Increment version, update cran comments.

Also, fix codemeta metadata file.

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: codyn
 Title: Community Dynamics Metrics
-Version: 2.0.3.9001
+Version: 2.0.4
 Authors@R: c(person("Lauren", "Hallett", email="[email protected]", role=c("aut")),
     person("Meghan L.", "Avolio", email="[email protected]", role=c("aut")),
     person("Ian T.", "Carroll", email="[email protected]", role=c("aut")),

codemeta.json

@@ -1,5 +1,7 @@
 {
-  "@context": ["https://doi.org/10.5063/schema/codemeta-2.0", "http://schema.org"],
+  "@context": [
+    "https://doi.org/10.5063/schema/codemeta-2.0"
+  ],
   "@type": "SoftwareSourceCode",
   "identifier": "codyn",
   "description": "Univariate and multivariate temporal and spatial diversity indices, \n    rank abundance curves, and community stability measures. The functions \n    implement measures that are either explicitly temporal and include the \n    option to calculate them over multiple replicates, or spatial and include \n    the option to calculate them over multiple time points. Functions fall into \n    five categories: static diversity indices, temporal diversity indices, \n    spatial diversity indices, rank abundance curves, and community stability \n    measures. The diversity indices are temporal and spatial analogs to \n    traditional diversity indices. Specifically, the package includes functions \n    to calculate community richness, evenness and diversity at a given point in \n    space and time. In addition, it contains functions to calculate species \n    turnover, mean rank shifts, and lags in community similarity between two \n    time points.",
@@ -11,10 +13,10 @@
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
-    "version": "3.6.2",
+    "version": "4.0.0",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 3.6.2 (2019-12-12)",
+  "runtimePlatform": "R version 4.0.0 (2020-04-24)",
   "author": [
     {
       "@type": "Person",
@@ -240,7 +242,7 @@
   ],
   "releaseNotes": "https://github.com/NCEAS/codyn/blob/master/NEWS",
   "readme": "https://github.com/NCEAS/codyn/blob/master/README.md",
-  "fileSize": "113.24KB",
+  "fileSize": "113.242KB",
   "contIntegration": "https://travis-ci.org/NCEAS/codyn",
   "developmentStatus": "https://www.repostatus.org/#active",
   "citation": [

cran-comments.md

@@ -4,19 +4,21 @@ R CMD check and all tests passed on Linux, MacOS, and Windows, using the followi
 
 * Mac OS X 10.14.6
   * R 3.6.2 (x86_64-apple-darwin15.6.0 (64-bit))
+  * R 4.0.0 (x86_64-apple-darwin17.0 (64-bit))
 * Via R-hub
-  * Ubuntu Linux 16.04 LTS, R-release, GCC
-  * Windows Server 2008 R2 SP1, R-release, 32/64 bit
-  * macOS 10.11 El Capitan, R-release (experimental)
-  * Debian Linux, R-devel, GCC (2019-09-14 r77190) (x86_64-pc-linux-gnu (64-bit))
+  * R 4.0.0 debian-gcc-release (r-release)
+  * R Under development (unstable) (2020-05-01 r78341) (x86_64-pc-linux-gnu (64-bit))
 * Via win_builder
-  * R 3.6.1 (2019-07-05) (x86_64-w64-mingw32 (64-bit))
-  * R Under development (unstable) (2019-09-15 r77192) (x86_64-w64-mingw32 (64-bit))
-  
+  * R 4.0.0 (2020-04-24) (x86_64-w64-mingw32 (64-bit))
+  * R Under development (unstable) (2020-05-05 r78369) (x86_64-w64-mingw32 (64-bit))
+
 # R CMD check results
 
-* There were no NOTES, ERRORs or WARNINGs
+* There was one NOTE, that this is a new submission, and that words were potentially
+misspelled in the DESCRIPTION.  This is not a new submission, as it is an 
+update to fix tests that broke after the R 4.0.0 factor changes.  The flagged spelling word
+is correctly spelled: 'indices'.
 
 # Downstream dependencies
 
-None, since `revdepcheck::revdep_check()` reports no downnstream dependencies.
+None, since `devtools::revdep()` reports no downnstream dependencies.

docker/Dockerfile-devel

@@ -1,5 +1,5 @@
 ## Start with the rstudio daily image, which is built on a daily R build snapshot
-FROM rocker/verse:devel
+FROM rocker/r-devel
 MAINTAINER Matt Jones [email protected]
 
 RUN apt-get update && apt-get install -y xvfb xauth xfonts-base

docker/Dockerfile-stable

@@ -1,5 +1,5 @@
 ## Start with the ropensci image, and put our check code inline
-FROM rocker/verse
+FROM rocker/verse:3.6.3
 MAINTAINER Matt Jones [email protected]
 
 RUN apt-get update && apt-get install -y xvfb xauth xfonts-base