Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Cannot replicate prior results #552

Open
karafecho opened this issue Apr 13, 2021 · 6 comments
Open

Cannot replicate prior results #552

karafecho opened this issue Apr 13, 2021 · 6 comments

Comments

@karafecho
Copy link

This issue is to report replication problems. Specifically, in Winter 2020 (March?) I ran a query on carbon monoxide - gene - multiple sclerosis. I reported the results in the JMIR Medical Informatics MS. One of the reviewers was unable to replicate the results. I reran the query and also cannot replicate the results. My prior results are incomplete, with all genes missing.

image

image

@karafecho
Copy link
Author

Here is a link to the manuscript.

@karafecho
Copy link
Author

Here is a link to the answers.

@karafecho
Copy link
Author

Note that the answer set includes a new gene CASP8, which wasn't included in the original answer set. (Not a problem, just pointing that out.)

@cbizon
Copy link
Contributor

cbizon commented Apr 19, 2021

So I think that the genes are the same (except new CASP8) and the problem here is not getting omnicorp results, which are related to #532

@karafecho
Copy link
Author

So, the UI - OmniCorp issue appears to be major. @kennethmorton @patrickkwang : Is this something that can be readily addressed? Or, am I correct that this is a major issue?

@karafecho
Copy link
Author

Actually, in reading Chris' slack message, this doesn't appear to be a major issue, but are we on track for fixing it?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants