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Bootstrap fails on FreeBSD #148

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yonas opened this issue Sep 5, 2024 · 4 comments
Open

Bootstrap fails on FreeBSD #148

yonas opened this issue Sep 5, 2024 · 4 comments

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@yonas
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yonas commented Sep 5, 2024

$ ./bootstrap --unprivileged
...
===> Installing dependencies for cwrappers-20220403
===> Overriding tools for cwrappers-20220403
===> Extracting for cwrappers-20220403
/bin/cp -R /home/yonas/git/pkgsrc/pkgtools/cwrappers/files/bin /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/cwrappers-20220403
/usr/bin/touch /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/cwrappers-20220403/transform-gcc.c
/bin/rm -f /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/libnbcompat/config.guess /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/libnbcompat/config.sub
/bin/ln -fs /home/yonas/git/pkgsrc/mk/gnu-config/config.guess /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/libnbcompat/config.guess
/bin/ln -fs /home/yonas/git/pkgsrc/mk/gnu-config/config.sub /home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/libnbcompat/config.sub
===> Patching for cwrappers-20220403
===> Creating toolchain wrappers for cwrappers-20220403
===> Configuring for cwrappers-20220403
=> Configuring and building libnbcompat
checking build system type... x86_64-unknown-freebsd14.1
checking host system type... x86_64-unknown-freebsd14
checking for x86_64-unknown-freebsd14-gcc... clang
checking whether the C compiler works... no
configure: error: in `/home/yonas/git/pkgsrc/bootstrap/work/wrk/pkgtools/cwrappers/work/libnbcompat':
configure: error: C compiler cannot create executables
See `config.log' for more details
*** Error code 77

Stop.
bmake[1]: stopped making "install" in /home/yonas/git/pkgsrc/pkgtools/cwrappers
*** Error code 1

Stop.
bmake: stopped making "install" in /home/yonas/git/pkgsrc/pkgtools/cwrappers
===> exited with status 1
aborted.

The log for libnbcompat: https://pastebin.mozilla.org/TAAfh5rZ

@bsiegert
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bsiegert commented Sep 5, 2024

Unfortunately, the log in the pastebin is for a different invocation. You need to look for config.log in /home/yonas/git/pkgsrc/pkgtools/cwrappers/work/libnbcompat. Could you post that one please?

It might be due to a newer compiler that doesn't allow implicit function declarations. Try adding -Wno-implicit-function-declarations to your CFLAGS.

@yonas
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yonas commented Sep 5, 2024

@bsiegert Here's the log with -Wno-implicit-function-declarations: https://paste.mozilla.org/xVmiBSSg

@yonas
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yonas commented Sep 5, 2024

eval: clang: not found. I'll make a sym link and re-run.

@yonas
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yonas commented Sep 5, 2024

Got further by installing gcc. Ran into this error:

===> running: /bin/sh /home/yonas/git/pkgsrc/bootstrap/work/bin/install-sh -c -o yonas -g yonas -m 755 /home/yonas/git/pkgsrc/bootstrap/work/pkg_install/add/pkg_add /home/yonas/git/pkgsrc/bootstrap/work/sbin/pkg_add
===> running: /bin/sh /home/yonas/git/pkgsrc/bootstrap/work/bin/install-sh -c -o yonas -g yonas -m 755 /home/yonas/git/pkgsrc/bootstrap/work/pkg_install/admin/pkg_admin /home/yonas/git/pkgsrc/bootstrap/work/sbin/pkg_admin
===> running: /bin/sh /home/yonas/git/pkgsrc/bootstrap/work/bin/install-sh -c -o yonas -g yonas -m 755 /home/yonas/git/pkgsrc/bootstrap/work/pkg_install/create/pkg_create /home/yonas/git/pkgsrc/bootstrap/work/sbin/pkg_create
===> running: /bin/sh /home/yonas/git/pkgsrc/bootstrap/work/bin/install-sh -c -o yonas -g yonas -m 755 /home/yonas/git/pkgsrc/bootstrap/work/pkg_install/info/pkg_info /home/yonas/git/pkgsrc/bootstrap/work/sbin/pkg_info
===> running: (cd /home/yonas/git/pkgsrc/pkgtools/cwrappers && /home/yonas/git/pkgsrc/bootstrap/work/bin/bmake  MAKE_JOBS=1 PKG_COMPRESSION=none PKGSRC_KEEP_BIN_PKGS=no MAKECONF=/home/yonas/git/pkgsrc/bootstrap/work/mk.conf install)
===> Installing dependencies for cwrappers-20220403
=> Build dependency gcc6>=6.5.0nb9: NOT found
=> Verifying reinstall for ../../lang/gcc6
=> Bootstrap dependency digest>=20211023: NOT found
=> Verifying reinstall for ../../pkgtools/digest
===> Installing dependencies for digest-20220214
=> Tool dependency cwrappers>=20150314: NOT found
=> Verifying reinstall for ../../pkgtools/cwrappers
ERROR: This package has set PKG_FAIL_REASON:
ERROR: Circular dependency detected
*** Error code 1

Stop.
bmake[3]: stopped making "reinstall" in /home/yonas/git/pkgsrc/pkgtools/cwrappers
*** Error code 1

Stop.
bmake[2]: stopped making "reinstall" in /home/yonas/git/pkgsrc/pkgtools/digest
*** Error code 1

Stop.
bmake[1]: stopped making "reinstall" in /home/yonas/git/pkgsrc/lang/gcc6
*** Error code 1

Stop.
bmake: stopped making "install" in /home/yonas/git/pkgsrc/pkgtools/cwrappers
===> exited with status 1
aborted.

netbsd-srcmastr pushed a commit that referenced this issue Sep 19, 2024
This is a point release intended to clear up a couple of CVEs and
apply point fixes that have been accumulating since 5.2.1

There are a few unresolved (but minor) memory leaks related to design
issues in the API that still need to be resolved. Expect those fixes
in the next release.

Code Fixes
----------

* Fixes for CVE-2023-48161, CVE-2022-28506,

* Address SF issue #138 Documentation for obsolete utilities still installed

* Address SF issue #139: Typo in "LZW image data" page ("110_2 = 4_10")

* Address SF issue #140: Typo in "LZW image data" page ("LWZ")

* Address SF issue #141: Typo in "Bits and bytes" page ("filed")

* Note as already fixed SF issue #143: cannot compile under mingw

* Address SF issue #144: giflib-5.2.1 cannot be build on windows and other platforms using c89

* Address SF issue #145: Remove manual pages installation for binaries that are not installed too

* Address SF issue #146: [PATCH] Limit installed man pages to binaries, move giflib to section 7

* Address SF issue #147 [PATCH] Fixes to doc/whatsinagif/ content

* Address SF issue #148: heap Out of Bound Read in gif2rgb.c:298 DumpScreen2RGB

* Declared no-info on SF issue #150: There is a denial of service vulnerability in GIFLIB 5.2.1

* Declared Won't-fix on SF issue 149: Out of source builds no longer possible

* Address SF issue #151: A heap-buffer-overflow in gif2rgb.c:294:45

* Address SF issue #152: Fix some typos on the html documentation and man pages

* Address SF issue #153: Fix segmentation faults due to non correct checking for args

* Address SF issue #154: Recover the giffilter manual page

* Address SF issue #155: Add gifsponge docs

* Address SF issue #157: An OutofMemory-Exception or Memory Leak in gif2rgb

* Address SF issue #158: There is a null pointer problem in gif2rgb

* Address SF issue #159 A heap-buffer-overflow in GIFLIB5.2.1 DumpScreen2RGB() in gif2rgb.c:298:45

* Address SF issue #163: detected memory leaks in openbsd_reallocarray giflib/openbsd-reallocarray.c

* Address SF issue #164: detected memory leaks in GifMakeMapObject giflib/gifalloc.c

* Address SF issue #166: a read zero page leads segment fault in getarg.c and memory leaks in gif2rgb.c and gifmalloc.c

* Address SF issue #167: Heap-Buffer Overflow during Image Saving in DumpScreen2RGB Function at Line 321 of gif2rgb.c
netbsd-srcmastr pushed a commit that referenced this issue Nov 6, 2024
# nloptr 2.1.1

This is a patch release to work around a bug in the CRAN checks. Specifically,
one of the unit tests for the `isres()` algorithm was failing on some CRAN
builds because convergence is stochastic with slightly different results even
with the same fixed seed prior to calling the function.

# nloptr 2.1.0
This release deprecates the default behavior of the inequality equations in any
wrapper function which uses them. Currently, they are calibrated to be >= 0.
This version allows for the equations to be consistent with the main `nloptr`
function, which requires <= 0. In a future release, the default behavior will
switch to assuming the calibration is <= 0, and eventually, the >= 0 behavior
will be removed. It also includes a large number of safety and efficiency
changes, and an expansion of the unit tests to 100% coverage for all files but
one. The major changes include:

* Reversed the direction of the inequality equations `hin` and `hinjac` in the
wrapper functions which use them, bringing them into compliance with the main
`nloptr` call. This addresses
[Issue #148](astamm/nloptr#148);
* Cleaned the Hock-Schittkowski problem no. 100, Hartmann 6-dimensional, and
Powell exponential examples. This addresses
[Issue #152](astamm/nloptr#152) and
[Issue #156](astamm/nloptr#156);
* Updated roxygen version;
* Updated maintainer email;
* Deal with NA returns from `parallel::detectCores()` (contributed by @jeroen in
PR #150);
* Setup rhub v2 checks;
* Update cmake installation instructions on Mac with brew (#146);
* Allow use of equality constraints with COBYLA (#135);
* Replaced the unit testing framework of `testthat` with `tinytest` (See
[Issue #136](astamm/nloptr#136));
* Brought coverage of `is.nloptr` to 100%. The only file not completely covered
by unit tests is `nloptr.c`. The uncovered calls are error messages which get
trapped by tests in R before the call gets to C;
* Linted package for code correctness and consistency;
* Updated vignette, DESCRIPTION, and NEWS;
* Updated package website to use bootstrap 5;
* Expanded unit tests: coverage now over 97% with no file below 90%;
* Removed forcing `C++11`;
* Added safety checks to C code;
* Added many safety and efficiency enhancements to R code;
* Most R code style made self-consistent;
* Updated documentation and messages for accuracy and mathematical formatting
* Updated Github actions;
* Some bugfixes (e.g. in `isres` or the warning in `nl.grad`).
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