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codyn 2.0.0

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@mbjones mbjones released this 12 Jun 08:42
· 68 commits to master since this release

codyn: Community Dynamics Metrics

Version 2.0.0

NEW FUNCTIONS

  • community_structure: Calculates richness and evenness (using specified metric) for a replicate
  • community_diversity: Calculates diversity (using specified metric) for a replicate
  • RAC_change: Calculates changes in species richness, evenness, species' ranks, gain, and losses for a replicate over time
  • abundance_change: For each species in a replicate, calculates changes in abundance over time
  • curve_change: Calculates changes in the shape of the RAC curve for each replicate over time
  • multivariate_change: Calculates changes in community composition and dispersion over time
  • RAC_difference: Calculates differences in species richness, evenness, species' ranks, shared species between paired samples at a single point in time
  • abundance_difference: Calculates differences in abundance for each species in paired samples at a single point in time
  • curve_difference: Calculates differences in the shape of the RAC between paired samples at a single point in time
  • multivariate_difference: Calculates differences in community composition and dispersion of all replicates between treatments at a single point in time

BUG FIXES

Previous warnings have been changed to errors.