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Running one Kilosort 4 session for two days and sometimes even crashed #737
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Hello @ZhongRenNeuroscience, That recording is not too big at all, it should only take two or three hours to sort with a decent GPU (like a geforce 3000 or 4000 series). A few questions for you:
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Hello, Thanks for your reply. Here are the answers to your questions:
Looking forward to your reply. Thank you! |
Okay, there are a few things that might be related:
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Describe the issue:
Hi, I have a problem that Kilosort 4 takes quite long time to sort one session. Sometimes even crashed.
I recorded the data with Neuropixel V2.0-OpenEphys lasting one and half to two hours for each session. I tried Kilosort 4.0.5 and the newest version 4.0.13. For the same session, I firstly run the whole session and then Kilosort 4 crashed at certain time point (see log file 1
kilosort4.log
). Then I updated Kilosort, and then run half of the same recording session. It can run well, but it takes me two days (see log file 2
kilosort4.log
). I know that my recording is a little bit too big. But I would like to know whether there is solusion for this problem. Thank you very much!
Reproduce the bug:
No response
Error message:
No response
Version information:
Python 3.11
Kilosort4.0.5 and 4.0.13
Windows10
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