From a5a0e2c7268805121fd83a6d93616845e9320524 Mon Sep 17 00:00:00 2001
From: Mudassir Chapra <muddi900@gmail.com>
Date: Fri, 9 Aug 2024 18:34:19 +0500
Subject: [PATCH] Remove all redundant `music_box_` from file names and updated
 references [Issue #177]

---
 src/acom_music_box/__init__.py                | 20 +++++++++----------
 ...{music_box_conditions.py => conditions.py} |  6 +++---
 ...g_conditions.py => evolving_conditions.py} |  6 +++---
 .../{music_box_main.py => main.py}            |  0
 ..._box_model_options.py => model_options.py} |  0
 src/acom_music_box/music_box.py               | 12 +++++------
 .../{music_box_product.py => product.py}      |  0
 .../{music_box_reactant.py => reactant.py}    |  0
 .../{music_box_reaction.py => reaction.py}    |  0
 ..._box_reaction_list.py => reaction_list.py} |  6 +++---
 ..._box_reaction_rate.py => reaction_rate.py} |  0
 .../{music_box_species.py => species.py}      |  0
 ...centration.py => species_concentration.py} |  0
 ...ic_box_species_list.py => species_list.py} |  2 +-
 14 files changed, 26 insertions(+), 26 deletions(-)
 rename src/acom_music_box/{music_box_conditions.py => conditions.py} (98%)
 rename src/acom_music_box/{music_box_evolving_conditions.py => evolving_conditions.py} (98%)
 rename src/acom_music_box/{music_box_main.py => main.py} (100%)
 rename src/acom_music_box/{music_box_model_options.py => model_options.py} (100%)
 rename src/acom_music_box/{music_box_product.py => product.py} (100%)
 rename src/acom_music_box/{music_box_reactant.py => reactant.py} (100%)
 rename src/acom_music_box/{music_box_reaction.py => reaction.py} (100%)
 rename src/acom_music_box/{music_box_reaction_list.py => reaction_list.py} (98%)
 rename src/acom_music_box/{music_box_reaction_rate.py => reaction_rate.py} (100%)
 rename src/acom_music_box/{music_box_species.py => species.py} (100%)
 rename src/acom_music_box/{music_box_species_concentration.py => species_concentration.py} (100%)
 rename src/acom_music_box/{music_box_species_list.py => species_list.py} (99%)

diff --git a/src/acom_music_box/__init__.py b/src/acom_music_box/__init__.py
index 17fdbe40..dbd9ac28 100644
--- a/src/acom_music_box/__init__.py
+++ b/src/acom_music_box/__init__.py
@@ -7,16 +7,16 @@
 __version__ = "2.1.1"
 
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
-from .music_box_species import Species
-from .music_box_product import Product
-from .music_box_reactant import Reactant
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
-from .music_box_conditions import Conditions
+from species import Species
+from product import Product
+from reactant import Reactant
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from species_list import SpeciesList
+from model_options import BoxModelOptions
+from species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
+from conditions import Conditions
 
-from .music_box_evolving_conditions import EvolvingConditions
+from evolving_conditions import EvolvingConditions
 from .music_box import MusicBox
 
diff --git a/src/acom_music_box/music_box_conditions.py b/src/acom_music_box/conditions.py
similarity index 98%
rename from src/acom_music_box/music_box_conditions.py
rename to src/acom_music_box/conditions.py
index 73c8ba0f..12377c71 100644
--- a/src/acom_music_box/music_box_conditions.py
+++ b/src/acom_music_box/conditions.py
@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_reaction_rate import ReactionRate
-from .music_box_species import Species
-from .music_box_species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
+from species import Species
+from species_concentration import SpeciesConcentration
 from .utils import convert_time, convert_pressure, convert_temperature, convert_concentration
 
 
diff --git a/src/acom_music_box/music_box_evolving_conditions.py b/src/acom_music_box/evolving_conditions.py
similarity index 98%
rename from src/acom_music_box/music_box_evolving_conditions.py
rename to src/acom_music_box/evolving_conditions.py
index a6a90777..8a8a0196 100644
--- a/src/acom_music_box/music_box_evolving_conditions.py
+++ b/src/acom_music_box/evolving_conditions.py
@@ -1,9 +1,9 @@
 import csv
 import os
 from typing import List
-from .music_box_conditions import Conditions
-from .music_box_species_concentration import SpeciesConcentration
-from .music_box_reaction_rate import ReactionRate
+from conditions import Conditions
+from species_concentration import SpeciesConcentration
+from reaction_rate import ReactionRate
 
 
 class EvolvingConditions:
diff --git a/src/acom_music_box/music_box_main.py b/src/acom_music_box/main.py
similarity index 100%
rename from src/acom_music_box/music_box_main.py
rename to src/acom_music_box/main.py
diff --git a/src/acom_music_box/music_box_model_options.py b/src/acom_music_box/model_options.py
similarity index 100%
rename from src/acom_music_box/music_box_model_options.py
rename to src/acom_music_box/model_options.py
diff --git a/src/acom_music_box/music_box.py b/src/acom_music_box/music_box.py
index e1378ed8..39025427 100644
--- a/src/acom_music_box/music_box.py
+++ b/src/acom_music_box/music_box.py
@@ -4,12 +4,12 @@
 import logging
 logger = logging.getLogger(__name__)
 
-from .music_box_evolving_conditions import EvolvingConditions
-from .music_box_reaction_list import ReactionList
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_species_list import SpeciesList
-from .music_box_model_options import BoxModelOptions
-from .music_box_conditions import Conditions
+from evolving_conditions import EvolvingConditions
+from reaction_list import ReactionList
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from species_list import SpeciesList
+from model_options import BoxModelOptions
+from conditions import Conditions
 
 import csv
 import musica
diff --git a/src/acom_music_box/music_box_product.py b/src/acom_music_box/product.py
similarity index 100%
rename from src/acom_music_box/music_box_product.py
rename to src/acom_music_box/product.py
diff --git a/src/acom_music_box/music_box_reactant.py b/src/acom_music_box/reactant.py
similarity index 100%
rename from src/acom_music_box/music_box_reactant.py
rename to src/acom_music_box/reactant.py
diff --git a/src/acom_music_box/music_box_reaction.py b/src/acom_music_box/reaction.py
similarity index 100%
rename from src/acom_music_box/music_box_reaction.py
rename to src/acom_music_box/reaction.py
diff --git a/src/acom_music_box/music_box_reaction_list.py b/src/acom_music_box/reaction_list.py
similarity index 98%
rename from src/acom_music_box/music_box_reaction_list.py
rename to src/acom_music_box/reaction_list.py
index 512ed5ba..eee595bb 100644
--- a/src/acom_music_box/music_box_reaction_list.py
+++ b/src/acom_music_box/reaction_list.py
@@ -1,9 +1,9 @@
 import os
 import json
 from typing import List
-from .music_box_reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
-from .music_box_reactant import Reactant
-from .music_box_product import Product
+from reaction import Reaction, Branched, Arrhenius, Tunneling, Troe_Ternary
+from reactant import Reactant
+from product import Product
 
 class ReactionList:
     """
diff --git a/src/acom_music_box/music_box_reaction_rate.py b/src/acom_music_box/reaction_rate.py
similarity index 100%
rename from src/acom_music_box/music_box_reaction_rate.py
rename to src/acom_music_box/reaction_rate.py
diff --git a/src/acom_music_box/music_box_species.py b/src/acom_music_box/species.py
similarity index 100%
rename from src/acom_music_box/music_box_species.py
rename to src/acom_music_box/species.py
diff --git a/src/acom_music_box/music_box_species_concentration.py b/src/acom_music_box/species_concentration.py
similarity index 100%
rename from src/acom_music_box/music_box_species_concentration.py
rename to src/acom_music_box/species_concentration.py
diff --git a/src/acom_music_box/music_box_species_list.py b/src/acom_music_box/species_list.py
similarity index 99%
rename from src/acom_music_box/music_box_species_list.py
rename to src/acom_music_box/species_list.py
index 02d40f8b..3de570d8 100644
--- a/src/acom_music_box/music_box_species_list.py
+++ b/src/acom_music_box/species_list.py
@@ -1,7 +1,7 @@
 import json
 import os
 from typing import List
-from .music_box_species import Species
+from species import Species
 
 class SpeciesList:
     """