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refine definition and add subclass of axiom relating this to its PATO…
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… quality
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@StroemPhi @Zack-83
StroemPhi authored and Zack-83 committed May 3, 2024
1 parent f2d32bd commit 97d64a6
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5 changes: 4 additions & 1 deletion src/ontology/components/vibso_classes.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@ Declaration(Class(obo:IAO_0000140))
Declaration(Class(obo:OBI_0000654))
Declaration(Class(obo:OBI_0000968))
Declaration(Class(obo:PATO_0001018))
Declaration(Class(obo:PATO_0001293))
Declaration(Class(obo:VIBSO_0000000))
Declaration(Class(obo:VIBSO_0000001))
Declaration(Class(obo:VIBSO_0000002))
Expand Down Expand Up @@ -65,6 +66,7 @@ Declaration(Class(obo:VIBSO_0000026))
Declaration(Class(obo:VIBSO_0000027))
Declaration(Class(obo:VIBSO_0000028))
Declaration(ObjectProperty(obo:BFO_0000050))
Declaration(ObjectProperty(obo:IAO_0000136))
Declaration(AnnotationProperty(obo:IAO_0000112))
Declaration(AnnotationProperty(obo:IAO_0000115))
Declaration(AnnotationProperty(obo:IAO_0000116))
Expand Down Expand Up @@ -404,12 +406,13 @@ SubClassOf(obo:VIBSO_0000027 obo:IAO_0000140)

# Class: obo:VIBSO_0000028 (absorbance)

AnnotationAssertion(Annotation(dc:source <http://purl.allotrope.org/ontologies/result#AFR_0001157>) Annotation(dc:source <https://doi.org/10.1351/goldbook>) obo:IAO_0000115 obo:VIBSO_0000028 "A data item that quantifies the absorption quality of a sample by being the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption)."@en)
AnnotationAssertion(Annotation(dc:source <http://purl.allotrope.org/ontologies/result#AFR_0001157>) Annotation(dc:source <https://doi.org/10.1351/goldbook>) Annotation(dc:source Wikipedia:Absorbance) obo:IAO_0000115 obo:VIBSO_0000028 "A data item that quantifies the absorption of light by some material as the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption)."@en)
AnnotationAssertion(dc:contributor obo:VIBSO_0000028 <http://orcid.org/0000-0002-1595-3213>)
AnnotationAssertion(rdfs:comment obo:VIBSO_0000028 "Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping."@en)
AnnotationAssertion(rdfs:label obo:VIBSO_0000028 "absorbance"@en)
AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0000028 <https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86>)
SubClassOf(obo:VIBSO_0000028 obo:IAO_0000027)
SubClassOf(obo:VIBSO_0000028 ObjectSomeValuesFrom(obo:IAO_0000136 obo:PATO_0001293))


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4 changes: 4 additions & 0 deletions src/templates/vibso_classes.tsv
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Expand Up @@ -36,5 +36,9 @@ Together with the focal point distance, this setting defines the region of inter
obo:VIBSO_0000028 absorbance extinction https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86 A meassurement datum that represents the logarithm to the base 10 (linear absorbance) of the incident (prior to absorption) spectral radiant power, divided by the transmitted spectral radiant power. https://doi.org/10.1351/goldbook|http://purl.allotrope.org/ontologies/result#AFR_0001157 owl:Class measurement datum ORCID:0000-0002-1595-3213 Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping.
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Together with the focal point distance, this setting defines the region of interest depth." owl:Class setting datum ORCID:0000-0001-7694-5519|ORCID:0000-0002-2239-3956 10 number of measurements Z = (region of interest depth) / (point distance Z)
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obo:VIBSO_0000028 absorbance https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86 A data item that quantifies the absorption quality of a sample by being the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption). https://doi.org/10.1351/goldbook|http://purl.allotrope.org/ontologies/result#AFR_0001157 owl:Class data item| ORCID:0000-0002-1595-3213 Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping.
>>>>>>> 7d24ea3 (update definition)
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obo:VIBSO_0000028 absorbance https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86 A data item that quantifies the absorption of light by some material as the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption). https://doi.org/10.1351/goldbook|http://purl.allotrope.org/ontologies/result#AFR_0001157|https://en.wikipedia.org/wiki/Absorbance owl:Class data item|('is about' some obo:PATO_0001293) ORCID:0000-0002-1595-3213 Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping.
>>>>>>> 5b14450 (refine definition and add subclass of axiom relating this to its PATO quality)

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