diff --git a/resources/nfdi4bioimage.yml b/resources/nfdi4bioimage.yml index 61fd4ffd..e521d3b8 100644 --- a/resources/nfdi4bioimage.yml +++ b/resources/nfdi4bioimage.yml @@ -8678,4 +8678,69 @@ resources: url: - https://zenodo.org/records/8139354 - https://doi.org/10.5281/zenodo.8139354 - \ No newline at end of file + - authors: + - Kunis, Susanne + - Dohle, Julia + description: "Provides an overview of contexts, frameworks, and models from the\ + \ world of bioimage data as well as metadata. Visualizes the techniques for structuring\ + \ this data as Linked Data. (Walkthrough Video: https://doi.org/10.5281/zenodo.7018928\ + \ )\n\nContent:\n\n\n\tTypes of metadata\n\tData formats\n\tData Models Microscopy\ + \ Data\n\tTools to edit/gather metadata\n\tISA Framework\n\tFDO Framework\n\t\ + Ontology\n\tRDF\n\tJSON-LD\n\tSPARQL\n\tKnowledge Graph\n\tLinked Data\n\tSmart\ + \ Data\n\t...\n" + license: cc-by-4.0 + name: 'Structuring of Data and Metadata in Bioimaging: Concepts and technical Solutions + in the Context of Linked Data' + num_downloads: 704 + publication_date: '2022-07-12' + submission_date: '2024-11-19T15:37:57.161475' + url: + - https://zenodo.org/records/7018750 + - https://doi.org/10.5281/zenodo.7018750 +- authors: + - Kunis + description: 'This thesis deals with concepts and solutions in the field of data + management in everyday scientific life for image data from microscopy. The focus + of the formulated requirements has so far been on published data, which represent + only a small subset of the data generated in the scientific process. More and + more, everyday research data are moving into the focus of the principles for the + management of research data that were formulated early on (FAIR-principles). The + adequate management of this mostly multimodal data is a real challenge in terms + of its heterogeneity and scope. There is a lack of standardised and established + workflows and also the software solutions available so far do not adequately reflect + the special requirements of this area. However, the success of any data management + process depends heavily on the degree of integration into the daily work routine. + Data management must, as far as possible, fit seamlessly into this process. Microscopy + data in the scientific process is embedded in pre-processing, which consists of + preparatory laboratory work and the analytical evaluation of the microscopy data. + In terms of volume, the image data often form the largest part of data generated + within this entire research process. In this paper, we focus on concepts and techniques + related to the handling and description of this image data and address the necessary + basics. The aim is to improve the embedding of the existing data management solution + for image data (OMERO) into the everyday scientific work. For this purpose, two + independent software extensions for OMERO were implemented within the framework + of this thesis: OpenLink and MDEmic. OpenLink simplifies the access to the data + stored in the integrated repository in order to feed them into established workflows + for further evaluations and enables not only the internal but also the external + exchange of data without weakening the advantages of the data repository. The + focus of the second implemented software solution, MDEmic, is on the capturing + of relevant metadata for microscopy. Through the extended metadata collection, + a corresponding linking of the multimodal data by means of a unique description + and the corresponding semantic background is aimed at. The configurability of + MDEmic is designed to address the currently very dynamic development of underlying + concepts and formats. The main goal of MDEmic is to minimise the workload and + to automate processes. This provides the scientist with a tool to handle this + complex and extensive task of metadata acquisition for microscopic data in a simple + way. With the help of the software, semantic and syntactic standardisation can + take place without the scientist having to deal with the technical concepts. The + generated metadata descriptions are automatically integrated into the image repository + and, at the same time, can be transferred by the scientists into formats that + are needed when publishing the data.' + name: Engineering a Software Environment for Research Data Management of Microscopy + Image Data in a Core Facility + num_downloads: 60 + publication_date: '2022-05-30' + submission_date: '2024-11-19T15:37:57.429914' + url: + - https://zenodo.org/records/6905931 + - https://doi.org/10.5281/zenodo.6905931