v0.3.36 - bug fixes

What's Changed

• Fix annotation order of WsiAnnotations when sorting is None by @BPdeRooij in #215

New Contributors

• @BPdeRooij made their first contribution in #215

Full Changelog: v0.3.35...v0.3.36

v0.3.35 - Removing untested functionality. Extend behavior of TiffWriter

A few small breaking changes and an update

Breaking changes

Removed utilities to move towards version 1.0, which should have only tested functionality. The masking utility will be replaced by ahcore as the FESI methods are, in general, not very good.

• Remove mask utility by @jonasteuwen in #209
• Remove multiscale dataset by @jonasteuwen in #211

What's New

• Add an optional colormap parameter while writing tiff files. by @AjeyPaiK in #213

Full Changelog: v0.3.34...v0.3.35

v0.3.34 - ICC profiles, code streamlined, improved HaloXML parsing

What's Changed

• Improve logic of limit_bounds together with rois by @jonasteuwen in #201
• Added complete tests for convert_annotations by @jonasteuwen in #199
• Bug/fix annotation sorting by @jonasteuwen in #203
• Implement offset for HaloXML by @jonasteuwen in #204
• Implement ICC profile in the pyvips backend by @jonasteuwen in #206

New Contributors

• @moerlemans made their first contribution in #198

Full Changelog: v0.3.32...v0.3.34

v0.3.33 - bug fixes, minor enhancements

What's Changed

• Improve logic of limit_bounds together with rois by @jonasteuwen in #201
• Added complete tests for convert_annotations by @jonasteuwen in #199
• The behavior of annotations has changed. An empty annotation list from a TiledWsiDataset with an annotation based WsiAnnotations.read_region() means that the are no annotations for this tile, while None means no annotations are given. This is also encapsulated in the exceptions raised.

New Contributors

• @moerlemans made their first contribution in #198

Full Changelog: v0.3.32...v0.3.33

v0.3.32 - bug fixes and improve tests

This release is a bug fix release. Tests to catch those bugs have also been added.

What's Changed

• Initial work to support OpenSlide 4.0.0, implement ICC profiles in OpenSlide Backend #185
• Fix the output_tile_size which was accidentally removed (#191, #193) by @AjeyPaiK in #192
• GeoJSON annotations were not properly sorted by @jonasteuwen in #194
• Bug/fix slide bounds in TiffFile by @jonasteuwen in #196

Full Changelog: v0.3.31...v0.3.32

v0.3.31 - improve exceptions

What's Changed

• Improve exceptions by @jonasteuwen in #181
• Fix README.md update script @jonasteuwen in #181

Full Changelog: v0.3.30...v0.3.31

v0.3.30 - minor bug fixes, small enhancements

What's Changed

• Add __iter__ to dlup.data.dataset.TiledWsiDataset and added .pre-commit-config.yaml by @jonasteuwen in #173
• add CITATION.cff file with main contributors by @YoniSchirris in #159
• Fix bug in pyvips_backend.py by @jonasteuwen in #178
• Implement functional interface for RenameLabels by @jonasteuwen in #176

Full Changelog: v0.3.29...v0.3.30

v0.3.29 - dlup is now strongly typed

dlup now passed mypy --strict

v0.3.28 - minor bugfixes, update mypy parsing

What's Changed

• Minor bug fixes
• Increase test coverage by @jonasteuwen in #165
• Improve mypy by @jonasteuwen in #166

Full Changelog: v0.3.27...v0.3.28

v0.3.27

What's Changed

• Fix rename labels by @jonasteuwen in #164
• Small bug fixes

Full Changelog: v0.3.26...v0.3.27