From cc40f7b16fd48ade94ca82ea51902f9d5b6c381a Mon Sep 17 00:00:00 2001
From: AndrewEichmann-NOAA <Andrew.Eichmann@noaa.gov>
Date: Wed, 8 May 2024 17:02:23 -0500
Subject: [PATCH] removed letkf task from gdasapp

---
 .../exgdas_global_marine_analysis_letkf.py    | 25 ------
 test/soca/gw/CMakeLists.txt                   |  2 +-
 ush/soca/marine_letkf.py                      | 90 -------------------
 3 files changed, 1 insertion(+), 116 deletions(-)
 delete mode 100755 scripts/exgdas_global_marine_analysis_letkf.py
 delete mode 100644 ush/soca/marine_letkf.py

diff --git a/scripts/exgdas_global_marine_analysis_letkf.py b/scripts/exgdas_global_marine_analysis_letkf.py
deleted file mode 100755
index 97e6b1279..000000000
--- a/scripts/exgdas_global_marine_analysis_letkf.py
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/usr/bin/env python3
-# exgdas_global_marine_analysis_ecen.py
-# This script creates an MarineLETKF class
-# and runs the initialize, run, and finalize  methods
-# which currently are stubs
-import os
-
-from wxflow import Logger, cast_strdict_as_dtypedict
-# TODO (AFE): change to from pygfs.task.marine_recenter import MarineLETKF
-from soca.marine_recenter import MarineLETKF
-
-# Initialize root logger
-logger = Logger(level='DEBUG', colored_log=True)
-
-
-if __name__ == '__main__':
-
-    # Take configuration from environment and cast it as python dictionary
-    config = cast_strdict_as_dtypedict(os.environ)
-
-    # Instantiate the aerosol analysis task
-    MarineLetkf = MarineLETKF(config)
-    MarineLetkf.initialize()
-    MarineLetkf.run()
-    MarineLetkf.finalize()
diff --git a/test/soca/gw/CMakeLists.txt b/test/soca/gw/CMakeLists.txt
index 524428de0..38cea0d23 100644
--- a/test/soca/gw/CMakeLists.txt
+++ b/test/soca/gw/CMakeLists.txt
@@ -77,7 +77,7 @@ foreach(jjob ${jjob_list})
     WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/soca/gw/testrun)
   set_tests_properties(${test_name}
     PROPERTIES
-    ENVIRONMENT "PYTHONPATH=${PROJECT_SOURCE_DIR}/ush/ioda/bufr2ioda::${PROJECT_SOURCE_DIR}/ush:${PROJECT_BINARY_DIR}/../lib/python${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}:$ENV{PYTHONPATH}")
+    ENVIRONMENT "PYTHONPATH=${PROJECT_SOURCE_DIR}/ush/ioda/bufr2ioda::${PROJECT_SOURCE_DIR}/ush:${PROJECT_BINARY_DIR}/../lib/python${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}:$ENV{PYTHONPATH}:${PROJECT_SOURCE_DIR}/../../../../ush/python")
 
 
   set(setup "--skip") # Only run the setup of the first test, if not, it will hang
diff --git a/ush/soca/marine_letkf.py b/ush/soca/marine_letkf.py
deleted file mode 100644
index 20ef0c0b6..000000000
--- a/ush/soca/marine_letkf.py
+++ /dev/null
@@ -1,90 +0,0 @@
-#!/usr/bin/env python3
-
-from datetime import datetime, timedelta
-import f90nml
-from logging import getLogger
-import os
-from soca import bkg_utils
-from typing import Dict
-import ufsda
-from ufsda.stage import soca_fix
-from wxflow import (AttrDict,
-                    chdir,
-                    Executable,
-                    FileHandler,
-                    logit,
-                    parse_j2yaml,
-                    Task,
-                    Template,
-                    TemplateConstants,
-                    WorkflowException,
-                    YAMLFile)
-
-logger = getLogger(__name__.split('.')[-1])
-
-
-class MarineLETKF(Task):
-    """
-    Class for global ocean analysis recentering task
-    """
-
-    @logit(logger, name="MarineLETKF")
-    def __init__(self, config: Dict) -> None:
-        """Constructor for ocean recentering task
-        Parameters:
-        ------------
-        config: Dict
-            configuration, namely evironment variables
-        Returns:
-        --------
-        None
-        """
-
-        logger.info("init")
-        super().__init__(config)
-
-    @logit(logger)
-    def initialize(self):
-        """Method initialize for ocean recentering task
-        Parameters:
-        ------------
-        None
-        Returns:
-        --------
-        None
-        """
-
-        logger.info("initialize")
-        RUN = self.runtime_config.RUN
-        gcyc = self.runtime_config.gcyc
-
-    @logit(logger)
-    def run(self):
-        """Method run for ocean recentering task
-        Parameters:
-        ------------
-        None
-        Returns:
-        --------
-        None
-        """
-
-        logger.info("run")
-
-        chdir(self.runtime_config.DATA)
-
-    @logit(logger)
-    def finalize(self):
-        """Method finalize for ocean recentering task
-        Parameters:
-        ------------
-        None
-        Returns:
-        --------
-        None
-        """
-
-        logger.info("finalize")
-
-        RUN = self.runtime_config.RUN
-        cyc = self.runtime_config.cyc