \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.05 \
-regress_3dD_stop \
-regress_reml_exec \
-regress_compute_fitts \
-regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits \
-regress_est_blur_errts \
-regress_run_clustsim no \
-html_review_style basic \
-execute