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Add absorbance (DO NOT MERGE YET) #87

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Add absorbance (DO NOT MERGE YET) #87

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3614f79
add absorbance to class template
StroemPhi Jun 21, 2023
b45c4d7
fix typo
StroemPhi Jun 21, 2023
646d829
add mapping annotation to TSV template and AFO
StroemPhi Jun 21, 2023
59466ae
Revert "add mapping annotation to TSV template and AFO"
StroemPhi Jun 22, 2023
e9422cc
fix typo
StroemPhi Jun 22, 2023
33ec9de
recreate vibso owl components
StroemPhi Jun 22, 2023
ac8f85f
change label to just absorbance, as the definition makes clear this i…
StroemPhi Jun 22, 2023
f2d32bd
update definition
StroemPhi Jun 23, 2023
97d64a6
refine definition and add subclass of axiom relating this to its PATO…
StroemPhi Jun 23, 2023
c2695aa
Merge branch 'main' into 86-add-absorbance
Zack-83 Aug 9, 2024
5b7fb10
beautify table
Zack-83 Aug 9, 2024
2b58f63
Merge branch 'main' into 86-add-absorbance
Zack-83 Aug 9, 2024
2f05199
change IRI
Zack-83 Aug 12, 2024
d7945b4
sort columns
Zack-83 Nov 11, 2024
d2532c3
Merge branch 'main' into 86-add-absorbance
Zack-83 Nov 11, 2024
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21 changes: 17 additions & 4 deletions src/ontology/components/vibso_classes.owl
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -24,8 +24,8 @@ Prefix(Wikipedia:=<https://en.wikipedia.org/wiki/>)


Ontology(<http://purl.obolibrary.org/obo/vibso/components/vibso_classes.owl>
<http://purl.obolibrary.org/obo/vibso/releases/2024-09-23/components/vibso_classes.owl>
Annotation(rdfs:comment "This component is derived from the manually edited 'src/templates/vibso_classes.tsv' template.")
<http://purl.obolibrary.org/obo/vibso/releases/2023-06-23/components/vibso_classes.owl>
Annotation(rdfs:comment "This component is derived from the 'src/templates/vibso_classes.tsv', which is edited manually by domain experts.")

Declaration(Class(obo:BFO_0000029))
Declaration(Class(obo:IAO_0000027))
Expand All @@ -38,6 +38,7 @@ Declaration(Class(obo:OBI_0001933))
Declaration(Class(obo:OBI_0200000))
Declaration(Class(obo:OBI_0200181))
Declaration(Class(obo:PATO_0001018))
Declaration(Class(obo:PATO_0001293))
Declaration(Class(obo:STATO_0000184))
Declaration(Class(obo:VIBSO_0000000))
Declaration(Class(obo:VIBSO_0000001))
Expand Down Expand Up @@ -70,6 +71,7 @@ Declaration(Class(obo:VIBSO_0000027))
Declaration(Class(obo:VIBSO_0000028))
Declaration(Class(obo:VIBSO_0000029))
Declaration(Class(obo:VIBSO_0000030))
Declaration(ObjectProperty(obo:BFO_0000050))
Declaration(Class(obo:VIBSO_0000031))
Declaration(Class(obo:VIBSO_0000032))
Declaration(Class(obo:VIBSO_0000033))
Expand All @@ -85,6 +87,7 @@ Declaration(Class(obo:VIBSO_0000042))
Declaration(Class(obo:VIBSO_0000043))
Declaration(Class(obo:VIBSO_0000044))
Declaration(Class(obo:VIBSO_0000045))
Declaration(Class(obo:VIBSO_0000051))
Declaration(Class(obo:VIBSO_0003017))
Declaration(ObjectProperty(obo:IAO_0000136))
Declaration(ObjectProperty(obo:OBI_0000293))
Expand Down Expand Up @@ -421,6 +424,9 @@ AnnotationAssertion(rdfs:label obo:VIBSO_0000027 "number of measurements Z"@en)
AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0000027 <https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/32>)
SubClassOf(obo:VIBSO_0000027 obo:IAO_0000140)


# Class: obo:VIBSO_0000028 (absorbance)

# Class: obo:VIBSO_0000028 (Raman raw data)

AnnotationAssertion(Annotation(dc:source <https://wiki.charisma.ideaconsult.net/wiki/Item:Q64>) obo:IAO_0000115 obo:VIBSO_0000028 "A measurement datum that is obtained from a calibrated and ready Raman spectrometer and prior to be submitted to any mathematical modification. The only corrections on the data shall be the one associated with the spectrometer. The data will assign pixels readouts with nm as per calibration of the spectrometer and a.u. as intensity readout but will not be corrected in relationship of the incident monochromatic beam."@en)
Expand Down Expand Up @@ -452,6 +458,14 @@ AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0000030 <https://github.com/NFDI4Chem
SubClassOf(obo:VIBSO_0000030 obo:IAO_0000027)
SubClassOf(obo:VIBSO_0000030 ObjectSomeValuesFrom(obo:OBI_0000312 ObjectIntersectionOf(obo:OBI_0200000 ObjectSomeValuesFrom(obo:OBI_0000293 obo:VIBSO_0000028))))

AnnotationAssertion(Annotation(dc:source <http://purl.allotrope.org/ontologies/result#AFR_0001157>) Annotation(dc:source <https://doi.org/10.1351/goldbook>) Annotation(dc:source Wikipedia:Absorbance) obo:IAO_0000115 obo:VIBSO_0000028 "A data item that quantifies the absorption of light by some material as the logarithm of the incident electromagnetic radiation power (before absorption), divided by the transmitted electromagnetic radiation power (after absorption)."@en)
AnnotationAssertion(dc:contributor obo:VIBSO_0000028 <http://orcid.org/0000-0002-1595-3213>)
AnnotationAssertion(rdfs:comment obo:VIBSO_0000028 "Definition was adapted from “afo:absorbance“. We did not reuse/import this AFO term directly due to the associated ontological commitment of AFO. Yet, we will provide a mapping."@en)
AnnotationAssertion(rdfs:label obo:VIBSO_0000028 "absorbance"@en)
AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0000028 <https://github.com/NFDI4Chem/VibrationalSpectroscopyOntology/issues/86>)
SubClassOf(obo:VIBSO_0000028 obo:IAO_0000027)
SubClassOf(obo:VIBSO_0000028 ObjectSomeValuesFrom(obo:IAO_0000136 obo:PATO_0001293))

# Class: obo:VIBSO_0000031 (resolution)

AnnotationAssertion(obo:IAO_0000115 obo:VIBSO_0000031 "A physical quality of a measurement device that expresses (realizes) the device's capacity to distinguish between two distinct but closely related measurements of the same physical quality or type, often quantified as the smallest detectable difference (resolution interval) between measured values."@en)
Expand Down Expand Up @@ -624,5 +638,4 @@ AnnotationAssertion(rdfs:seeAlso obo:VIBSO_0003017 <https://github.com/NFDI4Chem
SubClassOf(obo:VIBSO_0003017 obo:IAO_0000140)
SubClassOf(obo:VIBSO_0003017 ObjectSomeValuesFrom(obo:OBI_0000312 obo:OBI_0200181))


)
)
9 changes: 3 additions & 6 deletions src/ontology/components/vibso_object_properties.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -24,9 +24,6 @@ Prefix(Wikipedia:=<https://en.wikipedia.org/wiki/>)


Ontology(<http://purl.obolibrary.org/obo/vibso/components/vibso_object_properties.owl>
<http://purl.obolibrary.org/obo/vibso/releases/2024-09-23/components/vibso_object_properties.owl>
Annotation(rdfs:comment "This component is derived from the manually edited 'src/templates/vibso_object_properties.tsv' template.")



)
<http://purl.obolibrary.org/obo/vibso/releases/2023-06-22/components/vibso_object_properties.owl>
Annotation(rdfs:comment "This component is derived from the 'src/templates/vibso_object_properties.tsv', which is edited manually by domain experts.")
)
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