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[FEATURE] Training Cellpose models in napari #53

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YitengDang opened this issue Jul 15, 2024 · 2 comments
Open

[FEATURE] Training Cellpose models in napari #53

YitengDang opened this issue Jul 15, 2024 · 2 comments
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enhancement New feature or request

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@YitengDang
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I'd like to train a Cellpose model on own data and was wondering whether it would be possible to do this in napari rather than using the Cellpose GUI. I would benefit from the visualisation options in napari (especially for adjusting brightness/contrast and dealing with image stacks with time) as well as the ability to label individual pixels rather than draw circles around cells. The cellpose-napari plugin doesn't seem to offer training options, and I was wondering if there is either a workaround or future plans to incorporate training into the plugin?

@carsen-stringer
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this is on the to-do list!

@carsen-stringer carsen-stringer changed the title Training Cellpose models in napari [FEATURE] Training Cellpose models in napari Sep 13, 2024
@carsen-stringer carsen-stringer added the enhancement New feature or request label Sep 13, 2024
@lopollar
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Hi, I would also be really interested in this feature. Is there a workaround now that we can draw the shapes in napari and load them up somewhere else?

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