diff --git a/courses/2024_??_EMBL_image_data_formats.md b/courses/2024_??_EMBL_image_data_formats.md index 5ea94d4e..ad210a13 100644 --- a/courses/2024_??_EMBL_image_data_formats.md +++ b/courses/2024_??_EMBL_image_data_formats.md @@ -54,15 +54,25 @@ Dear Trainers, please consider checking these [teaching tips](https://github.com ### Modules + +#### Day 1: Fiji / NGFF Converter / Bftools + +Trainers: Christian Tischer, Bugra Oezdemir, Alexandra Zakieva(?) + 1. [Image data formats](https://neubias.github.io/training-resources/image_file_formats/index.html) - - Trainer Fiji: Christian Tischer, Alexandra Zakieva ? - - Trainer python: Bugra Oezdemir, Felix Schneider ? -1. [TIFF](https://neubias.github.io/training-resources/tiff/index.html) - - Trainer Fiji: Bugra Oezdemir, Alexandra Zakieva ? - - Trainer python: Bugra Oezdemir / Felix Schneider ? 1. [Big image data formats](https://neubias.github.io/training-resources/big_image_file_formats/index.html) - - Trainer Fiji: Christian Tischer, Alexandra Zakieva ? - - Trainer python: Felix Schneider ? + - TODO: Implementation Lazy load from TIFF stack in python + - TODO: Show opening one HDF5 flavour (BDV, Imaris) + - https://imaris.oxinst.com/support/imaris-file-format + - Python implementation? => Napari IMS support? +1. [OME-TIFF](https://neubias.github.io/training-resources/tiff/index.html) + - TODO: https://github.com/NEUBIAS/training-resources/issues/729 + - TODO: ... 1. [OME-Zarr](https://neubias.github.io/training-resources/ome_zarr/index.html) - - Trainer Fiji: Christian Tischer, Alexandra Zakieva ? - - Trainer python: Bugra Oezdemir ? + - TODO: we know, many (see issues) + +#### Day 2: Python + +Same modules as first day but with python implementations. + +Trainers: Bugra Oezdemir, Felix Schneider