From 06571f002739c392fcebb1f841c6551f612cb6c9 Mon Sep 17 00:00:00 2001
From: Mudassir Chapra <37051110+muddi900@users.noreply.github.com>
Date: Thu, 15 Aug 2024 18:11:54 +0500
Subject: [PATCH] Remove all redundant `music_box_` from file names and updated
 references [Issue #177] (#180)

* Remove all redundant `music_box_` from file names and updated references [Issue #177]

* correcting relative imports

* correcting more imports

* renaming executable

---------

Co-authored-by: Kyle Shores <kyle.shores44@gmail.com>
---
 pyproject.toml                                |  2 +-
 src/acom_music_box/__init__.py                | 20 ++++++++--------
 ...{music_box_conditions.py => conditions.py} | 11 ++++++---
 ...g_conditions.py => evolving_conditions.py} |  6 ++---
 .../{music_box_main.py => main.py}            |  0
 ..._box_model_options.py => model_options.py} |  0
 src/acom_music_box/music_box.py               | 23 ++++++++++++++-----
 .../{music_box_product.py => product.py}      |  0
 .../{music_box_reactant.py => reactant.py}    |  0
 .../{music_box_reaction.py => reaction.py}    |  0
 ..._box_reaction_list.py => reaction_list.py} |  6 ++---
 ..._box_reaction_rate.py => reaction_rate.py} |  0
 .../{music_box_species.py => species.py}      |  0
 ...centration.py => species_concentration.py} |  0
 ...ic_box_species_list.py => species_list.py} |  2 +-
 15 files changed, 43 insertions(+), 27 deletions(-)
 rename src/acom_music_box/{music_box_conditions.py => conditions.py} (97%)
 rename src/acom_music_box/{music_box_evolving_conditions.py => evolving_conditions.py} (98%)
 rename src/acom_music_box/{music_box_main.py => main.py} (100%)
 rename src/acom_music_box/{music_box_model_options.py => model_options.py} (100%)
 rename src/acom_music_box/{music_box_product.py => product.py} (100%)
 rename src/acom_music_box/{music_box_reactant.py => reactant.py} (100%)
 rename src/acom_music_box/{music_box_reaction.py => reaction.py} (100%)
 rename src/acom_music_box/{music_box_reaction_list.py => reaction_list.py} (98%)
 rename src/acom_music_box/{music_box_reaction_rate.py => reaction_rate.py} (100%)
 rename src/acom_music_box/{music_box_species.py => species.py} (100%)
 rename src/acom_music_box/{music_box_species_concentration.py => species_concentration.py} (100%)
 rename src/acom_music_box/{music_box_species_list.py => species_list.py} (99%)

diff --git a/pyproject.toml b/pyproject.toml
index 79d6feeb..bb75bd54 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -28,4 +28,4 @@ dependencies = [
 Home = "https://github.com/NCAR/music-box"
 
 [project.scripts]
-music_box = "acom_music_box.music_box_main:main"
+music_box = "acom_music_box.main:main"
diff --git a/src/acom_music_box/__init__.py b/src/acom_music_box/__init__.py
index b8f042a5..21af2747 100644
--- a/src/acom_music_box/__init__.py
+++ b/src/acom_music_box/__init__.py
@@ -7,15 +7,15 @@
 __version__ = "2.1.5"
 
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species import Species
-from .music_box_product import Product
-from .music_box_reactant import Reactant
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
-from .music_box_conditions import Conditions
+from .species import Species
+from .product import Product
+from .reactant import Reactant
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .species_list import SpeciesList
+from .model_options import BoxModelOptions
+from .species_concentration import SpeciesConcentration
+from .reaction_rate import ReactionRate
+from .conditions import Conditions
 
-from .music_box_evolving_conditions import EvolvingConditions
+from .evolving_conditions import EvolvingConditions
 from .music_box import MusicBox
diff --git a/src/acom_music_box/music_box_conditions.py b/src/acom_music_box/conditions.py
similarity index 97%
rename from src/acom_music_box/music_box_conditions.py
rename to src/acom_music_box/conditions.py
index 8ece10a2..f5c239c8 100644
--- a/src/acom_music_box/music_box_conditions.py
+++ b/src/acom_music_box/conditions.py
@@ -1,10 +1,15 @@
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_species import Species
-from .music_box_reaction_rate import ReactionRate
+from .species_concentration import SpeciesConcentration
+from .species import Species
+from .reaction_rate import ReactionRate
 from typing import List
 import csv
 import os
+from typing import List
+from .reaction_rate import ReactionRate
+from .species import Species
+from .species_concentration import SpeciesConcentration
+from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
 
 import logging
 logger = logging.getLogger(__name__)
diff --git a/src/acom_music_box/music_box_evolving_conditions.py b/src/acom_music_box/evolving_conditions.py
similarity index 98%
rename from src/acom_music_box/music_box_evolving_conditions.py
rename to src/acom_music_box/evolving_conditions.py
index 0c7da184..589f4337 100644
--- a/src/acom_music_box/music_box_evolving_conditions.py
+++ b/src/acom_music_box/evolving_conditions.py
@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_conditions import Conditions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
+from .conditions import Conditions
+from .species_concentration import SpeciesConcentration
+from .reaction_rate import ReactionRate
 
 
 class EvolvingConditions:
diff --git a/src/acom_music_box/music_box_main.py b/src/acom_music_box/main.py
similarity index 100%
rename from src/acom_music_box/music_box_main.py
rename to src/acom_music_box/main.py
diff --git a/src/acom_music_box/music_box_model_options.py b/src/acom_music_box/model_options.py
similarity index 100%
rename from src/acom_music_box/music_box_model_options.py
rename to src/acom_music_box/model_options.py
diff --git a/src/acom_music_box/music_box.py b/src/acom_music_box/music_box.py
index 1cef19b5..f058368b 100644
--- a/src/acom_music_box/music_box.py
+++ b/src/acom_music_box/music_box.py
@@ -1,17 +1,28 @@
 import musica
 import csv
-from .music_box_conditions import Conditions
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_list import SpeciesList
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reaction_list import ReactionList
-from .music_box_evolving_conditions import EvolvingConditions
+from .conditions import Conditions
+from .model_options import BoxModelOptions
+from .species_list import SpeciesList
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .reaction_list import ReactionList
+from .evolving_conditions import EvolvingConditions
 import json
 import os
 
 import logging
 logger = logging.getLogger(__name__)
 
+from .evolving_conditions import EvolvingConditions
+from .reaction_list import ReactionList
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .species_list import SpeciesList
+from .model_options import BoxModelOptions
+from .conditions import Conditions
+
+import csv
+import musica
+
+
 
 class MusicBox:
     """
diff --git a/src/acom_music_box/music_box_product.py b/src/acom_music_box/product.py
similarity index 100%
rename from src/acom_music_box/music_box_product.py
rename to src/acom_music_box/product.py
diff --git a/src/acom_music_box/music_box_reactant.py b/src/acom_music_box/reactant.py
similarity index 100%
rename from src/acom_music_box/music_box_reactant.py
rename to src/acom_music_box/reactant.py
diff --git a/src/acom_music_box/music_box_reaction.py b/src/acom_music_box/reaction.py
similarity index 100%
rename from src/acom_music_box/music_box_reaction.py
rename to src/acom_music_box/reaction.py
diff --git a/src/acom_music_box/music_box_reaction_list.py b/src/acom_music_box/reaction_list.py
similarity index 98%
rename from src/acom_music_box/music_box_reaction_list.py
rename to src/acom_music_box/reaction_list.py
index 78f54cfc..247e279a 100644
--- a/src/acom_music_box/music_box_reaction_list.py
+++ b/src/acom_music_box/reaction_list.py
@@ -1,9 +1,9 @@
 import os
 import json
 from typing import List
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reactant import Reactant
-from .music_box_product import Product
+from .reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from .reactant import Reactant
+from .product import Product
 
 import logging
 logger = logging.getLogger(__name__)
diff --git a/src/acom_music_box/music_box_reaction_rate.py b/src/acom_music_box/reaction_rate.py
similarity index 100%
rename from src/acom_music_box/music_box_reaction_rate.py
rename to src/acom_music_box/reaction_rate.py
diff --git a/src/acom_music_box/music_box_species.py b/src/acom_music_box/species.py
similarity index 100%
rename from src/acom_music_box/music_box_species.py
rename to src/acom_music_box/species.py
diff --git a/src/acom_music_box/music_box_species_concentration.py b/src/acom_music_box/species_concentration.py
similarity index 100%
rename from src/acom_music_box/music_box_species_concentration.py
rename to src/acom_music_box/species_concentration.py
diff --git a/src/acom_music_box/music_box_species_list.py b/src/acom_music_box/species_list.py
similarity index 99%
rename from src/acom_music_box/music_box_species_list.py
rename to src/acom_music_box/species_list.py
index 67142a4d..4d815d53 100644
--- a/src/acom_music_box/music_box_species_list.py
+++ b/src/acom_music_box/species_list.py
@@ -1,7 +1,7 @@
 import json
 import os
 from typing import List
-from .music_box_species import Species
+from .species import Species
 
 
 class SpeciesList: