From 49ffef064c2d57860cbfcc24279461daf50ef6bd Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Wed, 12 Sep 2018 16:39:37 +0100 Subject: [PATCH 01/10] binning and chunking of IR list --- .../database_utils/multiple_case_adder.py | 80 +++++++++++++------ 1 file changed, 55 insertions(+), 25 deletions(-) diff --git a/gelweb/gel2mdt/database_utils/multiple_case_adder.py b/gelweb/gel2mdt/database_utils/multiple_case_adder.py index 5773c254..49dc22b9 100755 --- a/gelweb/gel2mdt/database_utils/multiple_case_adder.py +++ b/gelweb/gel2mdt/database_utils/multiple_case_adder.py @@ -55,7 +55,7 @@ def __init__(self, sample_type, head=None, test_data=False, skip_demographics=Fa :param sample: If you want to add a single sample, set this the GELID :param pullt3: Boolean to pull t3 variants """ - logger.info("Initialising a MultipleCaseAdder.") + print("Initialising a MultipleCaseAdder.") if sample_type == "cancer" or sample_type == "raredisease": pass @@ -82,11 +82,11 @@ def __init__(self, sample_type, head=None, test_data=False, skip_demographics=Fa self.sample_type = sample_type if self.test_data: - logger.info("Fetching test data.") + print("Fetching test data.") # set list_of_cases to test zoo self.list_of_cases = self.fetch_test_data() self.cases_to_poll = None - logger.info("Fetched test data.") + print("Fetched test data.") self.cases_to_add = self.check_cases_to_add() self.cases_to_update = self.check_cases_to_update() # self.cases_to_skip = set(self.list_of_cases) - \ @@ -101,31 +101,61 @@ def __init__(self, sample_type, head=None, test_data=False, skip_demographics=Fa self.cases_to_skip = [] else: # set list_of_cases to cases of interest from API - logger.info("Fetching live API data.") - logger.info("Polling for list of available cases...") + print("Fetching live API data.") + print("Polling for list of available cases...") interpretation_list_poll = InterpretationList(sample_type=sample_type) - logger.info("Fetched available cases") + cases_fetched = len(interpretation_list_poll.cases_to_poll) + print("Fetched", cases_fetched, "available cases") - logger.info("Determining which cases to poll...") - self.cases_to_poll = interpretation_list_poll.cases_to_poll - if head: - self.cases_to_poll = self.cases_to_poll[:head] - - logger.info("Fetching API JSON data for cases to poll...") - self.list_of_cases = self.fetch_api_data() + print("Determining which cases to poll...") + # reverse update, do the newest first! + self.total_cases_to_poll = interpretation_list_poll.cases_to_poll[::-1] if head: - # take a certain number of cases off the top - self.list_of_cases = self.list_of_cases[:head] - - logger.info("Fetched all required CIP API data.") - - logger.info("Checking which cases to add.") - self.cases_to_add = self.check_cases_to_add() - logger.info("Checking which cases require updating.") - self.cases_to_update = self.check_cases_to_update()# - self.cases_to_skip = set(self.list_of_cases) - \ - set(self.cases_to_add) - \ - set(self.cases_to_update) + self.total_cases_to_poll = self.total_cases_to_poll[:head] + self.num_cases_to_poll = len(self.total_cases_to_poll) + + # work out how many hundreds in fetched cases + num_full_bins = self.num_cases_to_poll // 100 + num_bins = num_full_bins + 1 + final_bin_size = self.num_cases_to_poll - (num_full_bins * 100) + print(num_bins, final_bin_size) + + bins = [] + for i in range(num_full_bins): + bins.append( + [ + (100*i) + 1, + (100*i) + 100 + ] + ) # [0, 100], [101, 200] etc + bins.append([num_full_bins + 1, None]) + + bin_count = 1 + for b in bins: + print("Fetching cases for bin", bin_count, "of", len(bins)) + self.cases_to_poll = self.total_cases_to_poll[b[0]: b[1]] + + print("Fetching API JSON data for cases to poll...") + self.list_of_cases = self.fetch_api_data() + if head: + # take a certain number of cases off the top + self.list_of_cases = self.list_of_cases[:head] + print("Fetched all required CIP API data.") + print("Checking which cases to add.") + self.cases_to_add = self.check_cases_to_add() + print("Checking which cases require updating.") + self.cases_to_update = self.check_cases_to_update()# + self.cases_to_skip = set(self.list_of_cases) - \ + set(self.cases_to_add) - \ + set(self.cases_to_update) + print("Finished processing bin", bin_count, "of", len(bins)) + + for case in self.cases_to_add: + del case + for case in self.cases_to_update: + del case + + bin_count += 1 def update_database(self): # begin update process From b97b855101ec696d3952b91c00973a458795409a Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Thu, 13 Sep 2018 09:00:06 +0100 Subject: [PATCH 02/10] bugfixes for memory saving code --- gelweb/gel2mdt/database_utils/multiple_case_adder.py | 9 +++++---- gelweb/gel2mdt/management/commands/run_batch_update.py | 1 - 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/gelweb/gel2mdt/database_utils/multiple_case_adder.py b/gelweb/gel2mdt/database_utils/multiple_case_adder.py index 49dc22b9..ae2b64fe 100755 --- a/gelweb/gel2mdt/database_utils/multiple_case_adder.py +++ b/gelweb/gel2mdt/database_utils/multiple_case_adder.py @@ -118,21 +118,20 @@ def __init__(self, sample_type, head=None, test_data=False, skip_demographics=Fa num_full_bins = self.num_cases_to_poll // 100 num_bins = num_full_bins + 1 final_bin_size = self.num_cases_to_poll - (num_full_bins * 100) - print(num_bins, final_bin_size) bins = [] for i in range(num_full_bins): bins.append( [ - (100*i) + 1, + (100*i), (100*i) + 100 ] ) # [0, 100], [101, 200] etc - bins.append([num_full_bins + 1, None]) + bins.append([num_full_bins * 100, None]) bin_count = 1 for b in bins: - print("Fetching cases for bin", bin_count, "of", len(bins)) + print("Fetching cases", b[0], "to", b[1], "(bin", bin_count, "of", str(len(bins)) + ")") self.cases_to_poll = self.total_cases_to_poll[b[0]: b[1]] print("Fetching API JSON data for cases to poll...") @@ -148,6 +147,8 @@ def __init__(self, sample_type, head=None, test_data=False, skip_demographics=Fa self.cases_to_skip = set(self.list_of_cases) - \ set(self.cases_to_add) - \ set(self.cases_to_update) + self.update_database() + print("Finished processing bin", bin_count, "of", len(bins)) for case in self.cases_to_add: diff --git a/gelweb/gel2mdt/management/commands/run_batch_update.py b/gelweb/gel2mdt/management/commands/run_batch_update.py index 3ec4ce12..fe39d846 100644 --- a/gelweb/gel2mdt/management/commands/run_batch_update.py +++ b/gelweb/gel2mdt/management/commands/run_batch_update.py @@ -54,4 +54,3 @@ def handle(self, *args, **options): test_data=options['test_data'], skip_demographics=options['skip_demographics'], pullt3=options['pullt3']) - mca.update_database() From 4f569783a289af2c0754a6412860c0e816a258e1 Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Thu, 13 Sep 2018 11:47:13 +0100 Subject: [PATCH 03/10] nicer output from gel2mdt --- gelweb/gel2mdt/database_utils/case_handler.py | 1 - .../database_utils/multiple_case_adder.py | 29 +++++++++++-------- 2 files changed, 17 insertions(+), 13 deletions(-) diff --git a/gelweb/gel2mdt/database_utils/case_handler.py b/gelweb/gel2mdt/database_utils/case_handler.py index e0ecbb50..b48860e0 100755 --- a/gelweb/gel2mdt/database_utils/case_handler.py +++ b/gelweb/gel2mdt/database_utils/case_handler.py @@ -736,7 +736,6 @@ def get_panels(self): if not polled: panel_file = os.path.join(panelapp_storage, '{}_{}.json'.format(panel['panelName'], panel['panelVersion'])) - print(panel["panelName"], panel["panelVersion"]) if os.path.isfile(panel_file): try: diff --git a/gelweb/gel2mdt/database_utils/multiple_case_adder.py b/gelweb/gel2mdt/database_utils/multiple_case_adder.py index ae2b64fe..12304a0e 100755 --- a/gelweb/gel2mdt/database_utils/multiple_case_adder.py +++ b/gelweb/gel2mdt/database_utils/multiple_case_adder.py @@ -33,6 +33,7 @@ import logging import time from .demographics_handler import DemographicsHandler +from tqdm import tqdm # set up logging logger = logging.getLogger(__name__) @@ -164,9 +165,9 @@ def update_database(self): error = None try: logger.info("Adding cases from cases_to_add.") - print("Adding cases") + print("Adding", len(self.cases_to_add), "cases") self.add_cases() - print("Updating cases") + print("Updating", len(self.cases_to_update), "cases") self.add_cases(update=True) success = True except Exception as e: @@ -213,9 +214,12 @@ def fetch_test_data(self): return list_of_cases def fetch_api_data(self): - list_of_cases = [ - # list comprehension, calling self.get_case_json each time for poll - Case( + list_of_cases = [] + # list comprehension, calling self.get_case_json each time for poll + for case in tqdm(self.cases_to_poll): + tqdm.write("Polling for: {case}".format(case=case["interpretation_request_id"])) + + c = Case( # instatiate a new case with the polled json case_json=self.get_case_json(case["interpretation_request_id"]), panel_manager=self.panel_manager, @@ -223,8 +227,9 @@ def fetch_api_data(self): gene_manager=self.gene_manager, skip_demographics=self.skip_demographics, pullt3=self.pullt3 - ) for case in self.cases_to_poll - ] + ) + list_of_cases.append(c) + print("Successfully fetched", len(list_of_cases), "cases from CIP API.") return list_of_cases @@ -235,8 +240,6 @@ def get_case_json(self, interpretation_request_id): :param interpretation_request_id: an IR ID of the format XXXX-X :returns: A case json associated with the given IR ID from CIP-API """ - logger.info("Polling API for case", interpretation_request_id) - print("Polling API for case", interpretation_request_id) request_poll = PollAPI( # instantiate a poll of CIP API for a given case json "cip_api", "interpretation-request/{id}/{version}".format( @@ -392,8 +395,9 @@ def add_cases(self, update=False): model_objects = model_type.objects.all().values(*lookups) elif not lookups: model_objects = model_type.objects.all() - for case in cases: + for case in tqdm(cases, desc="Parsing {model_type} into DB".format(model_type=model_type.__name__)): # create a CaseAttributeManager for the case + tqdm.write(case.request_id) case.attribute_managers[model_type] = CaseAttributeManager( case, model_type, model_objects) # use thea attribute manager to set the case models @@ -408,11 +412,12 @@ def add_cases(self, update=False): ] elif many: model_list = [] - for case in cases: + for case in tqdm(cases, desc="Parsing {model_type} into DB".format(model_type=model_type.__name__)): attribute_manager = case.attribute_managers[model_type] many_case_model = attribute_manager.case_model - for case_model in many_case_model.case_models: + for case_model in tqdm(many_case_model.case_models, desc=case.request_id): model_list.append(case_model) + tqdm.write(str(case_model.entry)) # now create the required new Model instances from CaseModel lists if model_type == GELInterpretationReport: From b9f7ad021c634343399780029a4d2b86248d7ce3 Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Thu, 13 Sep 2018 12:53:24 +0100 Subject: [PATCH 04/10] bugfix for loading bar for genes --- gelweb/gel2mdt/database_utils/case_handler.py | 4 +++- gelweb/gel2mdt/templates/gel2mdt/cancer_main.html | 4 ++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/gelweb/gel2mdt/database_utils/case_handler.py b/gelweb/gel2mdt/database_utils/case_handler.py index b48860e0..81ee4c30 100755 --- a/gelweb/gel2mdt/database_utils/case_handler.py +++ b/gelweb/gel2mdt/database_utils/case_handler.py @@ -33,6 +33,7 @@ import re import copy import pprint +from tqdm import tqdm class Case(object): @@ -829,9 +830,10 @@ def get_genes(self): }) self.case.gene_manager.add_searched(transcript.gene_ensembl_id, str(transcript.gene_hgnc_id)) - for gene in gene_list: + for gene in tqdm(gene_list, desc=self.case.request_id): gene['HGNC_ID'] = None if gene['EnsembleGeneIds']: + tqdm.write(gene["EnsembleGeneIds"]) polled = self.case.gene_manager.fetch_searched(gene['EnsembleGeneIds']) if polled == 'Not_found': gene['HGNC_ID'] = None diff --git a/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html b/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html index cd31872a..26bb33e2 100755 --- a/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html +++ b/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html @@ -181,7 +181,7 @@

- + Trio status:
@@ -201,7 +201,7 @@

- + De novo status:
From b0446331f114e8a9e06885addef2e6e09c4fced1 Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Thu, 13 Sep 2018 12:53:50 +0100 Subject: [PATCH 05/10] fixed security flaw in allowing MDT access to clin --- gelweb/gel2clin/templates/gel2clin/cancer_proband.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gelweb/gel2clin/templates/gel2clin/cancer_proband.html b/gelweb/gel2clin/templates/gel2clin/cancer_proband.html index a296777a..29e3fa8e 100755 --- a/gelweb/gel2clin/templates/gel2clin/cancer_proband.html +++ b/gelweb/gel2clin/templates/gel2clin/cancer_proband.html @@ -1,4 +1,4 @@ -{% extends 'gel2mdt/base.html' %} +{% extends 'gel2clin/base.html' %} {% load bootstrap3 %} {% load static %} {% block content %} From 5ae000405c8a020f8da73e1aa51a2f3500a98291 Mon Sep 17 00:00:00 2001 From: Patrick Lombard Date: Thu, 13 Sep 2018 13:59:00 +0100 Subject: [PATCH 06/10] added in gene search --- gelweb/gel2mdt/forms.py | 4 +++ .../templates/gel2mdt/cancer_main.html | 13 ++++++++ .../templates/gel2mdt/rare_disease_main.html | 13 ++++++++ gelweb/gel2mdt/urls.py | 1 + gelweb/gel2mdt/views.py | 30 +++++++++++++++++-- 5 files changed, 59 insertions(+), 2 deletions(-) diff --git a/gelweb/gel2mdt/forms.py b/gelweb/gel2mdt/forms.py index c719d43c..bf43c67f 100755 --- a/gelweb/gel2mdt/forms.py +++ b/gelweb/gel2mdt/forms.py @@ -376,3 +376,7 @@ class GenomicsEnglandform(forms.Form): # Version number of the interpretation ir_version = forms.IntegerField(label='Version') report_version = forms.IntegerField(label='Clinical Report Version') + + +class GeneSearchForm(forms.Form): + gene = forms.CharField(max_length=25, widget = forms.TextInput(attrs={'style': 'width:200px'})) diff --git a/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html b/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html index cd31872a..661cd52d 100755 --- a/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html +++ b/gelweb/gel2mdt/templates/gel2mdt/cancer_main.html @@ -220,6 +220,19 @@

+
+ {% csrf_token %} + + + + + + + +
Gene Search:{{ gene_search_form.gene }} + +
+

diff --git a/gelweb/gel2mdt/templates/gel2mdt/rare_disease_main.html b/gelweb/gel2mdt/templates/gel2mdt/rare_disease_main.html index 8f3e72c3..85dab11b 100755 --- a/gelweb/gel2mdt/templates/gel2mdt/rare_disease_main.html +++ b/gelweb/gel2mdt/templates/gel2mdt/rare_disease_main.html @@ -220,6 +220,19 @@

+
+ {% csrf_token %} + + + + + + + +
Gene Search:{{ gene_search_form.gene }} + +
+
diff --git a/gelweb/gel2mdt/urls.py b/gelweb/gel2mdt/urls.py index d56eb10e..5bdefbd4 100755 --- a/gelweb/gel2mdt/urls.py +++ b/gelweb/gel2mdt/urls.py @@ -78,6 +78,7 @@ path(r'genomics_england_report/', views.genomics_england_report, name='genomics-england-report'), path('/audit/', views.audit, name='audit'), + path('/gene_search/', views.search_by_gene, name='gene_search'), ] + static(settings.STATIC_URL, document_root=settings.STATIC_DIR) urlpatterns += api_urlpatterns diff --git a/gelweb/gel2mdt/views.py b/gelweb/gel2mdt/views.py index a2e3cfab..7af7e1ad 100755 --- a/gelweb/gel2mdt/views.py +++ b/gelweb/gel2mdt/views.py @@ -226,7 +226,9 @@ def cancer_main(request): :param request: :return: ''' - return render(request, 'gel2mdt/cancer_main.html', {'sample_type': 'cancer'}) + gene_search_form = GeneSearchForm() + return render(request, 'gel2mdt/cancer_main.html', {'sample_type': 'cancer', + 'gene_search_form': gene_search_form}) @login_required @@ -238,7 +240,31 @@ def rare_disease_main(request): :param request: :return: ''' - return render(request, 'gel2mdt/rare_disease_main.html', {'sample_type': 'raredisease'}) + gene_search_form = GeneSearchForm() + return render(request, 'gel2mdt/rare_disease_main.html', {'sample_type': 'raredisease', + 'gene_search_form': gene_search_form}) + + +@login_required +def search_by_gene(request, sample_type): + latest_reports = GELInterpretationReport.objects.latest_cases_by_sample_type( + sample_type=sample_type + ) + gene_search_form = GeneSearchForm() + proband_variants = [] + gene = None + if request.method == 'POST': + gene_search_form = GeneSearchForm(request.POST) + if gene_search_form.is_valid(): + gene = gene_search_form.cleaned_data['gene'] + genes = Gene.objects.filter(hgnc_name__icontains=gene_search_form.cleaned_data['gene']) + proband_variants = ProbandVariant.objects.filter(probandtranscriptvariant__transcript__gene__in=genes, + interpretation_report__in=latest_reports).distinct() + return render(request, 'gel2mdt/gene_search.html', {'gene_search_form': gene_search_form, + 'proband_variants': proband_variants, + 'gene': gene, + 'sample_type': sample_type}) + @login_required From 71e3847cf85e1916da98527eb89e667d4933106a Mon Sep 17 00:00:00 2001 From: Patrick Lombard Date: Thu, 13 Sep 2018 14:23:27 +0100 Subject: [PATCH 07/10] missing html! --- .../templates/gel2mdt/gene_search.html | 138 ++++++++++++++++++ 1 file changed, 138 insertions(+) create mode 100755 gelweb/gel2mdt/templates/gel2mdt/gene_search.html diff --git a/gelweb/gel2mdt/templates/gel2mdt/gene_search.html b/gelweb/gel2mdt/templates/gel2mdt/gene_search.html new file mode 100755 index 00000000..be12391c --- /dev/null +++ b/gelweb/gel2mdt/templates/gel2mdt/gene_search.html @@ -0,0 +1,138 @@ + +{% extends 'gel2mdt/base.html' %} +{% load bootstrap3 %} +{% load static %} + + +{% block tabs %} + +
    + {% if sample_type == 'cancer' %} +
  • Cases
    • +
+ {% elif sample_type == 'raredisease' %} +
  • Cases
    • + + {% endif %} + + + + + +{% endblock %} + + + +{% block content %} + {% load gel2mdt_extras %} +
    +
    + {% csrf_token %} + + + + + + +
    {% bootstrap_form gene_search_form %}
    + + + +
    +
    +
    +
    +
    + {% if gene %} + Variants in {{ gene }} + {% endif %} +
    + +
    + + + + + + + + + + + + + + + + + + + + + {% for pv in proband_variants %} + + + + + + + + + + + + + + + + + {% endfor %} + +
    Variant LinkGeneCIP LinkGeL IDForenameSurnameGMCClinicianZygosityRecruiting DiseaseHGVScHGVSpHGVSg
    + + + + {{pv.get_transcript_variant.transcript.gene}} + + {{pv.interpretation_report.ir_family.ir_family_id}} + + {{pv.interpretation_report.ir_family.participant_family.proband.gel_id}}{{pv.interpretation_report.ir_family.participant_family.proband.forename}}{{pv.interpretation_report.ir_family.participant_family.proband.surname}}{{pv.interpretation_report.ir_family.participant_family.proband.gmc}}{{pv.interpretation_report.ir_family.participant_family.clinician.name}}{{pv.zygosity}}{{pv.interpretation_report.ir_family.participant_family.proband.recruiting_disease}}{{pv.get_transcript_variant.hgvs_c}}{{pv.get_transcript_variant.hgvs_p}}{{pv.get_transcript_variant.hgvs_g}}
    +
    + +
    + +
    + +
    +
    +{% endblock %} From ffce95f1ca7d4a2210fdec5e5b4771d813fb715c Mon Sep 17 00:00:00 2001 From: Patrick Lombard Date: Thu, 13 Sep 2018 14:42:32 +0100 Subject: [PATCH 08/10] formatting template fixed --- .../gel2mdt/templates/gel2mdt/gene_search.html | 18 +++++------------- 1 file changed, 5 insertions(+), 13 deletions(-) diff --git a/gelweb/gel2mdt/templates/gel2mdt/gene_search.html b/gelweb/gel2mdt/templates/gel2mdt/gene_search.html index be12391c..9287dea6 100755 --- a/gelweb/gel2mdt/templates/gel2mdt/gene_search.html +++ b/gelweb/gel2mdt/templates/gel2mdt/gene_search.html @@ -54,21 +54,13 @@ {% block content %} {% load gel2mdt_extras %}
    +
    - {% csrf_token %} - - - - - - -
    {% bootstrap_form gene_search_form %}
    - - - + {% csrf_token %} +{% bootstrap_form gene_search_form %} +
    +
    From 51e2ab78d1e226753554b16f775ce629c424d233 Mon Sep 17 00:00:00 2001 From: Patrick Lombard Date: Thu, 13 Sep 2018 14:51:42 +0100 Subject: [PATCH 09/10] minor mods to static --- .../gel2clin/raredisease_proband.html | 2 +- .../gel2mdt/static/css/bokeh-0.12.15.min.css | 1 + gelweb/gel2mdt/static/js/bokeh-0.12.15.min.js | 91 +++++++++++++++++++ gelweb/gel2mdt/templates/gel2mdt/audit.html | 5 +- 4 files changed, 96 insertions(+), 3 deletions(-) create mode 100644 gelweb/gel2mdt/static/css/bokeh-0.12.15.min.css create mode 100644 gelweb/gel2mdt/static/js/bokeh-0.12.15.min.js diff --git a/gelweb/gel2clin/templates/gel2clin/raredisease_proband.html b/gelweb/gel2clin/templates/gel2clin/raredisease_proband.html index b3cb455d..d20c89ba 100755 --- a/gelweb/gel2clin/templates/gel2clin/raredisease_proband.html +++ b/gelweb/gel2clin/templates/gel2clin/raredisease_proband.html @@ -19,7 +19,7 @@ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. --> -{% extends 'gel2mdt/base.html' %} +{% extends 'gel2clin/base.html' %} {% load bootstrap3 %} {% load static %} {% block content %} diff --git a/gelweb/gel2mdt/static/css/bokeh-0.12.15.min.css b/gelweb/gel2mdt/static/css/bokeh-0.12.15.min.css new file mode 100644 index 00000000..ba510c46 --- /dev/null +++ b/gelweb/gel2mdt/static/css/bokeh-0.12.15.min.css @@ -0,0 +1 @@ +.bk-root{font-family:"Helvetica Neue",Helvetica,Arial,sans-serif;font-size:10pt;position:relative;width:auto;height:auto}.bk-root .bk-shading{position:absolute;display:block;border:1px dashed green;z-index:100}.bk-root 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sourceMappingURL=bokeh.min.css.map diff --git a/gelweb/gel2mdt/static/js/bokeh-0.12.15.min.js b/gelweb/gel2mdt/static/js/bokeh-0.12.15.min.js new file mode 100644 index 00000000..aaf08903 --- /dev/null +++ b/gelweb/gel2mdt/static/js/bokeh-0.12.15.min.js @@ -0,0 +1,91 @@ +!function(t,e){t.Bokeh=function(t,e,i){var n={},r=function(i){var o=null!=e[i]?e[i]:i;if(!n[o]){if(!t[o]){var s=new Error("Cannot find module '"+i+"'");throw s.code="MODULE_NOT_FOUND",s}var a=n[o]={exports:{}};t[o].call(a.exports,r,a,a.exports)}return n[o].exports},o=r(52);return o.require=r,o.register_plugin=function(i,n,s){for(var a in i)t[a]=i[a];for(var a in n)e[a]=n[a];var l=r(s);for(var a in l)o[a]=l[a];return l},o}([function(t,e,i){var n=t(142),r=t(32);i.overrides={};var o=r.clone(n);i.Models=function(t){var e=i.overrides[t]||o[t];if(null==e)throw new Error("Model '"+t+"' does not exist. 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t._on_open(e,i)},t.socket.onmessage=function(e){return t._on_message(e)},t.socket.onclose=function(e){return t._on_close(e)},t.socket.onerror=function(){return t._on_error(i)}})}catch(t){return r.logger.error("websocket creation failed to url: "+this.url),r.logger.error(" - "+t),n.Promise.reject(t)}},t.prototype.close=function(){this.closed_permanently||(r.logger.debug("Permanently closing websocket connection "+this._number),this.closed_permanently=!0,null!=this.socket&&this.socket.close(1e3,"close method called on ClientConnection "+this._number),this.session._connection_closed(),null!=this._on_closed_permanently_hook&&(this._on_closed_permanently_hook(),this._on_closed_permanently_hook=null))},t.prototype._schedule_reconnect=function(t){var e=this;setTimeout(function(){e.closed_permanently||r.logger.info("Websocket connection "+e._number+" disconnected, will not attempt to reconnect");return},t)},t.prototype.send=function(t){if(null==this.socket)throw new Error("not connected so cannot send "+t);t.send(this.socket)},t.prototype.send_with_reply=function(t){var e=this,i=new n.Promise(function(i,n){e._pending_replies[t.msgid()]=[i,n],e.send(t)});return i.then(function(t){if("ERROR"===t.msgtype())throw new Error("Error reply "+t.content.text);return t},function(t){throw t})},t.prototype._pull_doc_json=function(){var t=s.Message.create("PULL-DOC-REQ",{}),e=this.send_with_reply(t);return e.then(function(t){if(!("doc"in t.content))throw new Error("No 'doc' field in PULL-DOC-REPLY");return t.content.doc},function(t){throw t})},t.prototype._repull_session_doc=function(){var t=this;null==this.session?r.logger.debug("Pulling session for first time"):r.logger.debug("Repulling session"),this._pull_doc_json().then(function(e){if(null==t.session)if(t.closed_permanently)r.logger.debug("Got new document after connection was already closed");else{var i=o.Document.from_json(e),n=o.Document._compute_patch_since_json(e,i);if(n.events.length>0){r.logger.debug("Sending "+n.events.length+" changes from model construction back to server");var a=s.Message.create("PATCH-DOC",{},n);t.send(a)}t.session=new l.ClientSession(t,i,t.id),r.logger.debug("Created a new session from new pulled doc"),null!=t._on_have_session_hook&&(t._on_have_session_hook(t.session),t._on_have_session_hook=null)}else t.session.document.replace_with_json(e),r.logger.debug("Updated existing session with new pulled doc")},function(t){throw t}).catch(function(t){null!=console.trace&&console.trace(t),r.logger.error("Failed to repull session "+t)})},t.prototype._on_open=function(t,e){var i=this;r.logger.info("Websocket connection "+this._number+" is now open"),this._pending_ack=[t,e],this._current_handler=function(t){i._awaiting_ack_handler(t)}},t.prototype._on_message=function(t){null==this._current_handler&&r.logger.error("Got a message with no current handler set");try{this._receiver.consume(t.data)}catch(t){this._close_bad_protocol(t.toString())}if(null!=this._receiver.message){var e=this._receiver.message,i=e.problem();null!=i&&this._close_bad_protocol(i),this._current_handler(e)}},t.prototype._on_close=function(t){var e=this;r.logger.info("Lost websocket "+this._number+" connection, "+t.code+" ("+t.reason+")"),this.socket=null,null!=this._pending_ack&&(this._pending_ack[1](new Error("Lost websocket connection, "+t.code+" ("+t.reason+")")),this._pending_ack=null);for(var i=function(){for(var t in e._pending_replies){var i=e._pending_replies[t];return delete e._pending_replies[t],i}return null},n=i();null!=n;)n[1]("Disconnected"),n=i();this.closed_permanently||this._schedule_reconnect(2e3)},t.prototype._on_error=function(t){r.logger.debug("Websocket error on socket "+this._number),t(new Error("Could not open websocket"))},t.prototype._close_bad_protocol=function(t){r.logger.error("Closing connection: "+t),null!=this.socket&&this.socket.close(1002,t)},t.prototype._awaiting_ack_handler=function(t){var e=this;"ACK"===t.msgtype()?(this._current_handler=function(t){return e._steady_state_handler(t)},this._repull_session_doc(),null!=this._pending_ack&&(this._pending_ack[0](this),this._pending_ack=null)):this._close_bad_protocol("First message was not an ACK")},t.prototype._steady_state_handler=function(t){if(t.reqid()in this._pending_replies){var e=this._pending_replies[t.reqid()];delete this._pending_replies[t.reqid()],e[0](t)}else this.session.handle(t)},t}();i.ClientConnection=c,i.pull_session=function(t,e,i){return new n.Promise(function(n,o){return new c(t,e,i,function(t){try{n(t)}catch(e){throw r.logger.error("Promise handler threw an error, closing session "+e),t.close(),e}},function(){o(new Error("Connection was closed before we successfully pulled a session"))}).connect().then(function(t){},function(t){throw r.logger.error("Failed to connect to Bokeh server "+t),t})})}},function(t,e,i){var n=t(14),r=t(50),o=t(260),s=function(){function t(t,e,i){var n=this;this._connection=t,this.document=e,this.id=i,this._document_listener=function(t){return n._document_changed(t)},this.document.on_change(this._document_listener),this.event_manager=this.document.event_manager,this.event_manager.session=this}return t.prototype.handle=function(t){var e=t.msgtype();"PATCH-DOC"===e?this._handle_patch(t):"OK"===e?this._handle_ok(t):"ERROR"===e?this._handle_error(t):n.logger.debug("Doing nothing with message "+t.msgtype())},t.prototype.close=function(){this._connection.close()},t.prototype.send_event=function(t){var e=o.Message.create("EVENT",{},JSON.stringify(t));this._connection.send(e)},t.prototype._connection_closed=function(){this.document.remove_on_change(this._document_listener)},t.prototype.request_server_info=function(){var t=o.Message.create("SERVER-INFO-REQ",{}),e=this._connection.send_with_reply(t);return e.then(function(t){return t.content})},t.prototype.force_roundtrip=function(){return this.request_server_info().then(function(t){})},t.prototype._document_changed=function(t){if(t.setter_id!==this.id&&(!(t instanceof r.ModelChangedEvent)||t.attr in t.model.serializable_attributes())){var e=o.Message.create("PATCH-DOC",{},this.document.create_json_patch([t]));this._connection.send(e)}},t.prototype._handle_patch=function(t){this.document.apply_json_patch(t.content,t.buffers,this.id)},t.prototype._handle_ok=function(t){n.logger.trace("Unhandled OK reply to "+t.reqid())},t.prototype._handle_error=function(t){n.logger.error("Unhandled ERROR reply to "+t.reqid()+": "+t.content.text)},t}();i.ClientSession=s},function(t,e,i){function n(t){return function(e){e.prototype.event_name=t,a[t]=e}}var r=t(379),o=t(14),s=t(32),a={};i.register_event_class=n,i.register_with_event=function(t){for(var e=[],i=1;i0&&(this._pending=!0);for(var h=0;h1)return r(t,i);var s={x:e.x+o*(i.x-e.x),y:e.y+o*(i.y-e.y)};return r(t,s)}var s=t(21),a=t(181);i.point_in_poly=function(t,e,i,n){for(var r=!1,o=i[i.length-1],s=n[n.length-1],a=0;an&&(s=[n,i],i=s[0],n=s[1]);r>o&&(a=[o,r],r=a[0],o=a[1]);return{minX:i,minY:r,maxX:n,maxY:o};var s,a},i.dist_2_pts=r,i.dist_to_segment_squared=o,i.dist_to_segment=function(t,e,i){return Math.sqrt(o(t,e,i))},i.check_2_segments_intersect=function(t,e,i,n,r,o,s,a){var l=(a-o)*(i-t)-(s-r)*(n-e);if(0==l)return{hit:!1,x:null,y:null};var h=e-o,c=t-r,u=(s-r)*h-(a-o)*c,_=(i-t)*h-(n-e)*c;c=_/l;var p=t+(h=u/l)*(i-t),d=e+h*(n-e);return{hit:h>0&&h<1&&c>0&&c<1,x:p,y:d}}},function(t,e,i){var n=t(13),r=t(21);i.vstack=function(t,e){var i=[];if(e.length>0){i.push(n.EQ(r.head(e)._bottom,[-1,t._bottom])),i.push(n.EQ(r.tail(e)._top,[-1,t._top])),i.push.apply(i,r.pairwise(e,function(t,e){return n.EQ(t._top,[-1,e._bottom])}));for(var o=0,s=e;o0){i.push(n.EQ(r.head(e)._right,[-1,t._right])),i.push(n.EQ(r.tail(e)._left,[-1,t._left])),i.push.apply(i,r.pairwise(e,function(t,e){return n.EQ(t._left,[-1,e._right])}));for(var o=0,s=e;o0){var n=r[e];return null==n&&(r[e]=n=new t(e,i)),n}throw new TypeError("Logger.get() expects a non-empty string name and an optional log-level")},Object.defineProperty(t.prototype,"level",{get:function(){return this.get_level()},enumerable:!0,configurable:!0}),t.prototype.get_level=function(){return this._log_level},t.prototype.set_level=function(e){if(e instanceof o)this._log_level=e;else{if(!n.isString(e)||null==t.log_levels[e])throw new Error("Logger.set_level() expects a log-level object or a string name of a log-level");this._log_level=t.log_levels[e]}var i="["+this._name+"]";for(var r in t.log_levels){var s=t.log_levels[r];s.level0){var p=this.source.selection_policy.hit_test(e,t);c=c||this.source.selection_policy.do_selection(p,this.source,i,n)}return c},e.prototype.inspect=function(t,e){var i=!1;if("GlyphRenderer"==t.model.type){var n=t.hit_test(e);i=!n.is_empty();var r=this.get_or_create_inspector(t.model);r.update(n,!0,!1),this.source.setv({inspected:r},{silent:!0}),this.source.inspect.emit([t,{geometry:e}])}else if(t.model instanceof s.GraphRenderer){var n=t.model.inspection_policy.hit_test(e,t);i=i||t.model.inspection_policy.do_inspection(n,e,t,!1,!1)}return i},e.prototype.clear=function(t){this.source.selected.clear(),null!=t&&this.get_or_create_inspector(t.model).clear()},e.prototype.get_or_create_inspector=function(t){return null==this.inspectors[t.id]&&(this.inspectors[t.id]=new o.Selection),this.inspectors[t.id]},e}(r.HasProps);i.SelectionManager=l,l.initClass()},function(t,e,i){var n=function(){function t(){this._dev=!1}return Object.defineProperty(t.prototype,"dev",{get:function(){return this._dev},set:function(t){this._dev=t},enumerable:!0,configurable:!0}),t}();i.Settings=n,i.settings=new n},function(t,e,i){function n(t,e,i,n){return l.find(t,function(t){return t.signal===e&&t.slot===i&&t.context===n})}function r(t){0===p.size&&a.defer(o),p.add(t)}function o(){p.forEach(function(t){l.removeBy(t,function(t){return null==t.signal})}),p.clear()}var s=t(379),a=t(25),l=t(21),h=function(){function t(t,e){this.sender=t,this.name=e}return t.prototype.connect=function(t,e){void 0===e&&(e=null),u.has(this.sender)||u.set(this.sender,[]);var i=u.get(this.sender);if(null!=n(i,this,t,e))return!1;var r=e||t;_.has(r)||_.set(r,[]);var o=_.get(r),s={signal:this,slot:t,context:e};return i.push(s),o.push(s),!0},t.prototype.disconnect=function(t,e){void 0===e&&(e=null);var i=u.get(this.sender);if(null==i||0===i.length)return!1;var o=n(i,this,t,e);if(null==o)return!1;var s=e||t,a=_.get(s);return o.signal=null,r(i),r(a),!0},t.prototype.emit=function(t){for(var e=u.get(this.sender)||[],i=0,n=e;i0;var p=function(){function t(t,e,i,n){this.plot_view=t,this.toolbar=e,this.hit_area=i,this.plot=n,this.pan_start=new o.Signal(this,"pan:start"),this.pan=new o.Signal(this,"pan"),this.pan_end=new o.Signal(this,"pan:end"),this.pinch_start=new o.Signal(this,"pinch:start"),this.pinch=new o.Signal(this,"pinch"),this.pinch_end=new o.Signal(this,"pinch:end"),this.rotate_start=new o.Signal(this,"rotate:start"),this.rotate=new o.Signal(this,"rotate"),this.rotate_end=new o.Signal(this,"rotate:end"),this.tap=new o.Signal(this,"tap"),this.doubletap=new o.Signal(this,"doubletap"),this.press=new o.Signal(this,"press"),this.move_enter=new o.Signal(this,"move:enter"),this.move=new o.Signal(this,"move"),this.move_exit=new o.Signal(this,"move:exit"),this.scroll=new o.Signal(this,"scroll"),this.keydown=new o.Signal(this,"keydown"),this.keyup=new o.Signal(this,"keyup"),this.hammer=new r(this.hit_area),this._configure_hammerjs()}return t.prototype._configure_hammerjs=function(){var t=this;this.hammer.get("doubletap").recognizeWith("tap"),this.hammer.get("tap").requireFailure("doubletap"),this.hammer.get("doubletap").dropRequireFailure("tap"),this.hammer.on("doubletap",function(e){return t._doubletap(e)}),this.hammer.on("tap",function(e){return t._tap(e)}),this.hammer.on("press",function(e){return t._press(e)}),this.hammer.get("pan").set({direction:r.DIRECTION_ALL}),this.hammer.on("panstart",function(e){return t._pan_start(e)}),this.hammer.on("pan",function(e){return t._pan(e)}),this.hammer.on("panend",function(e){return t._pan_end(e)}),this.hammer.get("pinch").set({enable:!0}),this.hammer.on("pinchstart",function(e){return t._pinch_start(e)}),this.hammer.on("pinch",function(e){return t._pinch(e)}),this.hammer.on("pinchend",function(e){return t._pinch_end(e)}),this.hammer.get("rotate").set({enable:!0}),this.hammer.on("rotatestart",function(e){return t._rotate_start(e)}),this.hammer.on("rotate",function(e){return t._rotate(e)}),this.hammer.on("rotateend",function(e){return t._rotate_end(e)}),this.hit_area.addEventListener("mousemove",function(e){return t._mouse_move(e)}),this.hit_area.addEventListener("mouseenter",function(e){return t._mouse_enter(e)}),this.hit_area.addEventListener("mouseleave",function(e){return t._mouse_exit(e)}),this.hit_area.addEventListener("wheel",function(e){return t._mouse_wheel(e)}),document.addEventListener("keydown",function(e){return t._key_down(e)}),document.addEventListener("keyup",function(e){return t._key_up(e)})},t.prototype.register_tool=function(t){var e=this,i=t.model.event_type;null!=i&&(u.isString(i)?this._register_tool(t,i):i.forEach(function(i,n){return e._register_tool(t,i,n<1)}))},t.prototype._register_tool=function(t,e,n){void 0===n&&(n=!0);var r=t,o=r.model.id,a=function(t){return function(e){e.id==o&&t(e.e)}},l=function(t){return function(e){t(e.e)}};switch(e){case"pan":null!=r._pan_start&&r.connect(this.pan_start,a(r._pan_start.bind(r))),null!=r._pan&&r.connect(this.pan,a(r._pan.bind(r))),null!=r._pan_end&&r.connect(this.pan_end,a(r._pan_end.bind(r)));break;case"pinch":null!=r._pinch_start&&r.connect(this.pinch_start,a(r._pinch_start.bind(r))),null!=r._pinch&&r.connect(this.pinch,a(r._pinch.bind(r))),null!=r._pinch_end&&r.connect(this.pinch_end,a(r._pinch_end.bind(r)));break;case"rotate":null!=r._rotate_start&&r.connect(this.rotate_start,a(r._rotate_start.bind(r))),null!=r._rotate&&r.connect(this.rotate,a(r._rotate.bind(r))),null!=r._rotate_end&&r.connect(this.rotate_end,a(r._rotate_end.bind(r)));break;case"move":null!=r._move_enter&&r.connect(this.move_enter,a(r._move_enter.bind(r))),null!=r._move&&r.connect(this.move,a(r._move.bind(r))),null!=r._move_exit&&r.connect(this.move_exit,a(r._move_exit.bind(r)));break;case"tap":null!=r._tap&&r.connect(this.tap,a(r._tap.bind(r)));break;case"press":null!=r._press&&r.connect(this.press,a(r._press.bind(r)));break;case"scroll":null!=r._scroll&&r.connect(this.scroll,a(r._scroll.bind(r)));break;default:throw new Error("unsupported event_type: "+e)}n&&(null!=r._doubletap&&r.connect(this.doubletap,l(r._doubletap.bind(r))),null!=r._keydown&&r.connect(this.keydown,l(r._keydown.bind(r))),null!=r._keyup&&r.connect(this.keyup,l(r._keyup.bind(r))),i.is_mobile&&null!=r._scroll&&"pinch"==e&&(s.logger.debug("Registering scroll on touch screen"),r.connect(this.scroll,a(r._scroll.bind(r)))))},t.prototype._hit_test_renderers=function(t,e){for(var i=this.plot_view.get_renderer_views(),n=0,r=h.reversed(i);n0,"'step' must be a positive number"),null==e&&(e=t,t=0);for(var n=Math.max,r=Math.ceil,o=Math.abs,s=t<=e?i:-i,a=n(r(o(e-t)/i),0),l=Array(a),c=0;c0?0:n-1;r>=0&&r=0?e:t.length+e]},i.zip=function(t,e){for(var i=Math.min(t.length,e.length),n=new Array(i),r=0;rn||void 0===i)return 1;if(io&&(e=o),null==i||i>o-e?i=o-e:i<0&&(i=0);for(var s=o-i+n.length,a=new t.constructor(s),l=0;li&&(i=e);return i},i.maxBy=function(t,e){if(0==t.length)throw new Error("maxBy() called with an empty array");for(var i=t[0],n=e(i),r=1,o=t.length;rn&&(i=s,n=a)}return i},i.sum=function(t){for(var e=0,i=0,n=t.length;i=0&&c>=0))throw new Error("invalid bbox {x: "+a+", y: "+l+", width: "+h+", height: "+c+"}");this.x0=a,this.y0=l,this.x1=a+h,this.y1=l+c}}return Object.defineProperty(t.prototype,"minX",{get:function(){return this.x0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"minY",{get:function(){return this.y0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"maxX",{get:function(){return this.x1},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"maxY",{get:function(){return this.y1},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"left",{get:function(){return this.x0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"top",{get:function(){return this.y0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"right",{get:function(){return this.x1},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"bottom",{get:function(){return this.y1},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"p0",{get:function(){return[this.x0,this.y0]},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"p1",{get:function(){return[this.x1,this.y1]},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"x",{get:function(){return this.x0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"y",{get:function(){return this.y0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"width",{get:function(){return this.x1-this.x0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"height",{get:function(){return this.y1-this.y0},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"rect",{get:function(){return{x:this.x,y:this.y,width:this.width,height:this.height}},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"h_range",{get:function(){return{start:this.x0,end:this.x1}},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"v_range",{get:function(){return{start:this.y0,end:this.y1}},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"ranges",{get:function(){return[this.h_range,this.v_range]},enumerable:!0,configurable:!0}),Object.defineProperty(t.prototype,"aspect",{get:function(){return this.width/this.height},enumerable:!0,configurable:!0}),t.prototype.contains=function(t,e){return t>=this.x0&&t<=this.x1&&e>=this.y0&&e<=this.y1},t.prototype.clip=function(t,e){return tthis.x1&&(t=this.x1),ethis.y1&&(e=this.y1),[t,e]},t.prototype.union=function(e){return new 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u.unzip(n)};this._width_formats={microseconds:e(this.microseconds),milliseconds:e(this.milliseconds),seconds:e(this.seconds),minsec:e(this.minsec),minutes:e(this.minutes),hourmin:e(this.hourmin),hours:e(this.hours),days:e(this.days),months:e(this.months),years:e(this.years)}},e.prototype._get_resolution_str=function(t,e){var i=1.1*t;switch(!1){case!(i<.001):return"microseconds";case!(i<1):return"milliseconds";case!(i<60):return e>=60?"minsec":"seconds";case!(i<3600):return e>=3600?"hourmin":"minutes";case!(i<86400):return"hours";case!(i<2678400):return"days";case!(i<31536e3):return"months";default:return"years"}},e.prototype.doFormat=function(t,e){if(0==t.length)return[];for(var i=Math.abs(t[t.length-1]-t[0])/1e3,o=i/(t.length-1),s=this._get_resolution_str(o,i),a=this._width_formats[s],l=a[1],c=l[0],u=[],_=p.indexOf(s),d={},f=0,v=p;f0&&r[o]==r[o-1]){n=!0;break}return n?this.basic_formatter.doFormat(t,e):r},e}(r.TickFormatter);i.LogTickFormatter=l,l.initClass()},function(t,e,i){var n=t(379),r=t(96),o=t(15),s=t(33),a=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="MercatorTickFormatter",this.define({dimension:[o.LatLon]})},e.prototype.doFormat=function(e,i){if(null==this.dimension)throw new Error("MercatorTickFormatter.dimension not configured");if(0==e.length)return[];var n=e.length,r=new Array(n);if("lon"==this.dimension)for(var o=0;o=x&&f.push([y,S])}for(var C=this.model.properties.direction.value(),T=[],A=0,E=f;A=v&&c.push([d,k])}return o.create_hit_test_result_from_hits(c)},e.prototype.draw_legend_for_index=function(t,e,i){var n=e.x0,r=e.y0,o=e.x1,s=e.y1,a=i+1,l=new Array(a);l[i]=(n+o)/2;var h=new Array(a);h[i]=(r+s)/2;var c=.5*Math.min(Math.abs(o-n),Math.abs(s-r)),u=new Array(a);u[i]=.4*c;var _=new Array(a);_[i]=.8*c,this._render(t,[i],{sx:l,sy:h,sinner_radius:u,souter_radius:_})},e}(r.XYGlyphView);i.AnnulusView=l;var h=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="Annulus",this.prototype.default_view=l,this.mixins(["line","fill"]),this.define({inner_radius:[s.DistanceSpec],outer_radius:[s.DistanceSpec]})},e}(r.XYGlyph);i.Annulus=h,h.initClass()},function(t,e,i){var n=t(379),r=t(135),o=t(132),s=t(15),a=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype._map_data=function(){"data"==this.model.properties.radius.units?this.sradius=this.sdist(this.renderer.xscale,this._x,this._radius):this.sradius=this._radius},e.prototype._render=function(t,e,i){var n=i.sx,r=i.sy,o=i.sradius,s=i._start_angle,a=i._end_angle;if(this.visuals.line.doit)for(var l=this.model.properties.direction.value(),h=0,c=e;h1?(_[i]=u,p[i]=u/c):(_[i]=u*c,p[i]=u),this._render(t,[i],{sx:l,sy:h,sw:_,sh:p})},e.prototype._bounds=function(t){var e=t.minX,i=t.maxX,n=t.minY,r=t.maxY;return{minX:e-this.max_w2,maxX:i+this.max_w2,minY:n-this.max_h2,maxY:r+this.max_h2}},e}(r.XYGlyphView);i.EllipseView=s;var a=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="Ellipse",this.prototype.default_view=s,this.mixins(["line","fill"]),this.define({angle:[o.AngleSpec,0],width:[o.DistanceSpec],height:[o.DistanceSpec]})},e}(r.XYGlyph);i.Ellipse=a,a.initClass()},function(t,e,i){var n=t(379),r=t(9),o=t(15),s=t(24),a=t(33),l=t(49),h=t(48),c=t(53),u=t(14),_=t(22),p=t(32),d=t(44),f=t(120),v=t(165),m=function(e){function i(){var t=null!==e&&e.apply(this,arguments)||this;return t._nohit_warned={},t}return n.__extends(i,e),i.prototype.initialize=function(i){e.prototype.initialize.call(this,i),this._nohit_warned={},this.renderer=i.renderer,this.visuals=new l.Visuals(this.model);var n=this.renderer.plot_view.gl;if(null!=n){var r=null;try{r=t(440)}catch(t){if("MODULE_NOT_FOUND"!==t.code)throw t;u.logger.warn("WebGL was requested and is supported, but bokeh-gl(.min).js is not available, falling back to 2D rendering.")}if(null!=r){var o=r[this.model.type+"GLGlyph"];null!=o&&(this.glglyph=new o(n.ctx,this))}}},i.prototype.set_visuals=function(t){this.visuals.warm_cache(t),null!=this.glglyph&&this.glglyph.set_visuals_changed()},i.prototype.render=function(t,e,i){t.beginPath(),null!=this.glglyph&&this.glglyph.render(t,e,i)||this._render(t,e,i)},i.prototype.has_finished=function(){return!0},i.prototype.notify_finished=function(){this.renderer.notify_finished()},i.prototype._bounds=function(t){return t},i.prototype.bounds=function(){return this._bounds(this.index.bbox)},i.prototype.log_bounds=function(){for(var t=s.empty(),e=this.index.search(s.positive_x()),i=0,n=e;it.maxX&&(t.maxX=r.maxX)}for(var o=this.index.search(s.positive_y()),a=0,l=o;at.maxY&&(t.maxY=h.maxY)}return this._bounds(t)},i.prototype.get_anchor_point=function(t,e,i){var n=i[0],r=i[1];switch(t){case"center":return{x:this.scenterx(e,n,r),y:this.scentery(e,n,r)};default:return null}},i.prototype.sdist=function(t,e,i,n,r){void 0===n&&(n="edge"),void 0===r&&(r=!1);var o,s,a=e.length;if("center"==n){var l=_.map(i,function(t){return t/2});o=new Float64Array(a);for(var h=0;h0){n=this._image[e];var r=this._image_shape[e];this._height[e]=r[0],this._width[e]=r[1]}else{var o=this._image[e];n=a.concat(o),this._height[e]=o.length,this._width[e]=o[0].length}var s=this.image_data[e],l=void 0;null!=s&&s.width==this._width[e]&&s.height==this._height[e]?l=s:((l=document.createElement("canvas")).width=this._width[e],l.height=this._height[e]);var h=l.getContext("2d"),c=h.getImageData(0,0,this._width[e],this._height[e]),u=t.v_compute(n);c.data.set(u),h.putImageData(c,0,0),this.image_data[e]=l,this.max_dw=0,"data"==this.model.properties.dw.units&&(this.max_dw=a.max(this._dw)),this.max_dh=0,"data"==this.model.properties.dh.units&&(this.max_dh=a.max(this._dh))}},e.prototype._map_data=function(){switch(this.model.properties.dw.units){case"data":this.sw=this.sdist(this.renderer.xscale,this._x,this._dw,"edge",this.model.dilate);break;case"screen":this.sw=this._dw}switch(this.model.properties.dh.units){case"data":this.sh=this.sdist(this.renderer.yscale,this._y,this._dh,"edge",this.model.dilate);break;case"screen":this.sh=this._dh}},e.prototype._render=function(t,e,i){var n=i.image_data,r=i.sx,o=i.sy,s=i.sw,a=i.sh,l=t.getImageSmoothingEnabled();t.setImageSmoothingEnabled(!1),t.globalAlpha=this.model.global_alpha;for(var h=0,c=e;h0){n=this._image[e].buffer;var r=this._image_shape[e];this._height[e]=r[0],this._width[e]=r[1]}else{var o=this._image[e],a=s.concat(o);n=new ArrayBuffer(4*a.length);for(var l=new Uint32Array(n),h=0,c=a.length;h0?(o.logger.trace("ImageURL failed to load "+t._url[e]+" image, retrying in "+r+" ms"),setTimeout(function(){return a.src=t._url[e]},r)):o.logger.warn("ImageURL unable to load "+t._url[e]+" image after "+n+" retries"),t.retries[e]-=1},a.onload=function(){t.image[e]=a,t.renderer.request_render()},a.src=l._url[e]},l=this,h=0,c=this._url.length;h1&&(t.stroke(),o=!1)}o?t.lineTo(n[h],r[h]):(t.beginPath(),t.moveTo(n[h],r[h]),o=!0),s=h}o&&t.stroke()},e.prototype._hit_point=function(t){for(var e=this,i=s.create_empty_hit_test_result(),n={x:t.sx,y:t.sy},r=9999,o=Math.max(2,this.visuals.line.line_width.value()/2),a=0,l=this.sx.length-1;a0&&(l[h]=u)}return a.indices=s.keys(l).map(function(t){return parseInt(t,10)}),a.multiline_indices=l,a},e.prototype.get_interpolation_hit=function(t,e,i){var n,r,s,a,l=i.sx,h=i.sy,c=this._xs[t][e],u=this._ys[t][e],_=this._xs[t][e+1],p=this._ys[t][e+1];"point"==i.type?(m=this.renderer.yscale.r_invert(h-1,h+1),s=m[0],a=m[1],g=this.renderer.xscale.r_invert(l-1,l+1),n=g[0],r=g[1]):"v"==i.direction?(y=this.renderer.yscale.r_invert(h,h),s=y[0],a=y[1],n=(b=[c,_])[0],r=b[1]):(x=this.renderer.xscale.r_invert(l,l),n=x[0],r=x[1],s=(w=[u,p])[0],a=w[1]);var d=o.check_2_segments_intersect(n,s,r,a,c,u,_,p),f=d.x,v=d.y;return[f,v];var m,g,y,b,x,w},e.prototype.draw_legend_for_index=function(t,e,i){c.generic_line_legend(this.visuals,t,e,i)},e.prototype.scenterx=function(){throw new Error("not implemented")},e.prototype.scentery=function(){throw new Error("not implemented")},e}(h.GlyphView);i.MultiLineView=u;var _=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="MultiLine",this.prototype.default_view=u,this.coords([["xs","ys"]]),this.mixins(["line"])},e}(h.Glyph);i.MultiLine=_,_.initClass()},function(t,e,i){var n=t(379),r=t(135),o=t(15),s=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype._set_data=function(){this.max_w2=0,"data"==this.model.properties.width.units&&(this.max_w2=this.max_width/2),this.max_h2=0,"data"==this.model.properties.height.units&&(this.max_h2=this.max_height/2)},e.prototype._map_data=function(){"data"==this.model.properties.width.units?this.sw=this.sdist(this.renderer.xscale,this._x,this._width,"center"):this.sw=this._width,"data"==this.model.properties.height.units?this.sh=this.sdist(this.renderer.yscale,this._y,this._height,"center"):this.sh=this._height},e.prototype._render=function(t,e,i){for(var n=i.sx,r=i.sy,o=i.sw,s=i.sh,a=i._angle,l=0,h=e;l1?(_[i]=u,p[i]=u/c):(_[i]=u*c,p[i]=u),this._render(t,[i],{sx:l,sy:h,sw:_,sh:p})},e.prototype._bounds=function(t){var e=t.minX,i=t.maxX,n=t.minY,r=t.maxY;return{minX:e-this.max_w2,maxX:i+this.max_w2,minY:n-this.max_h2,maxY:r+this.max_h2}},e}(r.XYGlyphView);i.OvalView=s;var a=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="Oval",this.prototype.default_view=s,this.mixins(["line","fill"]),this.define({angle:[o.AngleSpec,0],width:[o.DistanceSpec],height:[o.DistanceSpec]})},e}(r.XYGlyph);i.Oval=a,a.initClass()},function(t,e,i){var n=t(379),r=t(135),o=t(132),s=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype._render=function(t,e,i){var n=i.sx,r=i.sy;if(this.visuals.fill.doit){this.visuals.fill.set_value(t);for(var o=0,s=e;o0;){var o=a.findLastIndex(r,function(t){return h.isStrictNaN(t)}),s=void 0;o>=0?s=r.splice(o):(s=r,r=[]);var l=s.filter(function(t){return!h.isStrictNaN(t)});e[i].push(l)}}return e},e.prototype._index_data=function(){for(var t=this._build_discontinuous_object(this._xs),e=this._build_discontinuous_object(this._ys),i=[],n=0,o=this._xs.length;n=0,x=i-this.sy1[a]<=this.sh[a]&&i-this.sy1[a]>=0;x&&w&&m.push(a)}var A=s.create_empty_hit_test_result();return A.indices=m,A},e.prototype._map_dist_corner_for_data_side_length=function(t,e,i){for(var n=t.length,r=new Float64Array(n),o=new Float64Array(n),s=0;so[1]&&(e=o[1]);else{t=o[0],e=o[1];for(var s=0,l=this.plot.select(r.Axis);s1?y[1]:"",w=this._horizontal?"row":"col";g=b+" "+w+"-"+o+"-"+a+"-"+x}else g=v;s[g]=g in s?s[g].concat(m):m}a++}return s},e.prototype._align_inner_cell_edges_constraints=function(){var t=[];if(null!=this.document&&s.includes(this.document.roots(),this)){var e=this._flatten_cell_edge_variables(this._horizontal);for(var i in e){var n=e[i];if(n.length>1)for(var o=n[0],a=1;a0)if(this._horizontal==t){var r=i[0],o=i[i.length-1];r instanceof e?n[0]=n[0].concat(r._find_edge_leaves(t)[0]):n[0].push(r),o instanceof e?n[1]=n[1].concat(o._find_edge_leaves(t)[1]):n[1].push(o)}else for(var s=0,a=i;s1)for(var e=t[0],i=1;i0?this.model._width.value-20+"px":"100%",this.el.style.width=i}},e.prototype.get_height=function(){var t=0;for(var e in this.child_views){var i=this.child_views[e],n=i.el,r=getComputedStyle(n),o=parseInt(r.marginTop)||0,s=parseInt(r.marginBottom)||0;t+=n.offsetHeight+o+s}return t+20},e.prototype.get_width=function(){if(null!=this.model.width)return this.model.width;var t=this.el.scrollWidth+20;for(var e in this.child_views){var i=this.child_views[e],n=i.el.scrollWidth;n>t&&(t=n)}return t},e}(a.LayoutDOMView);i.WidgetBoxView=l;var h=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="WidgetBox",this.prototype.default_view=l,this.define({children:[o.Array,[]]})},e.prototype.initialize=function(){t.prototype.initialize.call(this),"fixed"==this.sizing_mode&&null==this.width&&(this.width=300,r.logger.info("WidgetBox mode is fixed, but no width specified. Using default of 300."))},e.prototype.get_constrained_variables=function(){var e=s.extend({},t.prototype.get_constrained_variables.call(this),{on_edge_align_top:this._top,on_edge_align_bottom:this._height_minus_bottom,on_edge_align_left:this._left,on_edge_align_right:this._width_minus_right,box_cell_align_top:this._top,box_cell_align_bottom:this._height_minus_bottom,box_cell_align_left:this._left,box_cell_align_right:this._width_minus_right,box_equal_size_top:this._top,box_equal_size_bottom:this._height_minus_bottom});return"fixed"!=this.sizing_mode&&(e.box_equal_size_left=this._left,e.box_equal_size_right=this._width_minus_right),e},e.prototype.get_layoutable_children=function(){return this.children},e}(a.LayoutDOM);i.WidgetBox=h,h.initClass()},function(t,e,i){var n=t(379),r=t(151),o=t(15),s=t(21),a=t(44),l=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="CategoricalColorMapper",this.define({factors:[o.Array],start:[o.Number,0],end:[o.Number]})},e.prototype._v_compute=function(t,e,i,n){for(var r=n.nan_color,o=function(n,o){var h=t[n],c=void 0;a.isString(h)?c=l.factors.indexOf(h):(null!=l.start?h=null!=l.end?h.slice(l.start,l.end):h.slice(l.start):null!=l.end&&(h=h.slice(0,l.end)),c=1==h.length?l.factors.indexOf(h[0]):s.findIndex(l.factors,function(t){return function(t,e){if(t.length!=e.length)return!1;for(var i=0,n=t.length;i=i.length?r:i[c],e[n]=u},l=this,h=0,c=t.length;hc?null!=a?a:i[c]:i[m]}else e[p]=i[c]}},e}(r.ContinuousColorMapper);i.LinearColorMapper=s,s.initClass()},function(t,e,i){var n=t(379),r=t(152),o=t(22),s=null!=Math.log1p?Math.log1p:function(t){return Math.log(1+t)},a=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="LogColorMapper"},e.prototype._v_compute=function(t,e,i,n){for(var r=n.nan_color,a=n.low_color,l=n.high_color,h=i.length,c=null!=this.low?this.low:o.min(t),u=null!=this.high?this.high:o.max(t),_=h/(s(u)-s(c)),p=i.length-1,d=0,f=t.length;du)e[d]=null!=l?l:i[p];else if(v!=u)if(vp&&(g=p),e[d]=i[g]}else e[d]=i[p]}},e}(r.ContinuousColorMapper);i.LogColorMapper=a,a.initClass()},function(t,e,i){function n(t,e){t.moveTo(-e,e),t.lineTo(e,-e),t.moveTo(-e,-e),t.lineTo(e,e)}function r(t,e){t.moveTo(0,e),t.lineTo(0,-e),t.moveTo(-e,0),t.lineTo(e,0)}function o(t,e){t.moveTo(0,e),t.lineTo(e/1.5,0),t.lineTo(0,-e),t.lineTo(-e/1.5,0),t.closePath()}function s(t,e){var i=e*c,n=i/3;t.moveTo(-e,n),t.lineTo(e,n),t.lineTo(0,n-i),t.closePath()}function a(t,e){var i=function(t){function i(){return null!==t&&t.apply(this,arguments)||this}return l.__extends(i,t),i.initClass=function(){this.prototype._render_one=e},i}(h.MarkerView);i.initClass();var n=function(e){function n(){return null!==e&&e.apply(this,arguments)||this}return l.__extends(n,e),n.initClass=function(){this.prototype.default_view=i,this.prototype.type=t},n}(h.Marker);return n.initClass(),n}var l=t(379),h=t(157),c=Math.sqrt(3);i.Asterisk=a("Asterisk",function(t,e,i,o,s){var a=.65*i;r(t,i),n(t,a),o.doit&&(o.set_vectorize(t,e),t.stroke())}),i.CircleCross=a("CircleCross",function(t,e,i,n,o){t.arc(0,0,i,0,2*Math.PI,!1),o.doit&&(o.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),r(t,i),t.stroke())}),i.CircleX=a("CircleX",function(t,e,i,r,o){t.arc(0,0,i,0,2*Math.PI,!1),o.doit&&(o.set_vectorize(t,e),t.fill());r.doit&&(r.set_vectorize(t,e),n(t,i),t.stroke())}),i.Cross=a("Cross",function(t,e,i,n,o){r(t,i),n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.Diamond=a("Diamond",function(t,e,i,n,r){o(t,i),r.doit&&(r.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.DiamondCross=a("DiamondCross",function(t,e,i,n,s){o(t,i),s.doit&&(s.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),r(t,i),t.stroke())}),i.Hex=a("Hex",function(t,e,i,n,r){(function(t,e){var i=e/2,n=c*i;t.moveTo(e,0),t.lineTo(i,-n),t.lineTo(-i,-n),t.lineTo(-e,0),t.lineTo(-i,n),t.lineTo(i,n),t.closePath()})(t,i),r.doit&&(r.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.InvertedTriangle=a("InvertedTriangle",function(t,e,i,n,r){t.rotate(Math.PI),s(t,i),t.rotate(-Math.PI),r.doit&&(r.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.Square=a("Square",function(t,e,i,n,r){var o=2*i;t.rect(-i,-i,o,o),r.doit&&(r.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.SquareCross=a("SquareCross",function(t,e,i,n,o){var s=2*i;t.rect(-i,-i,s,s),o.doit&&(o.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),r(t,i),t.stroke())}),i.SquareX=a("SquareX",function(t,e,i,r,o){var s=2*i;t.rect(-i,-i,s,s),o.doit&&(o.set_vectorize(t,e),t.fill());r.doit&&(r.set_vectorize(t,e),n(t,i),t.stroke())}),i.Triangle=a("Triangle",function(t,e,i,n,r){s(t,i),r.doit&&(r.set_vectorize(t,e),t.fill());n.doit&&(n.set_vectorize(t,e),t.stroke())}),i.X=a("X",function(t,e,i,r,o){n(t,i),r.doit&&(r.set_vectorize(t,e),t.stroke())})},function(t,e,i){var n=t(379),r=t(135),o=t(9),s=t(15),a=t(21),l=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype._render=function(t,e,i){for(var n=i.sx,r=i.sy,o=i._size,s=i._angle,a=0,l=e;a=2){this.map.setZoom(r);var o=this._get_projected_bounds(),s=o[0],a=o[1];a-s<0&&this.map.setZoom(n)}this.unpause()}this._set_bokeh_ranges()},e.prototype._build_map=function(){var t=this,e=google.maps;this.map_types={satellite:e.MapTypeId.SATELLITE,terrain:e.MapTypeId.TERRAIN,roadmap:e.MapTypeId.ROADMAP,hybrid:e.MapTypeId.HYBRID};var i=this.model.plot.map_options,n={center:new e.LatLng(i.lat,i.lng),zoom:i.zoom,disableDefaultUI:!0,mapTypeId:this.map_types[i.map_type],scaleControl:i.scale_control};null!=i.styles&&(n.styles=JSON.parse(i.styles)),this.map=new e.Map(this.canvas_view.map_el,n),e.event.addListener(this.map,"idle",function(){return t._set_bokeh_ranges()}),e.event.addListener(this.map,"bounds_changed",function(){return t._set_bokeh_ranges()}),e.event.addListenerOnce(this.map,"tilesloaded",function(){return t._render_finished()}),this.connect(this.model.plot.properties.map_options.change,function(){return t._update_options()}),this.connect(this.model.plot.map_options.properties.styles.change,function(){return t._update_styles()}),this.connect(this.model.plot.map_options.properties.lat.change,function(){return t._update_center("lat")}),this.connect(this.model.plot.map_options.properties.lng.change,function(){return t._update_center("lng")}),this.connect(this.model.plot.map_options.properties.zoom.change,function(){return t._update_zoom()}),this.connect(this.model.plot.map_options.properties.map_type.change,function(){return t._update_map_type()}),this.connect(this.model.plot.map_options.properties.scale_control.change,function(){return t._update_scale_control()})},e.prototype._render_finished=function(){this._tiles_loaded=!0,this.notify_finished()},e.prototype.has_finished=function(){return t.prototype.has_finished.call(this)&&!0===this._tiles_loaded},e.prototype._get_latlon_bounds=function(){var t=this.map.getBounds(),e=t.getNorthEast(),i=t.getSouthWest(),n=i.lng(),r=e.lng(),o=i.lat(),s=e.lat();return[n,r,o,s]},e.prototype._get_projected_bounds=function(){var t=this._get_latlon_bounds(),e=t[0],i=t[1],n=t[2],r=t[3],s=o.wgs84_mercator.forward([e,n]),a=s[0],l=s[1],h=o.wgs84_mercator.forward([i,r]),c=h[0],u=h[1];return[a,c,l,u]},e.prototype._set_bokeh_ranges=function(){var t=this._get_projected_bounds(),e=t[0],i=t[1],n=t[2],r=t[3];this.frame.x_range.setv({start:e,end:i}),this.frame.y_range.setv({start:n,end:r})},e.prototype._update_center=function(t){var e=this.map.getCenter().toJSON();e[t]=this.model.plot.map_options[t],this.map.setCenter(e),this._set_bokeh_ranges()},e.prototype._update_map_type=function(){this.map.setOptions({mapTypeId:this.map_types[this.model.plot.map_options.map_type]})},e.prototype._update_scale_control=function(){this.map.setOptions({scaleControl:this.model.plot.map_options.scale_control})},e.prototype._update_options=function(){this._update_styles(),this._update_center("lat"),this._update_center("lng"),this._update_zoom(),this._update_map_type()},e.prototype._update_styles=function(){this.map.setOptions({styles:JSON.parse(this.model.plot.map_options.styles)})},e.prototype._update_zoom=function(){this.map.setOptions({zoom:this.model.plot.map_options.zoom}),this._set_bokeh_ranges()},e.prototype._map_hook=function(t,e){var i=e[0],n=e[1],r=e[2],o=e[3];this.canvas_view.map_el.style.top=n+"px",this.canvas_view.map_el.style.left=i+"px",this.canvas_view.map_el.style.width=r+"px",this.canvas_view.map_el.style.height=o+"px",null==this.map&&"undefined"!=typeof google&&null!=google.maps&&this._build_map()},e.prototype._paint_empty=function(t,e){var i=this.canvas._width.value,n=this.canvas._height.value,r=e[0],o=e[1],s=e[2],a=e[3];t.clearRect(0,0,i,n),t.beginPath(),t.moveTo(0,0),t.lineTo(0,n),t.lineTo(i,n),t.lineTo(i,0),t.lineTo(0,0),t.moveTo(r,o),t.lineTo(r+s,o),t.lineTo(r+s,o+a),t.lineTo(r,o+a),t.lineTo(r,o),t.closePath(),t.fillStyle=this.model.plot.border_fill_color,t.fill()},e}(s.PlotCanvasView);i.GMapPlotCanvasView=l;var h=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="GMapPlotCanvas",this.prototype.default_view=l},e.prototype.initialize=function(){this.use_map=!0,t.prototype.initialize.call(this)},e}(s.PlotCanvas);i.GMapPlotCanvas=h,h.initClass()},function(t,e,i){var n=t(158);i.MapOptions=n.MapOptions;var r=t(158);i.GMapOptions=r.GMapOptions;var o=t(158);i.GMapPlot=o.GMapPlot;var s=t(159);i.GMapPlotCanvas=s.GMapPlotCanvas;var a=t(161);i.Plot=a.Plot;var l=t(162);i.PlotCanvas=l.PlotCanvas},function(t,e,i){var n=t(379),r=t(13),o=t(14),s=t(15),a=t(21),l=t(32),h=t(44),c=t(146),u=t(68),_=t(176),p=t(247),d=t(69),f=t(162),v=t(184),m=t(169),g=t(3),y=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype.connect_signals=function(){t.prototype.connect_signals.call(this);this.connect(this.model.properties.title.change,function(){return o.logger.warn("Title object cannot be replaced. Try changing properties on title to update it after initialization.")})},e.prototype.css_classes=function(){return t.prototype.css_classes.call(this).concat("bk-plot-layout")},e.prototype.get_height=function(){return this.model._width.value/this.model.get_aspect_ratio()},e.prototype.get_width=function(){return this.model._height.value*this.model.get_aspect_ratio()},e.prototype.save=function(t){this.plot_canvas_view.save(t)},Object.defineProperty(e.prototype,"plot_canvas_view",{get:function(){return this.child_views[this.model.plot_canvas.id]},enumerable:!0,configurable:!0}),e}(c.LayoutDOMView);i.PlotView=y;var b=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="Plot",this.prototype.default_view=y,this.mixins(["line:outline_","fill:background_","fill:border_"]),this.define({toolbar:[s.Instance,function(){return new p.Toolbar}],toolbar_location:[s.Location,"right"],toolbar_sticky:[s.Boolean,!0],plot_width:[s.Number,600],plot_height:[s.Number,600],title:[s.Any,function(){return new u.Title({text:""})}],title_location:[s.Location,"above"],h_symmetry:[s.Bool,!0],v_symmetry:[s.Bool,!1],above:[s.Array,[]],below:[s.Array,[]],left:[s.Array,[]],right:[s.Array,[]],renderers:[s.Array,[]],x_range:[s.Instance],extra_x_ranges:[s.Any,{}],y_range:[s.Instance],extra_y_ranges:[s.Any,{}],x_scale:[s.Instance,function(){return new _.LinearScale}],y_scale:[s.Instance,function(){return new _.LinearScale}],lod_factor:[s.Number,10],lod_interval:[s.Number,300],lod_threshold:[s.Number,2e3],lod_timeout:[s.Number,500],hidpi:[s.Bool,!0],output_backend:[s.OutputBackend,"canvas"],min_border:[s.Number,5],min_border_top:[s.Number,null],min_border_left:[s.Number,null],min_border_bottom:[s.Number,null],min_border_right:[s.Number,null],inner_width:[s.Number],inner_height:[s.Number],layout_width:[s.Number],layout_height:[s.Number],match_aspect:[s.Bool,!1],aspect_scale:[s.Number,1]}),this.override({outline_line_color:"#e5e5e5",border_fill_color:"#ffffff",background_fill_color:"#ffffff"}),g.register_with_event(g.UIEvent,this)},e.prototype.initialize=function(){t.prototype.initialize.call(this);for(var e=0,i=l.values(this.extra_x_ranges).concat(this.x_range);el.end;if(!i){var u=this._get_weight_to_constrain_interval(l,h);u<1&&(h.start=u*h.start+(1-u)*l.start,h.end=u*h.end+(1-u)*l.end)}if(null!=l.bounds&&"auto"!=l.bounds){var _=l.bounds,p=_[0],d=_[1],f=Math.abs(h.end-h.start);c?(null!=p&&p>=h.end&&(r=!0,h.end=p,(e||i)&&(h.start=p+f)),null!=d&&d<=h.start&&(r=!0,h.start=d,(e||i)&&(h.end=d-f))):(null!=p&&p>=h.start&&(r=!0,h.start=p,(e||i)&&(h.end=p+f)),null!=d&&d<=h.end&&(r=!0,h.end=d,(e||i)&&(h.start=d-f)))}}if(!(i&&r&&n))for(var v=0,m=t;v0&&c0&&c>n&&(l=(n-h)/(c-h)),l=Math.max(0,Math.min(1,l))}return l},e.prototype.update_range=function(t,e,i,n){void 0===e&&(e=!1),void 0===i&&(i=!1),void 0===n&&(n=!0),this.pause();var r=this.frame,o=r.x_ranges,s=r.y_ranges;if(null==t){for(var a in o){var l=o[a];l.reset()}for(var h in s){var l=s[h];l.reset()}this.update_dataranges()}else{var c=[];for(var u in o){var l=o[u];c.push([l,t.xrs[u]])}for(var _ in s){var l=s[_];c.push([l,t.yrs[_]])}i&&this._update_ranges_together(c),this._update_ranges_individually(c,e,i,n)}this.unpause()},e.prototype.reset_range=function(){this.update_range(null)},e.prototype.build_levels=function(){for(var t=this.model.plot.all_renderers,e=k.keys(this.renderer_views),i=c.build_views(this.renderer_views,t,this.view_options()),n=w.difference(e,t.map(function(t){return t.id})),r=0,o=n;r=0&&in.lod_timeout&&e.interactive_stop(n),t.request_render()},n.lod_timeout):e.interactive_stop(n)}for(var r in this.renderer_views){var o=this.renderer_views[r];if(null==this.range_update_timestamp||o instanceof a.GlyphRendererView&&o.set_data_timestamp>this.range_update_timestamp){this.update_dataranges();break}}this.model.frame.update_scales();var s=this.canvas_view.ctx,l=this.canvas.pixel_ratio;s.save(),s.scale(l,l),s.translate(.5,.5);var h=[this.frame._left.value,this.frame._top.value,this.frame._width.value,this.frame._height.value];if(this._map_hook(s,h),this._paint_empty(s,h),this.prepare_webgl(l,h),s.save(),this.visuals.outline_line.doit){this.visuals.outline_line.set_value(s);var c=h[0],u=h[1],_=h[2],p=h[3];c+_==this.canvas._width.value&&(_-=1),u+p==this.canvas._height.value&&(p-=1),s.strokeRect(c,u,_,p)}s.restore(),this._paint_levels(s,["image","underlay","glyph"],h),this.blit_webgl(l),this._paint_levels(s,["annotation"],h),this._paint_levels(s,["overlay"]),null==this._initial_state_info.range&&this.set_initial_range(),s.restore(),this._has_finished||(this._has_finished=!0,this.notify_finished())}},e.prototype._paint_levels=function(t,e,i){t.save(),null!=i&&(t.beginPath(),t.rect.apply(t,i),t.clip());for(var n={},r=0;r0&&(e=e.filter(function(e){return h.includes(t,e.name)})),s.logger.debug("computed "+e.length+" renderers for DataRange1d "+this.id);for(var l=0,c=e;lu&&("start"==this.follow?n=i+c*u:"end"==this.follow&&(i=n-c*u)),[i,n];var _},e.prototype.update=function(t,e,i,n){if(!this.have_updated_interactively){var r=this.computed_renderers(),o=this._compute_plot_bounds(r,t);null!=n&&(o=this.adjust_bounds_for_aspect(o,n)),this._plot_bounds[i]=o;var s=this._compute_min_max(this._plot_bounds,e),a=s[0],l=s[1],h=this._compute_range(a,l),c=h[0],u=h[1];null!=this._initial_start&&("log"==this.scale_hint?this._initial_start>0&&(c=this._initial_start):c=this._initial_start),null!=this._initial_end&&("log"==this.scale_hint?this._initial_end>0&&(u=this._initial_end):u=this._initial_end);var _=[this.start,this.end],p=_[0],d=_[1];if(c!=p||u!=d){var f={};c!=p&&(f.start=c),u!=d&&(f.end=u),this.setv(f)}"auto"==this.bounds&&this.setv({bounds:[c,u]},{silent:!0}),this.change.emit()}},e.prototype.reset=function(){this.have_updated_interactively=!1,this.setv({range_padding:this._initial_range_padding,range_padding_units:this._initial_range_padding_units,follow:this._initial_follow,follow_interval:this._initial_follow_interval,default_span:this._initial_default_span},{silent:!0}),this.change.emit()},e}(r.DataRange);i.DataRange1d=c,c.initClass()},function(t,e,i){function n(t,e,i){void 0===i&&(i=0);for(var n={},r=0;rthis.end},enumerable:!0,configurable:!0}),e.prototype.reset=function(){this._set_auto_bounds(),this.start!=this._initial_start||this.end!=this._initial_end?this.setv({start:this._initial_start,end:this._initial_end}):this.change.emit()},e}(r.Range);i.Range1d=s,s.initClass()},function(t,e,i){var n=t(379),r=t(173),o=t(120),s=t(189),a=t(183),l=t(14),h=t(15),c=t(22),u=t(21),_=t(32),p=t(165),d={fill:{},line:{}},f={fill:{fill_alpha:.3,fill_color:"grey"},line:{line_alpha:.3,line_color:"grey"}},v={fill:{fill_alpha:.2},line:{}},m=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype.initialize=function(e){function i(t){var e=_.clone(a);return r&&_.extend(e,t.fill),o&&_.extend(e,t.line),new n.constructor(e)}t.prototype.initialize.call(this,e);var n=this.model.glyph,r=u.includes(n.mixins,"fill"),o=u.includes(n.mixins,"line"),a=_.clone(n.attributes);delete a.id,this.glyph=this.build_glyph_view(n);var l=this.model.selection_glyph;null==l?l=i({fill:{},line:{}}):"auto"===l&&(l=i(d)),this.selection_glyph=this.build_glyph_view(l);var h=this.model.nonselection_glyph;null==h?h=i({fill:{},line:{}}):"auto"===h&&(h=i(v)),this.nonselection_glyph=this.build_glyph_view(h);var c=this.model.hover_glyph;null!=c&&(this.hover_glyph=this.build_glyph_view(c));var p=this.model.muted_glyph;null!=p&&(this.muted_glyph=this.build_glyph_view(p));var m=i(f);this.decimated_glyph=this.build_glyph_view(m),this.xscale=this.plot_view.frame.xscales[this.model.x_range_name],this.yscale=this.plot_view.frame.yscales[this.model.y_range_name],this.set_data(!1),this.model.data_source instanceof s.RemoteDataSource&&this.model.data_source.setup()},e.prototype.build_glyph_view=function(t){return new t.default_view({model:t,renderer:this,plot_view:this.plot_view,parent:this})},e.prototype.connect_signals=function(){var e=this;t.prototype.connect_signals.call(this),this.connect(this.model.change,function(){return e.request_render()}),this.connect(this.model.glyph.change,function(){return e.set_data()}),this.connect(this.model.data_source.change,function(){return e.set_data()}),this.connect(this.model.data_source.streaming,function(){return e.set_data()}),this.connect(this.model.data_source.patching,function(t){return e.set_data(!0,t)}),this.connect(this.model.data_source._select,function(){return e.request_render()}),null!=this.hover_glyph&&this.connect(this.model.data_source.inspect,function(){return e.request_render()}),this.connect(this.model.properties.view.change,function(){return e.set_data()}),this.connect(this.model.view.change,function(){return e.set_data()});var i=this.plot_model.frame,n=i.x_ranges,r=i.y_ranges;for(var o in n){var s=n[o];s instanceof p.FactorRange&&this.connect(s.change,function(){return e.set_data()})}for(var a in r){var s=r[a];s instanceof p.FactorRange&&this.connect(s.change,function(){return e.set_data()})}this.connect(this.model.glyph.transformchange,function(){return e.set_data()})},e.prototype.have_selection_glyphs=function(){return null!=this.selection_glyph&&null!=this.nonselection_glyph},e.prototype.set_data=function(t,e){void 0===t&&(t=!0),void 0===e&&(e=null);var i=Date.now(),n=this.model.data_source;this.all_indices=this.model.view.indices,this.glyph.model.setv({x_range_name:this.model.x_range_name,y_range_name:this.model.y_range_name},{silent:!0}),this.glyph.set_data(n,this.all_indices,e),this.glyph.set_visuals(n),this.decimated_glyph.set_visuals(n),this.have_selection_glyphs()&&(this.selection_glyph.set_visuals(n),this.nonselection_glyph.set_visuals(n)),null!=this.hover_glyph&&this.hover_glyph.set_visuals(n),null!=this.muted_glyph&&this.muted_glyph.set_visuals(n);var r=this.plot_model.plot.lod_factor;this.decimated=[];for(var o=0,s=Math.floor(this.all_indices.length/r);o0?d["1d"].indices:function(){for(var t=[],e=0,i=Object.keys(d["2d"].indices);e0&&!i&&null!=y&&this.all_indices.length>y?(s=this.decimated,f=this.decimated_glyph,v=this.decimated_glyph,m=this.selection_glyph):(f=this.model.muted&&null!=this.muted_glyph?this.muted_glyph:this.glyph,v=this.nonselection_glyph,m=this.selection_glyph),null!=this.hover_glyph&&g.length&&(s=u.difference(s,g));var b,x=null;if(c.length&&this.have_selection_glyphs()){for(var w=Date.now(),k={},S=0,C=c;S0){for(var a=i[0],l=0,h=i;l0){for(var a=i[0],l=0,h=i;l0?this.selected_glyphs[0]:null},enumerable:!0,configurable:!0}),e.prototype.add_to_selected_glyphs=function(t){this.selected_glyphs.push(t)},e.prototype.update=function(t,e,i){this.final=e,i?this.update_through_union(t):(this.indices=t.indices,this.line_indices=t.line_indices,this.selected_glyphs=t.selected_glyphs,this.get_view=t.get_view,this.multiline_indices=t.multiline_indices)},e.prototype.clear=function(){this.final=!0,this.indices=[],this.line_indices=[],this.multiline_indices={},this.get_view=function(){return null},this.selected_glyphs=[]},e.prototype.is_empty=function(){return 0==this.indices.length&&0==this.line_indices.length},e.prototype.update_through_union=function(t){this.indices=s.union(t.indices,this.indices),this.selected_glyphs=s.union(t.selected_glyphs,this.selected_glyphs),this.line_indices=s.union(t.line_indices,this.line_indices),this.get_view()||(this.get_view=t.get_view),this.multiline_indices=a.merge(t.multiline_indices,this.multiline_indices)},e.prototype.update_through_intersection=function(t){this.indices=s.intersection(t.indices,this.indices),this.selected_glyphs=s.union(t.selected_glyphs,this.selected_glyphs),this.line_indices=s.union(t.line_indices,this.line_indices),this.get_view()||(this.get_view=t.get_view),this.multiline_indices=a.merge(t.multiline_indices,this.multiline_indices)},e}(r.Model);i.Selection=l,l.initClass()},function(t,e,i){var n=t(379),r=t(189),o=t(14),s=t(15),a=function(t){function e(e){var i=t.call(this,e)||this;return i.initialized=!1,i}return 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XMLHttpRequest;t.open(this.method,this.data_url,!0),t.withCredentials=!1,t.setRequestHeader("Content-Type",this.content_type);var e=this.http_headers;for(var i in e){var n=e[i];t.setRequestHeader(i,n)}return t},e.prototype.do_load=function(t,e,i){if(200===t.status){var n=JSON.parse(t.responseText);switch(e){case"replace":this.data=n;break;case"append":for(var r=this.data,o=0,s=this.columns();o0?this.indices=a.intersection.apply(this,e):this.source instanceof l.ColumnarDataSource&&(this.indices=this.source.get_indices()),this.indices_map_to_subset()},e.prototype.indices_map_to_subset=function(){this.indices_map={};for(var t=0;ti?n.slice(-i):n}if(_.isTypedArray(t)){var r=t.length+e.length;if(null!=i&&r>i){var o=r-i,s=t.length,n=void 0;t.length1&&o.logger.warn("Bokeh does not support Polygons with holes in, only exterior ring used.");for(var p=t.coordinates[0],u=0;u1&&o.logger.warn("Bokeh does not support Polygons with holes in, only exterior ring used."),v.push(y[0])}for(var c=v.reduce(r),u=0;ui&&l0&&h.length>0){for(var _=r/c,p=s.range(0,c).map(function(t){return t*_}),d=0,f=p.slice(1);d1?this.interval=(e[1]-e[0])*o.ONE_DAY:this.interval=31*o.ONE_DAY},e.prototype.get_ticks_no_defaults=function(t,e,i,n){var r=function(t,e){var i=o.last_month_no_later_than(new Date(t)),n=o.last_month_no_later_than(new Date(e));n.setUTCMonth(n.getUTCMonth()+1);var r=[],s=i;for(;r.push(o.copy_date(s)),s.setUTCMonth(s.getUTCMonth()+1),!(s>n););return r}(t,e),s=this.days,l=this.interval,h=a.concat(r.map(function(t){return function(t,e){for(var i=[],n=0,r=s;n0&&o.length>0){for(var f=_/s,v=r.range(0,s).map(function(t){return t*f}),m=0,g=v.slice(1);m0&&o.length>0){for(var E=Math.pow(l,A)/s,v=r.range(1,s+1).map(function(t){return t*E}),M=0,O=v;M1?this.interval=(e[1]-e[0])*o.ONE_MONTH:this.interval=12*o.ONE_MONTH},e.prototype.get_ticks_no_defaults=function(t,e,i,n){var r=function(t,e){var i=o.last_year_no_later_than(new Date(t)),n=o.last_year_no_later_than(new 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n.__extends(e,t),e.initClass=function(){this.prototype.type="YearsTicker"},e.prototype.initialize=function(){t.prototype.initialize.call(this),this.interval=s.ONE_YEAR,this.basic_ticker=new r.BasicTicker({num_minor_ticks:0})},e.prototype.get_ticks_no_defaults=function(t,e,i,n){var r=s.last_year_no_later_than(new Date(t)).getUTCFullYear(),o=s.last_year_no_later_than(new Date(e)).getUTCFullYear(),a=this.basic_ticker.get_ticks_no_defaults(r,o,i,n).major,l=a.map(function(t){return Date.UTC(t,0,1)}),h=l.filter(function(i){return t<=i&&i<=e});return{major:h,minor:[]}},e}(o.SingleIntervalTicker);i.YearsTicker=a,a.initClass()},function(t,e,i){var n=t(379),r=t(209),o=t(15),s=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="BBoxTileSource",this.define({use_latlon:[o.Bool,!1]})},e.prototype.get_image_url=function(t,e,i){var n,r,o,s,a=this.string_lookup_replace(this.url,this.extra_url_vars);return this.use_latlon?(l=this.get_tile_geographic_bounds(t,e,i),r=l[0],s=l[1],n=l[2],o=l[3]):(h=this.get_tile_meter_bounds(t,e,i),r=h[0],s=h[1],n=h[2],o=h[3]),a.replace("{XMIN}",r.toString()).replace("{YMIN}",s.toString()).replace("{XMAX}",n.toString()).replace("{YMAX}",o.toString());var l,h},e}(r.MercatorTileSource);i.BBoxTileSource=s,s.initClass()},function(t,e,i){var n=t(44),r=function(){function t(){this.images=[]}return t.prototype.pop=function(){var t=this.images.pop();return null!=t?t:new Image},t.prototype.push=function(t){if(!(this.images.length>50)){n.isArray(t)?(e=this.images).push.apply(e,t):this.images.push(t);var e}},t}();i.ImagePool=r},function(t,e,i){var n=t(206);i.BBoxTileSource=n.BBoxTileSource;var r=t(209);i.MercatorTileSource=r.MercatorTileSource;var o=t(210);i.QUADKEYTileSource=o.QUADKEYTileSource;var s=t(211);i.TileRenderer=s.TileRenderer;var a=t(212);i.TileSource=a.TileSource;var l=t(214);i.TMSTileSource=l.TMSTileSource;var h=t(215);i.WMTSTileSource=h.WMTSTileSource},function(t,e,i){var n=t(379),r=t(212),o=t(15),s=t(21),a=t(213),l=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="MercatorTileSource",this.define({snap_to_zoom:[o.Bool,!1],wrap_around:[o.Bool,!0]}),this.override({x_origin_offset:20037508.34,y_origin_offset:20037508.34,initial_resolution:156543.03392804097})},e.prototype.initialize=function(){var e=this;t.prototype.initialize.call(this),this._resolutions=s.range(this.min_zoom,this.max_zoom+1).map(function(t){return e.get_resolution(t)})},e.prototype._computed_initial_resolution=function(){return null!=this.initial_resolution?this.initial_resolution:2*Math.PI*6378137/this.tile_size},e.prototype.is_valid_tile=function(t,e,i){return!(!this.wrap_around&&(t<0||t>=Math.pow(2,i)))&&!(e<0||e>=Math.pow(2,i))},e.prototype.parent_by_tile_xyz=function(t,e,i){var n=this.tile_xyz_to_quadkey(t,e,i),r=n.substring(0,n.length-1);return this.quadkey_to_tile_xyz(r)},e.prototype.get_resolution=function(t){return this._computed_initial_resolution()/Math.pow(2,t)},e.prototype.get_resolution_by_extent=function(t,e,i){var n=(t[2]-t[0])/i,r=(t[3]-t[1])/e;return[n,r]},e.prototype.get_level_by_extent=function(t,e,i){for(var n=(t[2]-t[0])/i,r=(t[3]-t[1])/e,o=Math.max(n,r),s=0,a=0,l=this._resolutions;ah){if(0===s)return 0;if(s>0)return s-1}s+=1}throw new Error("unreachable code")},e.prototype.get_closest_level_by_extent=function(t,e,i){var n=(t[2]-t[0])/i,r=(t[3]-t[1])/e,o=Math.max(n,r),s=this._resolutions.reduce(function(t,e){return Math.abs(e-o)_?(h=s-r,c*=u):(h*=_,c=a-o)}var p=(h-(s-r))/2,d=(c-(a-o))/2;return[r-p,o-d,s+p,a+d]},e.prototype.tms_to_wmts=function(t,e,i){"Note this works both ways";return[t,Math.pow(2,i)-1-e,i]},e.prototype.wmts_to_tms=function(t,e,i){"Note this works both ways";return[t,Math.pow(2,i)-1-e,i]},e.prototype.pixels_to_meters=function(t,e,i){var n=this.get_resolution(i),r=t*n-this.x_origin_offset,o=e*n-this.y_origin_offset;return[r,o]},e.prototype.meters_to_pixels=function(t,e,i){var n=this.get_resolution(i),r=(t+this.x_origin_offset)/n,o=(e+this.y_origin_offset)/n;return[r,o]},e.prototype.pixels_to_tile=function(t,e){var i=Math.ceil(t/this.tile_size);i=0===i?i:i-1;var n=Math.max(Math.ceil(e/this.tile_size)-1,0);return[i,n]},e.prototype.pixels_to_raster=function(t,e,i){var n=this.tile_size<=h;d--)for(var f=l;f<=u;f++)this.is_valid_tile(f,d,e)&&p.push([f,d,e,this.get_tile_meter_bounds(f,d,e)]);return this.sort_tiles_from_center(p,[l,h,u,_]),p},e.prototype.quadkey_to_tile_xyz=function(t){for(var e=0,i=0,n=t.length,r=n;r>0;r--){var o=t.charAt(n-r),s=1<0;r--){var o=1<0;)if(r=r.substring(0,r.length-1),s=this.quadkey_to_tile_xyz(r),t=s[0],e=s[1],i=s[2],a=this.denormalize_xyz(t,e,i,n),t=a[0],e=a[1],i=a[2],this.tile_xyz_to_key(t,e,i)in this.tiles)return[t,e,i];return[0,0,0];var o,s,a},e.prototype.normalize_xyz=function(t,e,i){if(this.wrap_around){var n=Math.pow(2,i);return[(t%n+n)%n,e,i]}return[t,e,i]},e.prototype.denormalize_xyz=function(t,e,i,n){return[t+n*Math.pow(2,i),e,i]},e.prototype.denormalize_meters=function(t,e,i,n){return[t+2*n*Math.PI*6378137,e]},e.prototype.calculate_world_x_by_tile_xyz=function(t,e,i){return Math.floor(t/Math.pow(2,i))},e}(r.TileSource);i.MercatorTileSource=l,l.initClass()},function(t,e,i){var n=t(379),r=t(209),o=function(t){function e(e){return t.call(this,e)||this}return n.__extends(e,t),e.initClass=function(){this.prototype.type="QUADKEYTileSource"},e.prototype.get_image_url=function(t,e,i){var n=this.string_lookup_replace(this.url,this.extra_url_vars),r=this.tms_to_wmts(t,e,i),o=r[0],s=r[1],a=r[2],l=this.tile_xyz_to_quadkey(o,s,a);return n.replace("{Q}",l)},e}(r.MercatorTileSource);i.QUADKEYTileSource=o,o.initClass()},function(t,e,i){var n=t(379),r=t(207),o=t(215),s=t(173),a=t(5),l=t(15),h=t(21),c=t(44),u=function(t){function e(){return null!==t&&t.apply(this,arguments)||this}return n.__extends(e,t),e.prototype.initialize=function(e){this.attributionEl=null,this._tiles=[],t.prototype.initialize.call(this,e)},e.prototype.connect_signals=function(){var e=this;t.prototype.connect_signals.call(this),this.connect(this.model.change,function(){return e.request_render()})},e.prototype.get_extent=function(){return[this.x_range.start,this.y_range.start,this.x_range.end,this.y_range.end]},Object.defineProperty(e.prototype,"map_plot",{get:function(){return this.plot_model.plot},enumerable:!0,configurable:!0}),Object.defineProperty(e.prototype,"map_canvas",{get:function(){return this.plot_view.canvas_view.ctx},enumerable:!0,configurable:!0}),Object.defineProperty(e.prototype,"map_frame",{get:function(){return this.plot_model.frame},enumerable:!0,configurable:!0}),Object.defineProperty(e.prototype,"x_range",{get:function(){return this.map_plot.x_range},enumerable:!0,configurable:!0}),Object.defineProperty(e.prototype,"y_range",{get:function(){return this.map_plot.y_range},enumerable:!0,configurable:!0}),e.prototype._set_data=function(){this.pool=new r.ImagePool,this.extent=this.get_extent(),this._last_height=void 0,this._last_width=void 0},e.prototype._add_attribution=function(){var t=this.model.tile_source.attribution;if(c.isString(t)&&t.length>0){if(null==this.attributionEl){var e=this.plot_model.canvas._right.value-this.plot_model.frame._right.value,i=this.plot_model.canvas._bottom.value-this.plot_model.frame._bottom.value,n=this.map_frame._width.value;this.attributionEl=a.div({class:"bk-tile-attribution",style:{position:"absolute",bottom:i+"px",right:e+"px","max-width":n+"px",padding:"2px","background-color":"rgba(255,255,255,0.8)","font-size":"9pt","font-family":"sans-serif"}});var r=this.plot_view.canvas_view.events_el;r.appendChild(this.attributionEl)}this.attributionEl.innerHTML=t}},e.prototype._map_data=function(){this.initial_extent=this.get_extent();var t=this.model.tile_source.get_level_by_extent(this.initial_extent,this.map_frame._height.value,this.map_frame._width.value),e=this.model.tile_source.snap_to_zoom_level(this.initial_extent,this.map_frame._height.value,this.map_frame._width.value,t);this.x_range.start=e[0],this.y_range.start=e[1],this.x_range.end=e[2],this.y_range.end=e[3],this._add_attribution()},e.prototype._on_tile_load=function(t,e){t.img=e.target,t.loaded=!0,this.request_render()},e.prototype._on_tile_cache_load=function(t,e){t.img=e.target,t.loaded=!0,t.finished=!0,this.notify_finished()},e.prototype._on_tile_error=function(t){t.finished=!0},e.prototype._create_tile=function(t,e,i,n,r){void 0===r&&(r=!1);var o=this.model.tile_source.normalize_xyz(t,e,i),s=o[0],a=o[1],l=o[2],h=this.pool.pop(),c={img:h,tile_coords:[t,e,i],normalized_coords:[s,a,l],quadkey:this.model.tile_source.tile_xyz_to_quadkey(t,e,i),cache_key:this.model.tile_source.tile_xyz_to_key(t,e,i),bounds:n,loaded:!1,finished:!1,x_coord:n[0],y_coord:n[3]};h.onload=r?this._on_tile_cache_load.bind(this,c):this._on_tile_load.bind(this,c),h.onerror=this._on_tile_error.bind(this,c),h.alt="",h.src=this.model.tile_source.get_image_url(s,a,l),this.model.tile_source.tiles[c.cache_key]=c,this._tiles.push(c)},e.prototype._enforce_aspect_ratio=function(){if(this._last_height!==this.map_frame._height.value||this._last_width!==this.map_frame._width.value){var t=this.get_extent(),e=this.model.tile_source.get_level_by_extent(t,this.map_frame._height.value,this.map_frame._width.value),i=this.model.tile_source.snap_to_zoom_level(t,this.map_frame._height.value,this.map_frame._width.value,e);return this.x_range.setv({start:i[0],end:i[2]}),this.y_range.setv({start:i[1],end:i[3]}),this.extent=i,this._last_height=this.map_frame._height.value,this._last_width=this.map_frame._width.value,!0}return!1},e.prototype.has_finished=function(){if(!t.prototype.has_finished.call(this))return!1;if(0===this._tiles.length)return!1;for(var e=0,i=this._tiles;en&&(r=this.extent,l=n,c=!0),c&&(this.x_range.setv({x_range:{start:r[0],end:r[2]}}),this.y_range.setv({start:r[1],end:r[3]}),this.extent=r),this.extent=r;for(var u=e.get_tiles_by_extent(r,l),_=[],p=[],d=[],f=[],v=0,m=u;v=o?[1,_/o]:[o/_,1])[0];t[0]<=e[0]?(n=t[0],(r=t[0]+c*p)>s&&(r=s)):(r=t[0],(n=t[0]-c*p)l&&(d=l)):(d=t[1],(f=t[1]-c/o)r.end)&&(this.v_axis_only=!0),(io.end)&&(this.h_axis_only=!0)}null!=this.model.document&&this.model.document.interactive_start(this.plot_model.plot)},e.prototype._pan=function(t){this._update(t.deltaX,t.deltaY),null!=this.model.document&&this.model.document.interactive_start(this.plot_model.plot)},e.prototype._pan_end=function(t){this.h_axis_only=!1,this.v_axis_only=!1,null!=this.pan_info&&this.plot_view.push_state("pan",{range:this.pan_info})},e.prototype._update=function(t,e){var i,n,r,o=this.plot_model.frame,s=t-this.last_dx,a=e-this.last_dy,l=o.bbox.h_range,h=l.start-s,c=l.end-s,u=o.bbox.v_range,_=u.start-a,p=u.end-a,d=this.model.dimensions;"width"!=d&&"both"!=d||this.v_axis_only?(i=l.start,n=l.end,r=0):(i=h,n=c,r=-s);var f,v,m;"height"!=d&&"both"!=d||this.h_axis_only?(f=u.start,v=u.end,m=0):(f=_,v=p,m=-a),this.last_dx=t,this.last_dy=e;var g=o.xscales,y=o.yscales,b={};for(var x in g){var w=g[x],k=w.r_invert(i,n),S=k[0],C=k[1];b[x]={start:S,end:C}}var T={};for(var A in y){var w=y[A],E=w.r_invert(f,v),S=E[0],C=E[1];T[A]={start:S,end:C}}this.pan_info={xrs:b,yrs:T,sdx:r,sdy:m},this.plot_view.update_range(this.pan_info,!0)},e}(r.GestureToolView);i.PanToolView=s;var a=function(t){function e(e){var i=t.call(this,e)||this;return i.tool_name="Pan",i.event_type="pan",i.default_order=10,i}return n.__extends(e,t),e.initClass=function(){this.prototype.type="PanTool",this.prototype.default_view=s,this.define({dimensions:[o.Dimensions,"both"]})},Object.defineProperty(e.prototype,"tooltip",{get:function(){return 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+Copyright (c) 2012, Anaconda, Inc. +All rights reserved. + +Redistribution and use in source and binary forms, with or without modification, +are permitted provided that the following conditions are met: + +Redistributions of source code must retain the above copyright notice, +this list of conditions and the following disclaimer. + +Redistributions in binary form must reproduce the above copyright notice, +this list of conditions and the following disclaimer in the documentation +and/or other materials provided with the distribution. + +Neither the name of Anaconda nor the names of any contributors +may be used to endorse or promote products derived from this software +without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE +ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE +LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR +CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF +SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS +INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN +CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) +ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF +THE POSSIBILITY OF SUCH DAMAGE. +*/ + +//# sourceMappingURL=bokeh.min.js.map diff --git a/gelweb/gel2mdt/templates/gel2mdt/audit.html b/gelweb/gel2mdt/templates/gel2mdt/audit.html index 24783c85..39e4f73c 100755 --- a/gelweb/gel2mdt/templates/gel2mdt/audit.html +++ b/gelweb/gel2mdt/templates/gel2mdt/audit.html @@ -1,8 +1,9 @@ {% extends 'gel2mdt/base.html' %} +{% load static %} {% block bokeh_head %} - - + + {% if script %} {{script|safe}} {% endif %} From c3a77ec3b11a6bca2caa875caf95950630800e41 Mon Sep 17 00:00:00 2001 From: Theo Cole Date: Thu, 13 Sep 2018 15:58:28 +0100 Subject: [PATCH 10/10] removal of value display --- gelweb/gel2mdt/database_utils/multiple_case_adder.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gelweb/gel2mdt/database_utils/multiple_case_adder.py b/gelweb/gel2mdt/database_utils/multiple_case_adder.py index 12304a0e..ee75d7f4 100755 --- a/gelweb/gel2mdt/database_utils/multiple_case_adder.py +++ b/gelweb/gel2mdt/database_utils/multiple_case_adder.py @@ -413,11 +413,11 @@ def add_cases(self, update=False): elif many: model_list = [] for case in tqdm(cases, desc="Parsing {model_type} into DB".format(model_type=model_type.__name__)): + tqdm.write(case.request_id) attribute_manager = case.attribute_managers[model_type] many_case_model = attribute_manager.case_model for case_model in tqdm(many_case_model.case_models, desc=case.request_id): model_list.append(case_model) - tqdm.write(str(case_model.entry)) # now create the required new Model instances from CaseModel lists if model_type == GELInterpretationReport: