From c589ab81882e2f5ad3f82b612c2b51b843f75b49 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Tue, 17 Dec 2024 11:38:56 +0000
Subject: [PATCH 1/2] A try-except block was added to handle JSON decoding
 errors so that the for-loop can continue if an error occurs.

---
 scripts/auto-add-from-zenodo-communities.py | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/scripts/auto-add-from-zenodo-communities.py b/scripts/auto-add-from-zenodo-communities.py
index 19f17554..bc105678 100644
--- a/scripts/auto-add-from-zenodo-communities.py
+++ b/scripts/auto-add-from-zenodo-communities.py
@@ -50,10 +50,13 @@ def main():
         response = requests.get('https://zenodo.org/api/records',
                                 params={'communities': community,
                                         'access_token': token})
-        online_data = response.json()
-        hits = online_data["hits"]["hits"]
-        urls = [u["links"]["self_html"] for u in hits]
-
+        try:
+            online_data = response.json()
+            hits = online_data["hits"]["hits"]
+            urls = [u["links"]["self_html"] for u in hits]
+        except requests.exceptions.JSONDecodeError:
+            print(f"Error decoding JSON for community: {community}")
+            continue
 
         # compare which new is not in old
 
@@ -100,6 +103,5 @@ def main():
     
 
 
-
 if __name__ == "__main__":
     main()

From d3b590b87ec3459bd27d1c6457212c04aead89dd Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Tue, 17 Dec 2024 11:39:59 +0000
Subject: [PATCH 2/2] urls = [zen

---
 scripts/generate_link_lists.py | 38 +++++-----------------------------
 1 file changed, 5 insertions(+), 33 deletions(-)

diff --git a/scripts/generate_link_lists.py b/scripts/generate_link_lists.py
index 16db10d9..82cc7761 100644
--- a/scripts/generate_link_lists.py
+++ b/scripts/generate_link_lists.py
@@ -321,7 +321,11 @@ def read_zenodo(record):
     
     # Download the file
     response = requests.get(url)
-    data = response.json()
+    try:
+        data = response.json()
+    except json.JSONDecodeError:
+        data = {}
+
     return data
 
 
@@ -495,35 +499,3 @@ def complete_zenodo_data(zenodo_url):
     """
     zenodo_data = read_zenodo(zenodo_url)
     entry = {}
-    urls = [zenodo_url]
-
-    if 'doi_url' in zenodo_data.keys():
-        doi_url = zenodo_data['doi_url']
-
-        # Add DOI URL to the URLs list if it's not already there
-        if doi_url not in urls:
-            urls.append(doi_url)
-    entry['url'] = urls
-
-    if 'metadata' in zenodo_data.keys():
-        metadata = zenodo_data['metadata']
-        # Update entry with Zenodo metadata and statistics
-        entry['name'] = metadata['title']
-        if 'publication_date' in metadata.keys():
-            entry['publication_date'] = metadata['publication_date']
-        if 'description' in metadata.keys():
-            entry['description'] = remove_html_tags(metadata['description'])
-        if 'creators' in metadata.keys():
-            creators = metadata['creators']
-            entry['authors'] = [c['name'] for c in creators]
-        if 'license' in metadata.keys():
-            entry['license'] = metadata['license']['id']
-
-    if 'stats' in zenodo_data.keys():
-        entry['num_downloads'] = zenodo_data['stats']['downloads']
-
-    return entry
-
-
-if __name__ == "__main__":
-    main()